mRNA_C-tenellus_contig8025.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8025.2.1
Unique NamemRNA_C-tenellus_contig8025.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.000e-37
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   22 SLCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            SLCGQHHR+LKLFLQCGKQEV++AIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALG+YSQ     +
Sbjct:  514 SLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAKTAI 589          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.020e-37
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   22 SLCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            SLCGQHHR+LKLFLQCGKQEV++AIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALG+YSQ     +
Sbjct: 1135 SLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAKTAI 1210          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A7S1CDP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDP1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.460e-32
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 1
Query:   22 SLCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQ 231
            ++CGQ+H++LKLFLQCG+ E+D AI VVGKAR+DMLTHTLIDFLMGETDGVPKDPNYI+RLYMALGNY Q
Sbjct: 1076 AICGQYHKALKLFLQCGEAEMDRAIEVVGKARSDMLTHTLIDFLMGETDGVPKDPNYIFRLYMALGNYPQ 1145          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A7S2CHE3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHE3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.850e-32
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1
Query:   13 HQTSLCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            H  SLCGQ+ R+LKLFLQCG++EVD AI VVGKARNDMLTHTLIDFLMGETDGVPK+P +IYRLY+ALGNY+Q     +
Sbjct:  234 HFYSLCGQYARALKLFLQCGEKEVDRAIEVVGKARNDMLTHTLIDFLMGETDGVPKEPFHIYRLYLALGNYAQAAKTAI 312          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A7S2AWF5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWF5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.520e-32
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 1
Query:   13 HQTSLCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            H  +LCGQH ++LKLFLQCG +EV+ AI VVGKARNDMLTHTLIDFLMGETDGVPK+P ++YRLY+ALGNY+Q     L
Sbjct:  155 HFYALCGQHAKALKLFLQCGDKEVERAIEVVGKARNDMLTHTLIDFLMGETDGVPKEPFHVYRLYLALGNYAQAAKTAL 233          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A067CC00_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CC00_SAPPC)

HSP 1 Score: 123 bits (309), Expect = 7.740e-31
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:   25 LCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            +CG +H++L+LFLQCG+ E+ +AI VVGKARNDMLTHTLIDFLMG+TDG+PKDPNYI+RLYMALGNY+Q     +
Sbjct: 1061 VCGNYHKALRLFLQCGESELGNAIDVVGKARNDMLTHTLIDFLMGDTDGIPKDPNYIFRLYMALGNYAQAAKTAI 1135          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A1W0A7H3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7H3_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.060e-30
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   25 LCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            +CG +H++L+LFLQCG+ E+  AI VVGKARNDMLTHTLIDFLMG+TDG+PKDPNYI+RLYMALGNY+Q     +
Sbjct: 1060 VCGNYHKALRLFLQCGESELGKAIDVVGKARNDMLTHTLIDFLMGDTDGIPKDPNYIFRLYMALGNYAQAAKTAI 1134          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A6G0XL25_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XL25_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.660e-30
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   25 LCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            +CG +H++L+LFLQCG+ E+  AI VVGKARNDMLTHTLID+LMG+TDG+PKDPNYI+RLYMALGNY+Q     +
Sbjct: 1057 VCGNYHKALRLFLQCGESELGRAIDVVGKARNDMLTHTLIDYLMGDTDGIPKDPNYIFRLYMALGNYAQAAKTAI 1131          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A024TWD6_9STRA (Uncharacterized protein n=17 Tax=Aphanomyces TaxID=100860 RepID=A0A024TWD6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.000e-30
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   25 LCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            +CG +H++L+LFLQCG+ E+  AI VVGKARNDMLTHTLID+LMG+TDG+PKDPNYI+RLYMALGNY+Q     +
Sbjct: 1064 VCGNYHKALRLFLQCGEAELGRAIDVVGKARNDMLTHTLIDYLMGDTDGIPKDPNYIFRLYMALGNYAQAAKTAI 1138          
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 9.330e-30
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   28 CGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVCSVCL 249
            CGQHHR+LKL LQ G+ EV +AI VVG+ARNDMLTHTLID+LMGETDGVPKDPN+IYRLY+ALGNY Q     +
Sbjct: 1188 CGQHHRALKLLLQRGEAEVAAAIDVVGRARNDMLTHTLIDYLMGETDGVPKDPNHIYRLYLALGNYQQAAKTAI 1261          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8025.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE11_9PHAE1.000e-3786.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIK0_ECTSI1.020e-3786.84WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
A0A7S1CDP1_9STRA3.460e-3281.43Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2CHE3_9STRA3.850e-3274.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AWF5_9STRA9.520e-3272.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A067CC00_SAPPC7.740e-3170.67Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0A7H3_9STRA1.060e-3070.67Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0XL25_9STRA3.660e-3069.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TWD6_9STRA5.000e-3069.33Uncharacterized protein n=17 Tax=Aphanomyces TaxID... [more]
A0A835ZAW6_9STRA9.330e-3074.32WD repeat membrane protein n=1 Tax=Tribonema minus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8025contigC-tenellus_contig8025:5886..6155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIK0
Preferred nameFAP66
PFAMsANAPC4_WD40,Coatomer_WDAD,WD40_3
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K19671
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.67e-38
EggNOG OGsKOG2247@1|root,KOG2247@2759|Eukaryota
Descriptionmyotome development
Cds size270
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790076.359083-CDS-C-tenellus_contig8025:5885..61551680790076.359083-CDS-C-tenellus_contig8025:5885..6155Choristocarpus tenellus KU2346CDSC-tenellus_contig8025 5886..6155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8025.2.1prot_C-tenellus_contig8025.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8025 5886..6155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8025.2.1

