mRNA_C-tenellus_contig8046.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8046.2.1
Unique NamemRNA_C-tenellus_contig8046.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8046.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8046contigC-tenellus_contig8046:3571..6443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1381
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_002300.2
Cds size1110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8046.2.1prot_C-tenellus_contig8046.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8046 3651..6252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790077.176511-UTR-C-tenellus_contig8046:3570..36501680790077.176511-UTR-C-tenellus_contig8046:3570..3650Choristocarpus tenellus KU2346UTRC-tenellus_contig8046 3571..3650 +
1680790077.235734-UTR-C-tenellus_contig8046:6252..64431680790077.235734-UTR-C-tenellus_contig8046:6252..6443Choristocarpus tenellus KU2346UTRC-tenellus_contig8046 6253..6443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790077.1886384-CDS-C-tenellus_contig8046:3650..37751680790077.1886384-CDS-C-tenellus_contig8046:3650..3775Choristocarpus tenellus KU2346CDSC-tenellus_contig8046 3651..3775 +
1680790077.2015116-CDS-C-tenellus_contig8046:4270..48021680790077.2015116-CDS-C-tenellus_contig8046:4270..4802Choristocarpus tenellus KU2346CDSC-tenellus_contig8046 4271..4802 +
1680790077.2159061-CDS-C-tenellus_contig8046:5055..51791680790077.2159061-CDS-C-tenellus_contig8046:5055..5179Choristocarpus tenellus KU2346CDSC-tenellus_contig8046 5056..5179 +
1680790077.2256112-CDS-C-tenellus_contig8046:5923..62521680790077.2256112-CDS-C-tenellus_contig8046:5923..6252Choristocarpus tenellus KU2346CDSC-tenellus_contig8046 5924..6252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8046.2.1

>prot_C-tenellus_contig8046.2.1 ID=prot_C-tenellus_contig8046.2.1|Name=mRNA_C-tenellus_contig8046.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=370bp
MEGGSGGNIGGDGRPEQHTHTIINSIASEGPLRSISSPPFGGPVDFRNTG
PLAHTNAAHHAPTGHPTHSSGMSAPQTTLNQSMVHSVTPVATNSPTTGRQ
ACPLPISPPHQPQPSDAHAPASIAPPAVEPAFSQPAVYAQPSPEKGPFAG
NQPPPTELLAPRMTTTDPLGLGSNSHVVQNAPPWSSAASVGAGVEVSSAL
NGPSASMPRSGVSLGGGVESSMPSMMVRPPPPPIPVAPPVTQEPQQLPMP
ALPPPPPGASPPFPVAALIPEPVTKDILTPKRDTLDDLVDDFLAPSTAIP
PGPLELKVELGLLGAGGGWVEDLRRLAKLRAWDVFVSTTEGIMEAYAQGR
AGEMSPSQVRKADAVKIKE*
