prot_C-tenellus_contig8309.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8309.1.1
Unique Nameprot_C-tenellus_contig8309.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length187
Homology
[Close]
BLAST of mRNA_C-tenellus_contig8309.1.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.560e-42
Identity = 93/192 (48.44%), Postives = 114/192 (59.38%), Query Frame = 0 
Query:    1 MSSDVGVDVDVLLQDLRRAEEQHPQSVCSSLGDPLPFRIVSSGVLGDSVLVPRE------RGADAEDKKLGNL---KGEALHDAIVTSTLPFGTDSLLKLAPSCREELKNRYLNIERHIVADREEKTAQCWFRDTTWQRGLGSSLLTVSMSGARHTMAVKPVNDFSAFVLPTLGLEGPFPNARVKHGSGWEV 183
            M+ D  +D+D LL +L  AE +  QS        LPFRIVS G+ G+SVLVP        +G D +    G     +GE   D + TSTLPFG  SL  LAP CR+EL++RYLN+  HI A+  E+    WF  TTW R +GSSLLTV+MS AR TMAVKP  D   F+  +LG  GPFP AR    SGWEV
Sbjct:    7 MAGDGDLDIDSLLLELEDAEAKDAQSPKVPQLAGLPFRIVSVGLEGESVLVPTTAVDAPCQGNDDDASSQGGSSSGRGERWRDMMSTSTLPFGASSLPTLAPPCRQELQDRYLNVSAHIAAETREEGVDKWFDKTTWSRSIGSSLLTVAMSQARSTMAVKPAKDLKTFLGSSLGHHGPFPPARRDLDSGWEV 198
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8309.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJL2_ECTSI1.560e-4248.44DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 96..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8309contigC-tenellus_contig8309:371..2226 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8309.1.1mRNA_C-tenellus_contig8309.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8309 130..3512 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8309.1.1 ID=prot_C-tenellus_contig8309.1.1|Name=mRNA_C-tenellus_contig8309.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=187bp
MSSDVGVDVDVLLQDLRRAEEQHPQSVCSSLGDPLPFRIVSSGVLGDSVL
VPRERGADAEDKKLGNLKGEALHDAIVTSTLPFGTDSLLKLAPSCREELK
NRYLNIERHIVADREEKTAQCWFRDTTWQRGLGSSLLTVSMSGARHTMAV
KPVNDFSAFVLPTLGLEGPFPNARVKHGSGWEVTLD*
back to top