mRNA_C-tenellus_contig752.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig752.4.1
Unique NamemRNA_C-tenellus_contig752.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig752.4.1 vs. uniprot
Match: D8LM04_ECTSI (CID domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM04_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.770e-30
Identity = 89/210 (42.38%), Postives = 102/210 (48.57%), Query Frame = 1 
Query:  145 ESCVPADERFTKCRICGDRFEMYYDNDEEEWMYANACYVEIHGGGVDGSGEGEGETGLDGDTEGYGLDKLGEGNEATRQIIVHKLCLDVSGLRDREVIRWNDLIPGTPTPKKQSLSSEGESSPDLGLAATDVTWSAPLMAKTEAITTNGAIDTADRHQEWDSAELSSGDKPTHYPPPLGG--------------------GPPLKRVKAE 714
            +SCVPADERF+KCRICGDRF M+YDNDEEEWMY NACYV + GGG                  G      GE     RQIIVHKLCLDVSGLRD++ I W DL+PGTP  KK+   +EG  + D                        G  D A++  E D A  +     TH     GG                    GPPLKR KAE
Sbjct:  451 KSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGEXXXXXXXXXXXXXXXAGGA----PGEAAGGARQIIVHKLCLDVSGLRDKDEITWADLMPGTPRQKKRP--AEGGDALDAAFFG------------------EGGDDAAEQEDEKDGAGETGDSSGTHVSDSGGGHXXXXXXXXXXXXXXXGEDDGPPLKRAKAE 636
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BLAST of mRNA_C-tenellus_contig752.4.1 vs. uniprot
Match: A0A835ZEB3_9STRA (CID domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 9.850e-11
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:  154 VPADERFTKCRICGDRFEMYYDNDEEEWMYANACYVEIHGGGVDGSGE--------GEGETGLDGDTEGYGLDKLGEGNEATRQIIVHKLCLDVSGLRDREVIRWNDLIP----GTPTPKKQSLSSEGE 504
            VPAD+  ++CRICG+ FEM+YD DEEEWM+ NACY  +     + +                              +   A   IIVH+LCLD SG+R+ E++R  +L+P    G    +K+  + +G+
Sbjct:  810 VPADDEQSRCRICGEPFEMFYDGDEEEWMFRNACYANLAPEDANSANTVSLKXXXXXXXXXXXXXXXXXXXXXXAPDSGAAPTAIIVHRLCLDASGVREGELLRVANLLPTTAPGAAGKRKRDAAGDGD 938
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BLAST of mRNA_C-tenellus_contig752.4.1 vs. uniprot
Match: A0A7S2DNV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNV2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.850e-6
Identity = 38/120 (31.67%), Postives = 54/120 (45.00%), Query Frame = 1 
Query:  145 ESCVPADERFTKCRICGDRFEMYYDNDEEEWMYANACYVEIHGGGVDGSGEGEGETGLDGDTEGYGLDKLGEGNEATRQIIVHKLCLDVSGLRDREVIRWNDLIPGTPTPKKQSLSSEGE 504
            E  +  D+  TKCRICG+ FEM+++++ EEWMY NA  V+I                         LD   +       IIVH+ C D   +    +++   L+P TP   KQS  S  E
Sbjct:   40 EVLIVVDQAVTKCRICGEPFEMFWEDEVEEWMYRNAVRVKIQ-------------------ATPDPLDPTSDVTSTAVDIIVHRPCSDA--VSTEGIVQVAQLMPETP---KQSEKSNTE 135
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BLAST of mRNA_C-tenellus_contig752.4.1 vs. uniprot
Match: A0A7S2DR18_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DR18_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.210e-5
Identity = 38/120 (31.67%), Postives = 54/120 (45.00%), Query Frame = 1 
Query:  145 ESCVPADERFTKCRICGDRFEMYYDNDEEEWMYANACYVEIHGGGVDGSGEGEGETGLDGDTEGYGLDKLGEGNEATRQIIVHKLCLDVSGLRDREVIRWNDLIPGTPTPKKQSLSSEGE 504
            E  +  D+  TKCRICG+ FEM+++++ EEWMY NA  V+I                         LD   +       IIVH+ C D   +    +++   L+P TP   KQS  S  E