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mRNA from alignment at C-tenellus_contig8046:3571..6443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8046.2.1 ID=mRNA_C-tenellus_contig8046.2.1|Name=mRNA_C-tenellus_contig8046.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2873bp|location=Sequence derived from alignment at C-tenellus_contig8046:3571..6443+ (Choristocarpus tenellus KU2346)
TGTATCGTAGGTTCCTGAGAGGGGTGTGTGTTGTGGATGAAATAAGTAGA
ACGGATTGGGAAAGGCAACGATTTGGAGCCATGGAGGGAGGAAGCGGGGG
AAACATTGGAGGTGATGGAAGGCCGGAGCAGCACACTCATACTATCATCA
ACAGCATCGCTTCTGAAGGCCCTCTCCGTAGTATTTCCAGCCCACCCTTT
GGAGGGTGAGTTTTTGTACTCAAGTAGTAGCACCTGTTCAGATTGAATGC
TCCAAGTCAATACTTCCACAATGATGGATGAGACGACCTTCTGCAATCAA
ATTATAATTTCGATCGCCGACCTGGATGATGGCCTCTAAGTCCCCTCCTG
ATAATGACGAAGAAAACTGGCACAACTTCCTCTCTGCACTACATCCTGTT
GCCCTAGATGTGTGATGGAGTCATCATTCGAAGAGAAAAAAGGATGTAGA
GTATCTTCCGTCAGTTTTCGTATTAGAAGTACGGCGGGTGTTGGTGACAG
TGACACTTTGCACATTGTTCTCTTAGGTGGATTGTTGAAGAACGATTTTG
CACACAGAACAACGATGCAGACTCCTGCTTTTCGTTATCGTCATCTGCAT
GGTGAATGTATGCAATCGCATTTGGGAACAGTCAATGGAAATTTCGCCCC
CCACCCTGTTGCCTTCACACCATTGTGCCATTGAACACGTTCCCACACAG
GCCTGTAGACTTCAGGAACACTGGCCCCCTCGCCCATACCAATGCGGCAC
ATCACGCTCCAACAGGTCATCCTACGCATTCCTCCGGCATGAGCGCCCCC
CAGACCACATTGAATCAATCAATGGTGCATTCCGTGACCCCGGTCGCCAC
CAACTCACCCACCACTGGAAGGCAGGCTTGCCCACTACCGATTAGCCCAC
CTCACCAGCCACAACCGTCAGATGCACACGCCCCTGCCTCAATTGCGCCC
CCTGCTGTAGAACCTGCCTTCTCCCAGCCAGCAGTGTATGCGCAACCCTC
TCCCGAGAAGGGGCCTTTCGCCGGCAATCAACCGCCTCCAACAGAACTGT
TGGCACCAAGAATGACCACTACAGACCCCCTAGGTTTGGGTTCGAATTCT
CACGTGGTGCAAAATGCTCCACCATGGAGCAGTGCTGCTTCAGTTGGGGC
GGGAGTGGAGGTATCTAGCGCGCTTAATGGGCCTAGTGCATCAATGCCCA
GATCCGGGGTGTCACTGGGAGGTGGGGTGGAGGTGAGCACACTTGTAAAC
AAATAGCTCCGAACGAAAAAAGGCGGCTCAGATAGCCCTGACATTATTGG
TATTTCGTGTTCAGGTCACAAGGCCTCTGTGGTGTTAGGGAATACCTTCC
AGCAGCATCATAGAGCCTTCCTTGGTATCTGGATATAACCCTTAATGAGA
ATGTGAAGTAGTGAGTACAAGAGTATCATTGATGCACAATATACTTCAGT
TCTCCTGACGAAACACTCCTTCCCAACTGCCACAGAGCTCAATGCCCTCG
ATGATGGTCCGGCCACCGCCGCCCCCTATACCAGTAGCTCCACCTGTGAC
CCAAGAACCACAGCAGTTGCCAATGCCAGCACTCCCACCCCCACCTCCTG
GAGCATCACGTGAGGATGGAAGGATTGCAATGTTGATGTTGGTACTCTTT
CCCTGTTTTGGTAGCCTTCCGCCTTTGAAGGTGTTTGATTTCTGTGGGTA
ACAAGCATGTCTGAGATAGAAGTCTTCAGTAATGTTTTTCTAAGTGCATG
TTCTTTGTCTACGTGCGATTCCTTTCTGTGATGAGGTTTTGTGAGAGTTG
GATAGACTGTTTAGTTGATATCGGAGAACTGGTGTACTGTTCAAAATTTT
CCTCCCAATTGTTGTTTTGATGCTATTGATTTGAGTGGTGATTCTGAAGA
TGGTTGTGCAGTGTCGAGTGCTGTTTTACACTTCACCACTTGCTTCTCGA
CGATTCCATTCAGCATATTGTGATTGTGGTGTATTGTGGGAGTATGGAAG
