mRNA_C-tenellus_contig7763.1.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Match: UPI001CB8F406 (uncharacterized membrane protein At3g27390 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8F406) HSP 1 Score: 62.4 bits (150), Expect = 2.880e-6 Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 2 Query: 716 RSIDKGVEGILIGEGLEITEANRPSISLIDLIWTPLQAIRLELIGKNLAPMERDYLRQFVAMGGGVASYWRNESGGQSKALPDLKDEVRRVELHRLASQIYDVAINITRLPMFRRRFGEVIASVL 1090 RSI G EG+++ +GLEIT+ NRP L + + P+ I+ ++ L+ E YL + + G R ES +P+ D VR ++ ++ ++ + ++LP +RRR+ +VI +++ Sbjct: 425 RSIKVGSEGLVLLDGLEITQLNRPQDKLFEWFFHPILVIKEQIRAIQLSEGEIKYLEKVILFG---TDPQRMESWDNGSIVPE--DPVRAAQIQGISRRLLGLTRGASKLPTYRRRYRQVIKNLI 544
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Match: A0A1Q3D6Z2_CEPFO (Uncharacterized protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D6Z2_CEPFO) HSP 1 Score: 61.6 bits (148), Expect = 5.220e-6 Identity = 36/133 (27.07%), Postives = 64/133 (48.12%), Query Frame = 2 Query: 695 CVHPLCGRSIDKGVEGILIGEGLEITEANRPSISLIDLIWTPLQAIRLELIGKNLAPMERDYLRQFVAMGGGVASYWRNESGGQSKALPDLKDEVRRVELHRLASQIYDVAINITRLPMFRRRFGEVIASVLE 1093 C+ + RS+ +G+L+G+G EIT NRP + D P I+ ++ +NL E +Y + V + G G ++ E++R EL LA ++ + +I+R P RR F ++ ++ E Sbjct: 391 CILQMLLRSVKANSQGLLLGDGTEITSTNRPKDTFFDWFLNPFLIIKDQIKAENLNEAEEEYFYKLVLLCGDPERLKNTNIGSPPES------ELKRAELDALARRLQGITRSISRYPTCRRHFECLLKTLSE 517
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Match: UPI001CC7FD4E (uncharacterized membrane protein At3g27390 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC7FD4E) HSP 1 Score: 60.8 bits (146), Expect = 8.690e-6 Identity = 32/125 (25.60%), Postives = 68/125 (54.40%), Query Frame = 2 Query: 716 RSIDKGVEGILIGEGLEITEANRPSISLIDLIWTPLQAIRLELIGKNLAPMERDYLRQFVAMGGGVASYWRNESGGQSKALPDLKDEVRRVELHRLASQIYDVAINITRLPMFRRRFGEVIASVL 1090 RSI G +G+L+ +G+E+ NRP L++ + P+ ++ ++ N+ E ++L + V G + R E+ +P +D +R ++ + ++ +A I++LP +RR+F V+ S++ Sbjct: 423 RSIKFGADGLLLLDGVEVNNLNRPQDRLVEWFFHPVMVLKEQIKVINMVEGEVEFLEKVVLFGSDIK---RMEAWENGSVVP--QDPLRAAQIEGIGRRLIGIATAISKLPSYRRKFQLVVKSLM 542
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Match: UPI0018F83097 (uncharacterized membrane protein At3g27390-like isoform X2 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F83097) HSP 1 Score: 60.5 bits (145), Expect = 1.070e-5 Identity = 31/124 (25.00%), Postives = 66/124 (53.23%), Query Frame = 2 Query: 719 SIDKGVEGILIGEGLEITEANRPSISLIDLIWTPLQAIRLELIGKNLAPMERDYLRQFVAMGGGVASYWRNESGGQSKALPDLKDEVRRVELHRLASQIYDVAINITRLPMFRRRFGEVIASVL 1090 SI G+L+ +G+E+T NRP L+D + P+ ++ ++ NL E +L + + G R E+ LP +D +R ++ ++ ++ + ++++LP +RRRF +V+ +++ Sbjct: 376 SIKVSSNGLLLVDGIEVTNFNRPKDKLLDWFFNPVMVLKEQIRAINLGDNEVRFLEKVILFGSNTR---RMEAWDNGSLLP--QDPLRAAQIQGISRRMTGMVRSVSKLPTYRRRFRQVVKTII 494
