prot_C-tenellus_contig7881.3.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7881.3.1
Unique Nameprot_C-tenellus_contig7881.3.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length489
Homology
[Close]
BLAST of mRNA_C-tenellus_contig7881.3.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.050e-16
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:    8 FCQDFSTYKREGRVGYCFKQFDKRPVEFLYLVPPSLAPQVPLLGRTPAAAAAEEGHLCCMVVT 70
            FCQ+F+ YK +GR GYCFKQFDK+ VEFLYLVPP+LAPQVPLL + PAA    +GHL C+V+T
Sbjct: 1580 FCQEFAAYKNQGRAGYCFKQFDKKHVEFLYLVPPALAPQVPLLAQNPAA----QGHLVCLVIT 1638
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7881.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF7_ECTSI1.050e-1668.25TFIIS central domain-containing protein (Fragment)... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..488
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7881contigC-tenellus_contig7881:1127..3957 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7881.3.1mRNA_C-tenellus_contig7881.3.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7881 818..5048 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7881.3.1 ID=prot_C-tenellus_contig7881.3.1|Name=mRNA_C-tenellus_contig7881.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=489bp
MFFFCRTFCQDFSTYKREGRVGYCFKQFDKRPVEFLYLVPPSLAPQVPLL
GRTPAAAAAEEGHLCCMVVTSYPQQEHLRSPTGPPQSGGMQAPSKAQVRA
VLGPGLIGRPGGVSPAQSMTLSPHSQDVPPLQPPPPPHKASHGHTNNTTN
EGLGALHSHGPAPNLTPVMSSIPHPAPPRAPTAGGGMSTGGGRIGQPSPG
VASTPQFDPHSCPPPQAVSTYAQSQPPVQGSGPSVVANPGVSMPLPPPPP
PPPPPQNCPLSRSDIGGRGSRDGAGAGLPQFSTTAPAGAPGGWEGVRGGG
QLVGLQLPGQVMGTPAADHGKFGVRVETQMGMPQQAAPMTGPPGPLARPP
PPPPPPPPPMVIQPTAPPGGAPQSGGAQWYNSGEASSQHGLHQQMEEVAQ
RVASVGPGELEAMRQLPGARTQHPFIFDDDPGFAKFRVKITDLVMPRLQG
RPGIAAQPPQQQYGHVHSIAPGLGPESTPTHGTDQGHR*
back to top