GTGCCTCTTCCTACAGTATGAATCAGTGAGGGAAGGCAGATTGTTGAACC
ACCGCCTATGTTGGAATACACACAGTGTAGGAATGATAGAGGGTGAACCA
TTACAATTCTTCCGTGTAGTAGTAAAGATCCCAAGTGAAAATTTTACCCC
ATTTTTCTTAACGAGGTGAAAGAGAACCATTATTATTCTTCCCTTGCTGT
CCAAGAACAGTCTTCCACATGCAAACCGAGCACCAAATAAAAACTCACTA
CTCACTCACTACATTTTCCTCCCCTCCAATTCATCCTCTCATTCCCCGCT
CTGTTTCCCTCCCCCCTCTGCATGTATGTTTTGTTGCTATGTTTGAGTAA
CAGCTCCTTTTCCAGTTGCTGCATTGATCCCAGAACCTGTCACAAAGGAT
ATCCTTACCCCAAAGAGAGACACGTTGGATGATCTTGTTGATGACTTCTT
AGCCCCATCCACTGCCATACCTCCTGGCCCCTTGGAGCTGAAAGTGGAAC
TGGGGCTGTTGGGGGCTGGAGGGGGTTGGGTGGAAGACCTTCGGCGACTA
GCTAAACTACGGGCTTGGGATGTGTTTGTTTCAACCACTGAGGGCATCAT
GGAGGCGTATGCACAGGGCAGGGCAGGAGAGATGTCGCCTTCCCAGGTGA
GAAAAGCTGATGCCGTTAAGATTAAGGAATGAGTGTATCAATCAACATAT
TTTAAGGGGGCAGAACCGAGAAGGCGAGCAAAGCAGATTGTGACTAACTA
GGTGCTGTCTTGGGTGCAGGGAAAGAGGGCGGAGAAGTAAGGGTGACGAC
AAGTTAAGCTTGTGTTTGCAGCAAGGCATCCATGAGCGTGAGTGTCCTTC
ACCAGCAAGAGAGTTGTCCTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8046:3571..6443+

>mRNA_C-tenellus_contig8046.2.1 ID=mRNA_C-tenellus_contig8046.2.1|Name=mRNA_C-tenellus_contig8046.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1110bp|location=Sequence derived from alignment at C-tenellus_contig8046:3571..6443+ (Choristocarpus tenellus KU2346)
ATGGAGGGAGGAAGCGGGGGAAACATTGGAGGTGATGGAAGGCCGGAGCA
GCACACTCATACTATCATCAACAGCATCGCTTCTGAAGGCCCTCTCCGTA
GTATTTCCAGCCCACCCTTTGGAGGGCCTGTAGACTTCAGGAACACTGGC
CCCCTCGCCCATACCAATGCGGCACATCACGCTCCAACAGGTCATCCTAC
GCATTCCTCCGGCATGAGCGCCCCCCAGACCACATTGAATCAATCAATGG
TGCATTCCGTGACCCCGGTCGCCACCAACTCACCCACCACTGGAAGGCAG
GCTTGCCCACTACCGATTAGCCCACCTCACCAGCCACAACCGTCAGATGC
ACACGCCCCTGCCTCAATTGCGCCCCCTGCTGTAGAACCTGCCTTCTCCC
AGCCAGCAGTGTATGCGCAACCCTCTCCCGAGAAGGGGCCTTTCGCCGGC
AATCAACCGCCTCCAACAGAACTGTTGGCACCAAGAATGACCACTACAGA
CCCCCTAGGTTTGGGTTCGAATTCTCACGTGGTGCAAAATGCTCCACCAT
GGAGCAGTGCTGCTTCAGTTGGGGCGGGAGTGGAGGTATCTAGCGCGCTT
AATGGGCCTAGTGCATCAATGCCCAGATCCGGGGTGTCACTGGGAGGTGG
GGTGGAGAGCTCAATGCCCTCGATGATGGTCCGGCCACCGCCGCCCCCTA
TACCAGTAGCTCCACCTGTGACCCAAGAACCACAGCAGTTGCCAATGCCA
GCACTCCCACCCCCACCTCCTGGAGCATCACCTCCTTTTCCAGTTGCTGC
ATTGATCCCAGAACCTGTCACAAAGGATATCCTTACCCCAAAGAGAGACA
CGTTGGATGATCTTGTTGATGACTTCTTAGCCCCATCCACTGCCATACCT
CCTGGCCCCTTGGAGCTGAAAGTGGAACTGGGGCTGTTGGGGGCTGGAGG
GGGTTGGGTGGAAGACCTTCGGCGACTAGCTAAACTACGGGCTTGGGATG
TGTTTGTTTCAACCACTGAGGGCATCATGGAGGCGTATGCACAGGGCAGG
GCAGGAGAGATGTCGCCTTCCCAGGTGAGAAAAGCTGATGCCGTTAAGAT
TAAGGAATGA
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