Sbjct:  229 EVLIVVDQAVTKCRICGEPFEMFWEDEVEEWMYRNAVRVKIQ-------------------ATPDPLDPTSDVTSTAVDIIVHRPCSDA--VSTEGIVQVAQLMPETP---KQSEKSNTE 324
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig752.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM04_ECTSI1.770e-3042.38CID domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZEB3_9STRA9.850e-1133.33CID domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2DNV2_9STRA3.850e-631.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2DR18_9STRA3.210e-531.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig752contigC-tenellus_contig752:14829..16800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LM04
PFAMsCFIA_Pcf11,CTD_bind
Model size1972
Max annot lvl2759|Eukaryota
KEGG koko:K07478,ko:K14400
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005849,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0019899,GO:0030846,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0046483,GO:0070013,GO:0070063,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098787,GO:0098789,GO:0099122,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons1
Evalue1.58e-34
EggNOG OGsKOG2071@1|root,KOG2071@2759|Eukaryota
Descriptiontermination of RNA polymerase II transcription
Cds size759
COG categoryS
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.253328-UTR-C-tenellus_contig752:14828..159751680790042.253328-UTR-C-tenellus_contig752:14828..15975Choristocarpus tenellus KU2346UTRC-tenellus_contig752 14829..15975 -
1680790042.2804704-UTR-C-tenellus_contig752:16734..168001680790042.2804704-UTR-C-tenellus_contig752:16734..16800Choristocarpus tenellus KU2346UTRC-tenellus_contig752 16735..16800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790042.2679126-CDS-C-tenellus_contig752:15975..167341680790042.2679126-CDS-C-tenellus_contig752:15975..16734Choristocarpus tenellus KU2346CDSC-tenellus_contig752 15976..16734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig752.4.1prot_C-tenellus_contig752.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig752 15976..16734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig752.4.1

>prot_C-tenellus_contig752.4.1 ID=prot_C-tenellus_contig752.4.1|Name=mRNA_C-tenellus_contig752.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=253bp
MGAGAGDDGGAAGVSGEAGDEDGGKGESCVPADERFTKCRICGDRFEMYY
DNDEEEWMYANACYVEIHGGGVDGSGEGEGETGLDGDTEGYGLDKLGEGN
EATRQIIVHKLCLDVSGLRDREVIRWNDLIPGTPTPKKQSLSSEGESSPD
LGLAATDVTWSAPLMAKTEAITTNGAIDTADRHQEWDSAELSSGDKPTHY
PPPLGGGPPLKRVKAEELPEVGTKDMGLPFEEDRDGDEGGDVGNSIAPMS
DV*
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mRNA from alignment at C-tenellus_contig752:14829..16800-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig752.4.1 ID=mRNA_C-tenellus_contig752.4.1|Name=mRNA_C-tenellus_contig752.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1972bp|location=Sequence derived from alignment at C-tenellus_contig752:14829..16800- (Choristocarpus tenellus KU2346)
GGGGGGAGGGAGGGGGAGGGGGCAGGGGGAGAGAGCTCTGGTAATGGTGG
CACTGGAGCAGGTGGGATGGGGGCTGGGGCTGGGGATGATGGTGGAGCTG
CTGGTGTCAGTGGTGAGGCTGGGGACGAGGATGGGGGCAAGGGGGAGTCC
