mRNA_C-tenellus_contig7317.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7317.3.1
Unique NamemRNA_C-tenellus_contig7317.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7317.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7317contigC-tenellus_contig7317:3886..4958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.4442527-CDS-C-tenellus_contig7317:3885..42241680790028.4442527-CDS-C-tenellus_contig7317:3885..4224Choristocarpus tenellus KU2346CDSC-tenellus_contig7317 3886..4224 +
1680790028.4545107-CDS-C-tenellus_contig7317:4904..49581680790028.4545107-CDS-C-tenellus_contig7317:4904..4958Choristocarpus tenellus KU2346CDSC-tenellus_contig7317 4905..4958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7317.3.1prot_C-tenellus_contig7317.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7317 3886..4958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7317.3.1

>prot_C-tenellus_contig7317.3.1 ID=prot_C-tenellus_contig7317.3.1|Name=mRNA_C-tenellus_contig7317.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=131bp
PTCILFERYYFLTIRSLGATEEPPSTKLLSVLRLGVGETEIMILAGVVVV
GIFQATNCLGFVHTPRNPSFGLQQQVAFRNNVWSGDRTWIGFKRGRAVAA
MNAVGVEEEVDAVVIGAGIGGLTCAALLAKV
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mRNA from alignment at C-tenellus_contig7317:3886..4958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7317.3.1 ID=mRNA_C-tenellus_contig7317.3.1|Name=mRNA_C-tenellus_contig7317.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1073bp|location=Sequence derived from alignment at C-tenellus_contig7317:3886..4958+ (Choristocarpus tenellus KU2346)
CCTACCTGTATCCTCTTCGAACGGTACTATTTTCTTACAATCAGAAGCTT
GGGAGCCACCGAGGAGCCTCCATCTACGAAATTACTCTCCGTACTGAGAC
TCGGAGTAGGGGAGACAGAGATCATGATCCTTGCTGGAGTTGTTGTGGTC
GGGATTTTCCAGGCGACTAATTGCCTAGGGTTTGTCCACACGCCTCGCAA
CCCCTCCTTTGGTTTACAGCAGCAGGTAGCCTTTCGAAATAATGTTTGGT
CTGGAGATAGAACTTGGATTGGCTTCAAACGAGGGAGGGCTGTGGCCGCC
ATGAACGCAGTTGGGGTGGAGGAGGAAGTAGACGCGGTGGTGAGTTCGTA
TTCCCCGATCTATTATAGGATTGTTGGCCTTTGCACTACTTTGAATGTTT
GGATCACAGAGGATATACCCTATCCTACTCTCTTGGAAGGAGGTGTACTC
TATCCATAAACGTTTGGTTGCATCTATGGTGTGTCTCGTTAATGACCGGA
TCGAAACTCCTGTTCTGTATCTGGCACGTTCCCCTGCCGTACGCATGTTC
TATTCGCCATAATACGCGCTTTGGTAGCCACCTTCGATCATACCGCAGGG
AAAGACAATAGAGATAAGAAAACATTGTCACGATGGATGTGAGGTGGGGT
TAGGGTAGAGGTAGAGGTCACTTCACCAACTACTGGTCATTCATTCAACA
TGCCCCACCCAGAATTATCTCCTGATCTGGCGCTCTTACCTGGATCCCGT
AGCTTCATCCTATGGCTTAACCACAAATGTTGCCCTTGTAAAGTCTGAGG
CTCAGGTTCTTGTCCCCTCCTGAAGTGACATGGTATTTTAATGTTGGTGC
TCAGTCAAATTACTGCCGCCCTTGGTATCTCATCTCTTGCCCCACAGTAA
AAAGCTTGACACTCGACCAGCAGTGGCAGTAATAATGTGTGTATGTGTTG
TGCTGTAGTATCACTATTGTGGGTTCACCTCTCAACATCCACACCCCACC
CCACCCCACCTTTTTGAAGGTCATCGGTGCCGGGATTGGAGGCCTTACCT
GCGCGGCATTGCTTGCAAAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig7317:3886..4958+

>mRNA_C-tenellus_contig7317.3.1 ID=mRNA_C-tenellus_contig7317.3.1|Name=mRNA_C-tenellus_contig7317.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=393bp|location=Sequence derived from alignment at C-tenellus_contig7317:3886..4958+ (Choristocarpus tenellus KU2346)
CCTACCTGTATCCTCTTCGAACGGTACTATTTTCTTACAATCAGAAGCTT
GGGAGCCACCGAGGAGCCTCCATCTACGAAATTACTCTCCGTACTGAGAC
TCGGAGTAGGGGAGACAGAGATCATGATCCTTGCTGGAGTTGTTGTGGTC
GGGATTTTCCAGGCGACTAATTGCCTAGGGTTTGTCCACACGCCTCGCAA
CCCCTCCTTTGGTTTACAGCAGCAGGTAGCCTTTCGAAATAATGTTTGGT
CTGGAGATAGAACTTGGATTGGCTTCAAACGAGGGAGGGCTGTGGCCGCC
ATGAACGCAGTTGGGGTGGAGGAGGAAGTAGACGCGGTGGTCATCGGTGC
CGGGATTGGAGGCCTTACCTGCGCGGCATTGCTTGCAAAGGTG
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