mRNA_C-tenellus_contig1195.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1195.4.1
Unique NamemRNA_C-tenellus_contig1195.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1195.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1195contigC-tenellus_contig1195:3420..5214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5334.XP_003030497.1
PFAMsDDE_3
Model size1207
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.77e-06
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi,3V3KF@5204|Basidiomycota,22BN5@155619|Agaricomycetes,3W6P4@5338|Agaricales
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789201.352141-UTR-C-tenellus_contig1195:3419..34991680789201.352141-UTR-C-tenellus_contig1195:3419..3499Choristocarpus tenellus KU2346UTRC-tenellus_contig1195 3420..3499 +
1680789201.3638074-UTR-C-tenellus_contig1195:3687..40501680789201.3638074-UTR-C-tenellus_contig1195:3687..4050Choristocarpus tenellus KU2346UTRC-tenellus_contig1195 3688..4050 +
1680789201.3937328-UTR-C-tenellus_contig1195:4873..52141680789201.3937328-UTR-C-tenellus_contig1195:4873..5214Choristocarpus tenellus KU2346UTRC-tenellus_contig1195 4874..5214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789201.3745468-CDS-C-tenellus_contig1195:4050..41671680789201.3745468-CDS-C-tenellus_contig1195:4050..4167Choristocarpus tenellus KU2346CDSC-tenellus_contig1195 4051..4167 +
1680789201.3852737-CDS-C-tenellus_contig1195:4567..48731680789201.3852737-CDS-C-tenellus_contig1195:4567..4873Choristocarpus tenellus KU2346CDSC-tenellus_contig1195 4568..4873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1195.4.1prot_C-tenellus_contig1195.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1195 4051..4873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1195.4.1

>prot_C-tenellus_contig1195.4.1 ID=prot_C-tenellus_contig1195.4.1|Name=mRNA_C-tenellus_contig1195.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=141bp
MGLLRPCNTRGRDGPTFSQRGSRRSAGKSRVSTESRGKKEIGLSIAGTTK
DGGEGKNINAFMMCMLGDQPELKVIEPSIKILVERLDGYCQMLPKYLCKL
DPIEVIWGWGKEYLMKTTLTIWREWGLNIPICLLDGDLKV*
back to top