TGTGTTCCAGCAGATGAACGTTTCACCAAGTGCCGCATATGTGGGGATCG
TTTTGAGATGTACTATGATAATGATGAAGAGGAGTGGATGTACGCTAATG
CCTGTTATGTGGAAATCCACGGGGGAGGGGTAGATGGATCAGGTGAGGGT
GAAGGGGAGACAGGATTGGATGGGGACACAGAGGGGTATGGGCTTGATAA
ACTTGGGGAAGGCAATGAAGCAACGCGGCAAATCATTGTGCACAAACTTT
GCCTTGATGTCAGTGGCCTGCGAGACAGAGAGGTCATTAGATGGAATGAT
CTTATCCCGGGAACACCAACCCCAAAAAAGCAATCATTATCGTCTGAGGG
AGAAAGTAGTCCAGACCTAGGGCTTGCAGCAACAGATGTAACTTGGTCGG
CACCTTTGATGGCCAAGACAGAGGCCATTACTACAAATGGTGCCATTGAC
ACAGCTGACAGGCATCAAGAATGGGATAGTGCTGAGCTGAGCTCAGGTGA
TAAACCAACTCACTACCCTCCACCTTTGGGAGGAGGCCCGCCTCTGAAGC
GTGTCAAGGCTGAGGAATTGCCAGAAGTGGGGACAAAGGATATGGGACTG
CCATTTGAGGAGGATCGAGATGGGGACGAAGGTGGCGATGTGGGGAACAG
TATTGCACCAATGAGCGATGTTTGACATTTTTGTGTTTTGTAATGCATGA
GCCCATATACATATATTTTTCTCCCTTGTTGATGTTGACTCTGGGGCTAC
ACAGGGATGCCATGTGTTTGCCAAAGATGAGTAAATGATGACAGGAAGGG
GATACGGACGGTTGCTTTGATTTTAATTAATATGAACAAATACATTATTT
TTGTGGTCAAATTTATTTCGAGATGCAATTCCTCTCTCACGAAAGGCTGT
CCTCTGTACCAATTAGGAGACTCTGCTGAAAATGGAATTCCTGTGATGCA
TGTGCAATTTTATGTCACCCTTTTTCTTACTCTTATCTATTTCCATGCTA
CTGATTGTTGTTCCTAGTATTTTGATTCCCATACAAACACTGGAACCTGG
TTGTGTGTAGTTGAGGTGATGATAAGAGTTGACCCCCCCAGTTAATCCGC
CAATGTCCTTGTCAAATAGTAAGTCAAGCATCTGTTTCATTCATTGCCCC
CCCTCCTCTAACACAATGAAGAACATGGAACTGCTGCCACATCAGCAGCT
AGATTGAGACATTGATAGATTCTACAGAGAGAGTTGGTTCATAGAGCAGA
ATACTGTGGAGAGGATATGCCCGTGACGATCATGGTTCCTATTGCACATG
TTGGTCCTTGACACATATTAGCACCATATCAGACGGGTGATTTGGAGGGG
CCTCAACCGCCTAGTGCTGACTATCTCTCACTTTGCAACAGGTAGAAGAT
TTGTACCCATGATTGTTGGGAGGGGGGAGGTGGAAACTTCTAGACCGTCA
GAGGGTGACATTGGATCAGTGTGAAAGACAAATTGATGCAGACATTCGTT
TTCTCACAAAGGTCGGACGAGGTGGGGCTTAGAGTCAGAAACGAGTTCAG
ATGGCTGTGGGGTATTGTATAGTGATTCCTGTTTGCTGCACATTCTCAAG
TATGTTGTTGGGTACACATATTGTCATCTGTTTCTGCCAGGCAAGATGGG
CAGAGGGGTTTCCTTTCACCCTTTGCTTTAGGGTATTCGGAAATTGGTTG
TTGTGGTTGTTTGGCTGTTGTGTATTTGTTGGATAGATGCTGTTTGGAAT
AGGTAGCAAACCTGTGACGACTGGCTTGCTTCATCTTCTGTGGGACAACT
GTAACCCATTGAACAATATTCA
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Coding sequence (CDS) from alignment at C-tenellus_contig752:14829..16800-

>mRNA_C-tenellus_contig752.4.1 ID=mRNA_C-tenellus_contig752.4.1|Name=mRNA_C-tenellus_contig752.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=759bp|location=Sequence derived from alignment at C-tenellus_contig752:14829..16800- (Choristocarpus tenellus KU2346)
ATGGGGGCTGGGGCTGGGGATGATGGTGGAGCTGCTGGTGTCAGTGGTGA
GGCTGGGGACGAGGATGGGGGCAAGGGGGAGTCCTGTGTTCCAGCAGATG
AACGTTTCACCAAGTGCCGCATATGTGGGGATCGTTTTGAGATGTACTAT
GATAATGATGAAGAGGAGTGGATGTACGCTAATGCCTGTTATGTGGAAAT
CCACGGGGGAGGGGTAGATGGATCAGGTGAGGGTGAAGGGGAGACAGGAT
TGGATGGGGACACAGAGGGGTATGGGCTTGATAAACTTGGGGAAGGCAAT
GAAGCAACGCGGCAAATCATTGTGCACAAACTTTGCCTTGATGTCAGTGG
CCTGCGAGACAGAGAGGTCATTAGATGGAATGATCTTATCCCGGGAACAC
CAACCCCAAAAAAGCAATCATTATCGTCTGAGGGAGAAAGTAGTCCAGAC
CTAGGGCTTGCAGCAACAGATGTAACTTGGTCGGCACCTTTGATGGCCAA
GACAGAGGCCATTACTACAAATGGTGCCATTGACACAGCTGACAGGCATC
AAGAATGGGATAGTGCTGAGCTGAGCTCAGGTGATAAACCAACTCACTAC
CCTCCACCTTTGGGAGGAGGCCCGCCTCTGAAGCGTGTCAAGGCTGAGGA
ATTGCCAGAAGTGGGGACAAAGGATATGGGACTGCCATTTGAGGAGGATC
GAGATGGGGACGAAGGTGGCGATGTGGGGAACAGTATTGCACCAATGAGC
GATGTTTGA
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