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Match: A0A7J7E2P4_TRIWF (Uncharacterized protein n=3 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7E2P4_TRIWF) HSP 1 Score: 60.5 bits (145), Expect = 1.140e-5 Identity = 31/124 (25.00%), Postives = 66/124 (53.23%), Query Frame = 2 Query: 719 SIDKGVEGILIGEGLEITEANRPSISLIDLIWTPLQAIRLELIGKNLAPMERDYLRQFVAMGGGVASYWRNESGGQSKALPDLKDEVRRVELHRLASQIYDVAINITRLPMFRRRFGEVIASVL 1090 SI G+L+ +G+E+T NRP L+D + P+ ++ ++ NL E +L + + G R E+ LP +D +R ++ ++ ++ + ++++LP +RRRF +V+ +++ Sbjct: 423 SIKVSSNGLLLVDGIEVTNFNRPKDKLLDWFFNPVMVLKEQIRAINLGDNEVRFLEKVILFGSNTR---RMEAWDNGSLLP--QDPLRAAQIQGISRRMTGMVRSVSKLPTYRRRFRQVVKTII 541
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Match: S8DML7_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DML7_9LAMI) HSP 1 Score: 58.5 bits (140), Expect = 3.050e-5 Identity = 32/127 (25.20%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 716 RSIDKGVEGILIGEGLEITEANRPSISLIDLIWTPLQAIRLELIGKNLAPMERDYLRQFVAMGGGVASY--WRNESGGQSKALPDLKDEVRRVELHRLASQIYDVAINITRLPMFRRRFGEVIASVL 1090 RSI+ G EG+++ +G E+ + NRP L+D + P+ ++ ++ L E Y+ + V G Y W N S +P KD +R ++ + ++ ++ ++++LP +RR++ +V+ ++ Sbjct: 239 RSIESGSEGLVLVDGTELNQFNRPQDRLLDWFFHPVLVLKEQIRALRLEEGEIGYVEKVVLFGNDKERYASWDNGS-----LVP--KDSLRAAQIEGICRRMTGMSRSVSKLPTYRRKYRQVVRELI 358
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Match: A0A200QJ43_9MAGN (Uncharacterized protein n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QJ43_9MAGN) HSP 1 Score: 58.5 bits (140), Expect = 4.530e-5 Identity = 33/124 (26.61%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 716 RSIDKGVEGILIGEGLEITEANRPSISLIDLIWTPLQAIRLELIGKNLAPMERDYLRQFVAMGGGVASYWRNESGGQSKALPDLKDEVRRVELHRLASQIYDVAINITRLPMFRRRFGEVIASV 1087 SI G G+L+ +G+E+ NRP L+D + P+ ++ ++ NL E +L + V G R ES +P +D VR ++ ++ ++ + +I++ P +RR+FG+V+ ++ Sbjct: 421 HSIKAGSGGLLMVDGVEVNNLNRPQDRLLDWFFHPVMVLKEQIKAINLEESEVRFLEKVVLFG---TDSKRMESWENGCVVP--QDAVRTAQIQGISRRLMGMTRSISKFPTYRRKFGQVVKNL 539 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7763.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7763.1.2 >prot_C-tenellus_contig7763.1.2 ID=prot_C-tenellus_contig7763.1.2|Name=mRNA_C-tenellus_contig7763.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=191bp MSRATLLTLLESPQLWNFSKAVLVCSDSCVHPLCGRSIDKGVEGILIGEGback to top mRNA from alignment at C-tenellus_contig7763:826..4836- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7763.1.2 ID=mRNA_C-tenellus_contig7763.1.2|Name=mRNA_C-tenellus_contig7763.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4011bp|location=Sequence derived from alignment at C-tenellus_contig7763:826..4836- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7763:826..4836- >mRNA_C-tenellus_contig7763.1.2 ID=mRNA_C-tenellus_contig7763.1.2|Name=mRNA_C-tenellus_contig7763.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=573bp|location=Sequence derived from alignment at C-tenellus_contig7763:826..4836- (Choristocarpus tenellus KU2346)back to top |