mRNA_C-tenellus_contig7891.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7891.1.1
Unique NamemRNA_C-tenellus_contig7891.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7891.1.1 vs. uniprot
Match: A0A225WX17_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WX17_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.310e-6
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   16 TEVTNDMMEIFAPRLLCLKSINLSSCRQISNLGVRALATSCKSTLTSIDISNCQKLNNEAIAYIGGTIGFGSS---CDILESLSLANCKGISNYALVALGRG 312
            T ++  M+++ A  +  L +++ SSC Q+ + GVR   + C ++LT +++S C  L ++A+ +IGG++G   S   C  L SL ++    I +  L ALG G
Sbjct:   86 TILSVSMLQVLATGIEHLDTLDFSSCSQLLSEGVREFISCCNTSLTRLNLSRCGALTDDALGWIGGSLGPQGSRTRCRRLISLDISYTAAICDRGLAALGEG 187
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BLAST of mRNA_C-tenellus_contig7891.1.1 vs. uniprot
Match: A0A662X6T9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6T9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.910e-6
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   16 TEVTNDMMEIFAPRLLCLKSINLSSCRQISNLGVRALATSCKSTLTSIDISNCQKLNNEAIAYIGGTIGFGSS---CDILESLSLANCKGISNYALVALGRG 312
            T ++  M+++ A  +  L +++ SSC ++ + GVR   + C ++LT +++S C  L ++A+ +IGGT+G   S   C  L SL ++    IS+  L AL  G
Sbjct:  115 TVLSVPMLQVLASGIERLDALDFSSCPKLLSEGVREFISCCNTSLTRLNLSRCAALTDDALGWIGGTLGPQGSRTRCRRLLSLDMSYTSAISDRGLAALSSG 216
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BLAST of mRNA_C-tenellus_contig7891.1.1 vs. uniprot
Match: A0A6G0WXC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXC0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.130e-6
Identity = 32/107 (29.91%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    1 VNLEGTEVTNDMMEIFAPRLLCLKSINLSSCRQISNLGVRALATSCKSTLTSIDISNCQKLNNEAIAYIGGTIGFG---SSCDILESLSLANCKGISNYALVALGRG 312
            ++  G+ V  D++++   RL  L+ ++ S+C  +S   +R     C  TL   ++S+ + +N+EA+A++ GT+G     + C  L SL++A C  + +  L ALG G
Sbjct:  112 LDYSGSIVQKDVLKVLVTRLEDLRDVDFSNCETLSPDILRDFIPCCTHTLEKCNLSHSKLINDEALAWLAGTLGVHGGLTKCGKLVSLNIAQCTLVGDRGLAALGVG 218
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BLAST of mRNA_C-tenellus_contig7891.1.1 vs. uniprot
Match: A0A662WGS7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGS7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.140e-6
Identity = 33/102 (32.35%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   16 TEVTNDMMEIFAPRLLCLKSINLSSCRQISNLGVRALATSCKSTLTSIDISNCQKLNNEAIAYIGGTIGFGSS---CDILESLSLANCKGISNYALVALGRG 312
            T ++  M+++ A  +  L +++ SSC ++ + GVR   + C ++LT +++S C  L ++A+ +IGGT+G   S   C  L SL ++    IS+  L AL  G
Sbjct:  150 TVLSVPMLQVLASGIEHLDALDFSSCLKLLSEGVREFISCCNTSLTRLNLSRCAALTDDALGWIGGTLGPQGSRTRCRRLLSLDMSYTNAISDRGLAALSSG 251