mRNA from alignment at C-tenellus_contig1195:3420..5214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1195.4.1 ID=mRNA_C-tenellus_contig1195.4.1|Name=mRNA_C-tenellus_contig1195.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1795bp|location=Sequence derived from alignment at C-tenellus_contig1195:3420..5214+ (Choristocarpus tenellus KU2346)
TTCCCCTGCAGAAATTCAGATATATAACCGCACCATAGTGGATAACCAAC
GTTTGCCAGTCCTCGCCTCCTCTTCGAGACCACCTGGGCGCATCGAAAGG
GAAGCATGATAATGTCGTAGACTGGGTATGCCTCAATTTCTAGTATGTAT
TTCAACTTCAATAGTAGTACAACTCTCATTCTATTCATATATTCTTAGTT
GATACAATACAATTCACTTCTCGACATTTGAAAACCAAAGTATGACATGT
ACTTGGTCAACAGAAACACACCCATCACTCCAGTGTGTTGGTGGATGCTT
GGCATCCAAAACATGAATATTCTCTTGAAAGGCTAGGATATTGACATAGT
CGAAGAATCTCTGCCTCCATTATTGGAGTATTCTCTGTGCATATATCACT
AGTGGGGAAAGGGTATTGACTGACGATCTACAATCGTCGTCAATCACCGA
ATTCCAATGAAGGAGTCCTACTCTATGAAGCAAAGAAAGGAAAGCTACAC
TGCGAACGGAATGAGGAGAGTGTCTTCTTAAAGAGTCTGAACGTCGAGGG
GTGACTGGAGATAATGGGGAATAGGAAGCGTGGTAGTGATTGCGCATCAA
GTACACAAGTCGCAGAAGAGGCCACCGTAGGATGGGACTTTTGCGCCCGT
GCAACACTCGAGGAAGGGACGGACCAACTTTCTCGCAAAGAGGTTCGCGG
AGGTCAGCGGGAAAGAGCAGGGTATCCACGGAAAGTCGTGGGAAGAAGGT
GAGGGTAAACGTCTTCAAGGAGTACAGACTCAAAGTATCTGATGGGGGGG
AGGGAAGGGTCTACACCAGGGTGTTCATTTGGGTCATATCCAGGAAAAGT
GCACATACATTAACCATCCGACGTATGCAACCAAACCACCCAAAATTCGC
GACATGGAAAAAAATGGCCCCAAATGGACAGCCGCCACCCCCCCCAGATA
CTTTGAGACTGATCAGAGGAAGGGGATAAAACTGCCCCCTCTGAATCCCA
CCAAGTTGCTGACAGACACATTTCTTTTTATGTCTAGAATGCTGCAAACC
CTTACTTTCGGGCAGGGAGATGAGAACCAATAGATCGTCCATACATCCAC
AATGAGAACTGCGTGCATCATGTAAAGCGGATGAACCATGTGTTGCAGGA
GATAGGGCTGTCTATAGCAGGAACAACCAAGGATGGAGGGGAGGGGAAGA
ACATCAACGCGTTCATGATGTGCATGCTTGGAGATCAGCCAGAGTTGAAA
GTAATAGAACCTAGCATCAAGATCCTGGTTGAGCGTCTGGATGGATACTG
CCAGATGCTTCCAAAGTATCTTTGCAAGCTGGACCCCATTGAAGTGATCT
GGGGTTGGGGTAAGGAATATCTGATGAAAACAACACTTACAATTTGGAGG
GAATGGGGACTTAACATTCCCATCTGTTTGCTGGATGGGGACTTGAAAGT
GTGATAGTCCAGAAATACTTCAGGAAGGCCCAGGTCTACCACCTACCTTG
TGGCAGACAAAACTGTATGGAGACTGTCAACCTTGATGTTGAGTACAAGT
ACAATTCATGCTGCAGACCTTGCCCTTTGGTGTACGTTGTGTAGAGAGCA
GGAACAAAAATAACACTACTCCCTTTGAACCTGAAGTCTGGGCTGTGAAG
TTGTACCTCTTCGGGATGACCTCTGATTACAAAACGGACTGTTGTGTTGG
ATTCCTTGGAATATTTTATATTGAAGAACTGAATTTCAAAGAATTATACA
AAGAATTCTGTTCTGAAATGGTTCCCAAACAATGGAACACAGAAT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1195:3420..5214+

>mRNA_C-tenellus_contig1195.4.1 ID=mRNA_C-tenellus_contig1195.4.1|Name=mRNA_C-tenellus_contig1195.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=423bp|location=Sequence derived from alignment at C-tenellus_contig1195:3420..5214+ (Choristocarpus tenellus KU2346)
ATGGGACTTTTGCGCCCGTGCAACACTCGAGGAAGGGACGGACCAACTTT
CTCGCAAAGAGGTTCGCGGAGGTCAGCGGGAAAGAGCAGGGTATCCACGG
AAAGTCGTGGGAAGAAGGAGATAGGGCTGTCTATAGCAGGAACAACCAAG
GATGGAGGGGAGGGGAAGAACATCAACGCGTTCATGATGTGCATGCTTGG
AGATCAGCCAGAGTTGAAAGTAATAGAACCTAGCATCAAGATCCTGGTTG
AGCGTCTGGATGGATACTGCCAGATGCTTCCAAAGTATCTTTGCAAGCTG
GACCCCATTGAAGTGATCTGGGGTTGGGGTAAGGAATATCTGATGAAAAC
AACACTTACAATTTGGAGGGAATGGGGACTTAACATTCCCATCTGTTTGC
TGGATGGGGACTTGAAAGTGTGA
back to top