>prot_C-tenellus_contig8025.2.1 ID=prot_C-tenellus_contig8025.2.1|Name=mRNA_C-tenellus_contig8025.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=90bp
MTTCHQTSLCGQHHRSLKLFLQCGKQEVDSAIAVVGKARNDMLTHTLIDF
LMGETDGVPKDPNYIYRLYMALGNYSQVCSVCLNSMFFN*
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mRNA from alignment at C-tenellus_contig8025:5886..6155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8025.2.1 ID=mRNA_C-tenellus_contig8025.2.1|Name=mRNA_C-tenellus_contig8025.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=270bp|location=Sequence derived from alignment at C-tenellus_contig8025:5886..6155+ (Choristocarpus tenellus KU2346)
ATGACCACCTGCCACCAAACCAGCCTGTGTGGCCAGCACCATCGTTCGTT GAAGCTCTTTCTCCAGTGCGGAAAGCAGGAGGTTGACTCTGCGATTGCAG TGGTAGGGAAGGCGAGGAATGACATGCTGACTCACACACTCATTGACTTT CTCATGGGGGAGACAGACGGTGTGCCAAAGGACCCCAATTACATCTACCG CCTCTACATGGCACTTGGGAACTACTCTCAGGTCTGCAGTGTATGTTTAA ACTCCATGTTCTTCAATTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig8025:5886..6155+

>mRNA_C-tenellus_contig8025.2.1 ID=mRNA_C-tenellus_contig8025.2.1|Name=mRNA_C-tenellus_contig8025.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=270bp|location=Sequence derived from alignment at C-tenellus_contig8025:5886..6155+ (Choristocarpus tenellus KU2346)
ATGACCACCTGCCACCAAACCAGCCTGTGTGGCCAGCACCATCGTTCGTT
GAAGCTCTTTCTCCAGTGCGGAAAGCAGGAGGTTGACTCTGCGATTGCAG
TGGTAGGGAAGGCGAGGAATGACATGCTGACTCACACACTCATTGACTTT
CTCATGGGGGAGACAGACGGTGTGCCAAAGGACCCCAATTACATCTACCG
CCTCTACATGGCACTTGGGAACTACTCTCAGGTCTGCAGTGTATGTTTAA
ACTCCATGTTCTTCAATTAA
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