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BLAST of mRNA_C-tenellus_contig7891.1.1 vs. uniprot
Match: D7FGX1_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 5.910e-6
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:   97 QISNLGVRALATSCKSTLTSIDISNCQKLNNEAIAYIGGTIGFGSSCDILESLSLANCKGISNYALVALGR 309
            Q++NLGVRAL   CKSTLTS+D+S+C  LN+E      G       C  +  L+L +C  + N AL+AL +
Sbjct:    3 QLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEVTTK--GVQYIARGCPNMSVLNLYHCGKVKNGALIALSK 71
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BLAST of mRNA_C-tenellus_contig7891.1.1 vs. uniprot
Match: A0A6H5JAP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.170e-5
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 VNLEGTEVTNDMMEIFAPRLLCLKSINLSSCRQISNLGVRALATSC 138
            V+L  TE TN+M+ +FA RL CL++INL+SCRQ++  GV+ +A  C
Sbjct:   98 VDLSRTETTNEMLGVFAARLFCLRTINLTSCRQVTTKGVQYIARGC 143
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7891.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A225WX17_9STRA2.310e-632.35Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A662X6T9_9STRA2.910e-632.35Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A6G0WXC0_9STRA3.130e-629.91Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662WGS7_9STRA3.140e-632.35Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
D7FGX1_ECTSI5.910e-643.66Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A6H5JAP1_9PHAE2.170e-552.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7891contigC-tenellus_contig7891:963..3752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog115417.EPrPW00000019512
PFAMsDUF389,IQ,LRR_6
Model size783
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.69e-08
EggNOG OGsKOG4341@1|root,KOG4341@2759|Eukaryota,1MD7A@121069|Pythiales
DescriptionSource PGD
Cds size783
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7891.1.1prot_C-tenellus_contig7891.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7891 963..3752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790067.377058-CDS-C-tenellus_contig7891:962..11571680790067.377058-CDS-C-tenellus_contig7891:962..1157Choristocarpus tenellus KU2346CDSC-tenellus_contig7891 963..1157 -
1680790067.3890584-CDS-C-tenellus_contig7891:1989..21391680790067.3890584-CDS-C-tenellus_contig7891:1989..2139Choristocarpus tenellus KU2346CDSC-tenellus_contig7891 1990..2139 -
1680790067.4038053-CDS-C-tenellus_contig7891:2435..25191680790067.4038053-CDS-C-tenellus_contig7891:2435..2519Choristocarpus tenellus KU2346CDSC-tenellus_contig7891 2436..2519 -
