mRNA_C-tenellus_contig1195.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1195.6.1
Unique NamemRNA_C-tenellus_contig1195.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1195.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1195contigC-tenellus_contig1195:5435..6039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size605
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789201.4228363-UTR-C-tenellus_contig1195:5434..55821680789201.4228363-UTR-C-tenellus_contig1195:5434..5582Choristocarpus tenellus KU2346UTRC-tenellus_contig1195 5435..5582 +
1680789201.4444802-UTR-C-tenellus_contig1195:6029..60391680789201.4444802-UTR-C-tenellus_contig1195:6029..6039Choristocarpus tenellus KU2346UTRC-tenellus_contig1195 6030..6039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789201.4357293-CDS-C-tenellus_contig1195:5582..60291680789201.4357293-CDS-C-tenellus_contig1195:5582..6029Choristocarpus tenellus KU2346CDSC-tenellus_contig1195 5583..6029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1195.6.1prot_C-tenellus_contig1195.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1195 5583..6029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1195.6.1

>prot_C-tenellus_contig1195.6.1 ID=prot_C-tenellus_contig1195.6.1|Name=mRNA_C-tenellus_contig1195.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=149bp
MKMLEISASNRTLTIDKLPTMLVEMGLMVSSSKLHCWLEAMGATRVHRCV
TCSLSFSHKKYRVHFILSQISRNRKTYSTGLNIVHIDEAWFYLIHERETA
RMFVGRNRWAQQTFSTRVIFLKWCSPPPFCTLILPMISTARVESDRFA*
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mRNA from alignment at C-tenellus_contig1195:5435..6039+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1195.6.1 ID=mRNA_C-tenellus_contig1195.6.1|Name=mRNA_C-tenellus_contig1195.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=605bp|location=Sequence derived from alignment at C-tenellus_contig1195:5435..6039+ (Choristocarpus tenellus KU2346)
GGTTTAAATTGGCGAAAGAGTTTGGAGTGGGAGAGAGACACCCTAGACGA
GTGTGGGCACGTATCAAAGAATAGACGGGGAATACCATCTCCCTGAAATC
ACAAGTACTACAATCTGGACAGTCGTCGGACTTTAAGCCAGCAAACATAT
GAAGATGCTGGAAATCAGCGCCAGTAATCGCACTCTGACTATCGACAAAC
TTCCCACCATGCTCGTTGAAATGGGCCTCATGGTCAGCAGCTCAAAGCTT
CATTGCTGGCTTGAAGCCATGGGGGCAACGAGGGTTCATCGGTGTGTTAC
CTGTAGCCTTTCGTTTTCTCACAAGAAGTACAGGGTGCACTTCATCCTCA
GTCAGATATCCCGCAACCGCAAAACCTACAGTACTGGCCTAAACATCGTT
CACATCGATGAGGCGTGGTTCTACCTCATCCACGAACGAGAGACGGCGCG
CATGTTCGTGGGGAGGAATAGGTGGGCTCAACAAACATTCAGCACAAGAG
TCATATTCCTGAAGTGGTGTTCACCTCCGCCATTTTGCACCCTGATCCTT
CCCATGATTTCGACAGCAAGAGTGGAATCTGATAGGTTTGCATGATGAAG
GAGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig1195:5435..6039+

>mRNA_C-tenellus_contig1195.6.1 ID=mRNA_C-tenellus_contig1195.6.1|Name=mRNA_C-tenellus_contig1195.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=447bp|location=Sequence derived from alignment at C-tenellus_contig1195:5435..6039+ (Choristocarpus tenellus KU2346)
ATGAAGATGCTGGAAATCAGCGCCAGTAATCGCACTCTGACTATCGACAA
ACTTCCCACCATGCTCGTTGAAATGGGCCTCATGGTCAGCAGCTCAAAGC
TTCATTGCTGGCTTGAAGCCATGGGGGCAACGAGGGTTCATCGGTGTGTT
ACCTGTAGCCTTTCGTTTTCTCACAAGAAGTACAGGGTGCACTTCATCCT
CAGTCAGATATCCCGCAACCGCAAAACCTACAGTACTGGCCTAAACATCG
TTCACATCGATGAGGCGTGGTTCTACCTCATCCACGAACGAGAGACGGCG
CGCATGTTCGTGGGGAGGAATAGGTGGGCTCAACAAACATTCAGCACAAG
AGTCATATTCCTGAAGTGGTGTTCACCTCCGCCATTTTGCACCCTGATCC
TTCCCATGATTTCGACAGCAAGAGTGGAATCTGATAGGTTTGCATGA
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