1680790067.416268-CDS-C-tenellus_contig7891:2782..29441680790067.416268-CDS-C-tenellus_contig7891:2782..2944Choristocarpus tenellus KU2346CDSC-tenellus_contig7891 2783..2944 -
1680790067.4278276-CDS-C-tenellus_contig7891:3124..32171680790067.4278276-CDS-C-tenellus_contig7891:3124..3217Choristocarpus tenellus KU2346CDSC-tenellus_contig7891 3125..3217 -
1680790067.4366505-CDS-C-tenellus_contig7891:3653..37521680790067.4366505-CDS-C-tenellus_contig7891:3653..3752Choristocarpus tenellus KU2346CDSC-tenellus_contig7891 3654..3752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7891.1.1

>prot_C-tenellus_contig7891.1.1 ID=prot_C-tenellus_contig7891.1.1|Name=mRNA_C-tenellus_contig7891.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=261bp
VNLEGTEVTNDMMEIFAPRLLCLKSINLSSCRQISNLGVRALATSCKSTL
TSIDISNCQKLNNEAIAYIGGTIGFGSSCDILESLSLANCKGISNYALVA
LGRGCPKLRFLNLSGCEKVTTSGIKCLVKGCSKIAVLNLSECRKVQEGGL
IALSRHCSGLVSLNVASVGRVTDSSLAALGKGCPTLQAVNIAGAKEVSER
GLCALVQNCRGLHTLNVTGCTEVSLKGLRALIGGIGKLFVEEAKTFFGFL
PRQDMVNQKVQ
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mRNA from alignment at C-tenellus_contig7891:963..3752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7891.1.1 ID=mRNA_C-tenellus_contig7891.1.1|Name=mRNA_C-tenellus_contig7891.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2790bp|location=Sequence derived from alignment at C-tenellus_contig7891:963..3752- (Choristocarpus tenellus KU2346)
GTCAATCTAGAAGGGACTGAAGTCACAAATGACATGATGGAGATATTTGC
ACCACGGCTGTTATGCCTCAAAAGCATCAACCTTTCTTCTTGCCGACAGG
TAAGTTTTGACCAAGAAGTACCCAACAAACCACAATGCAAAAGCATATCA
TCTGCCCGACTTTCATGAGGTCATTTGAAGATGTAGACCCCATTGGGCCT
AAAAAAACTTATTATTGTACCAGCAACGACTCCCAAACAAGCTATATCTC
TCGTGTTGGTTGATTCTCATACTGCCACTACCTAAAGTGATATTTGAAGG
TGTGACACCCTGCTGGAACAAGCAGTTCTTTTGATTCGATGCAACGGCTA
GCAAGGTTTTACTAACCAATTTAGTCCATGAAGAATGGCATTACCTGCAG
GAAATTTGAACTCCTTCACAGTCCACCATATGTCAGAGGAATCTTCCACT
TCAGGAGTTGATCCCAGCTTGTAATCATAGCGGCTAAACCCACTCATAAA
GAATTTCACATTCTATACCCTTCTCTTGCCTACAGATATCAAATCTTGGT
GTTCGGGCCCTTGCTACTTCTTGCAAGAGTACCCTCACCAGCATTGATAT
TTCCAACTGCCAGAAGCTCAATAACGAGGTAACTTGTGGATCTAGAACAT
CTTTGTTTGTACTATTGTGTCCACATTAGTTTTCCTCCTTTTTGCTCAGT
CGCTTATATATCCACAGTACCAAAACCTTTGGATACCATACATAATGTTT
GATCAAGTGGTCCTATCCCTCCCGCAACTCACCTTCTGCAACCAAACACT
GCTTTTAGGCCATTGCATACATTGGAGGCACCATCGGGTTTGGATCCTCA
TGTGATATCCTCGAGTCCTTGTCCTTGGCAAACTGCAAGGGAATTTCTAA
CTATGCCCTGGTGGCCCTTGGTAGAGGGTGCCCAAAGCTGCGCTTCTTGA
ACCTCTCTGGGTGTGAAAAGGTAAGAGCGGAATGTATCAGCAGCAACAAC
TGGCAATGCAGTATTTCACAGCACTCAGGTGTTGGAAACTATGGCAATTG
AAGTCTTCTTGTTGATAAACATTCTTAGATCTATCTTGAAGACATTGCAT
CTCCCAGTTCTCCAGCAGGTCCTTAAGTGTTTATAAAAGATAATGGCATG
TAAAAAGAGTGACTGTAGACCTGTGCTCTGAGTGCAAGGATACGAGACGA
ATGACATGTTGCTAACTGCCTCGGATGTTGCAGGTTACCACCTCTGGGAT
CAAGTGTCTGGTAAAAGGTTGTTCCAAGATTGCAGTCTTGAATTTGTCTG
AGTGCCGAAAAGTGCAGGTGAGAGTCAATACTGTACAACATTTCCTGAAC
AAAATAGAGCATACAGCCTCATTCCAGGGAAAGAGCATACTTCCCTTTGA
ATACTATTTTGAGATGCTGGCAGTACTCACCACAGTAAGATTTCAAGTAA
TATGTCATGGATAGATATAGGTAATATTTATGATAATGCATTGTTCCACC
CTCAAGAACAATGTCTGGAGACCTGTAACACAGGTCATATTCACTACTTT
TATCATCGGTTTCCTCACTGCCTCATTGCAGAATTCGTCGAACACACAAC
AAAACTTACGCAGGAGGGTGGTCTCATAGCCTTGAGCAGACATTGTTCTG
GACTTGTGTCACTCAATGTGGCCAGTGTGGGTCGAGTAACAGACAGTAGT
CTTGCAGCACTGGGGAAAGGATGCCCTACCCTCCAGGCCGTCAACATTGC
CGGGGCCAAAGAGGTAGATCTCATTGCAATCATCACCACCCTGCTGTAGT
CGAGTTTACTTTGACAGCATTTTCTTTGACATAGTCCCCTGCTAACTGCG
ATCCTTAAGTTGTTATAATTGGTAGTATGTTGCTGGACAAACATCCCCCC
CCCCTAGACAGTAGTTGTGTGGGCATTGAAGGGAGGCGACACCAGTGAGT
GAATGGGCACCCTGCAAGTAAGCATAGGTATGCCAACCTAGGGTTAGTTC
TGAGACTGACATTCGATGAAACTTTGAGTGAAAGTATCTTAGGGTTAGGG
CACGAGTCTTTCCCTGTTTGTCCGTTTGGGGCTTGGCTTCCCACGGGTCT
TTCATGACATTTTACCTACTCAAAAAATGTTTTTGAGTAGGTAAAGGTGT
GTCTGGAACAAGGGTATTTATTGGACACTTCCTAACATACACGATATCCA
AAGTCACATCAAAATCGTAACATTGGATTTTGGCCCCCAAACGGACGCGG
CTCTATCCTCTAAGATAATTTTTCTCTTTCAGTTATTGTATCTGATCTCT
TTCCAGTCAACCTCTGCTTTGTGCAACTACGTAGAAATATGTCACTGTAA
GAACGAGCTGAAAGGTAACAAATTCATGACAACCATTATATCATAGTCCC
ACATAGCAGATGTATGATGAAAGCATGCATGAGGTTTGCTTCTTACAGTG
GAGATGTCCTCACCTACGCCATCTTCCCTCTATATTTACTCTAGTTAGAT
CAAATGTTGTCCTTGGGTGGAAACAAGTATATCCTCTGGTGTAATTGTGT
ACCCTGACACAGCTGATATACACTTTCAATTCTTGTGAACACTAGGTTTC
AGAGCGAGGACTGTGTGCCCTGGTCCAGAACTGTCGTGGACTTCACACAC
TCAATGTTACAGGTTGCACGGAGGTTAGCCTGAAGGGACTGCGGGCACTG
ATCGGTGGCATTGGCAAACTATTTGTCGAGGAGGCCAAAACATTTTTTGG
GTTCTTGCCTCGCCAAGACATGGTCAATCAGAAGGTGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7891:963..3752-

>mRNA_C-tenellus_contig7891.1.1 ID=mRNA_C-tenellus_contig7891.1.1|Name=mRNA_C-tenellus_contig7891.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=783bp|location=Sequence derived from alignment at C-tenellus_contig7891:963..3752- (Choristocarpus tenellus KU2346)
GTCAATCTAGAAGGGACTGAAGTCACAAATGACATGATGGAGATATTTGC
ACCACGGCTGTTATGCCTCAAAAGCATCAACCTTTCTTCTTGCCGACAGA
TATCAAATCTTGGTGTTCGGGCCCTTGCTACTTCTTGCAAGAGTACCCTC
ACCAGCATTGATATTTCCAACTGCCAGAAGCTCAATAACGAGGCCATTGC
ATACATTGGAGGCACCATCGGGTTTGGATCCTCATGTGATATCCTCGAGT
CCTTGTCCTTGGCAAACTGCAAGGGAATTTCTAACTATGCCCTGGTGGCC
CTTGGTAGAGGGTGCCCAAAGCTGCGCTTCTTGAACCTCTCTGGGTGTGA
AAAGGTTACCACCTCTGGGATCAAGTGTCTGGTAAAAGGTTGTTCCAAGA
TTGCAGTCTTGAATTTGTCTGAGTGCCGAAAAGTGCAGGAGGGTGGTCTC
ATAGCCTTGAGCAGACATTGTTCTGGACTTGTGTCACTCAATGTGGCCAG
TGTGGGTCGAGTAACAGACAGTAGTCTTGCAGCACTGGGGAAAGGATGCC
CTACCCTCCAGGCCGTCAACATTGCCGGGGCCAAAGAGGTTTCAGAGCGA
GGACTGTGTGCCCTGGTCCAGAACTGTCGTGGACTTCACACACTCAATGT
TACAGGTTGCACGGAGGTTAGCCTGAAGGGACTGCGGGCACTGATCGGTG
GCATTGGCAAACTATTTGTCGAGGAGGCCAAAACATTTTTTGGGTTCTTG
CCTCGCCAAGACATGGTCAATCAGAAGGTGCAG
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