mRNA_C-tenellus_contig7230.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7230.2.1
Unique NamemRNA_C-tenellus_contig7230.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7230.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7230contigC-tenellus_contig7230:1617..2263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size347
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790021.2292614-CDS-C-tenellus_contig7230:1617..18521680790021.2292614-CDS-C-tenellus_contig7230:1617..1852Choristocarpus tenellus KU2346CDSC-tenellus_contig7230 1618..1852 -
1680790021.2399473-CDS-C-tenellus_contig7230:2153..22631680790021.2399473-CDS-C-tenellus_contig7230:2153..2263Choristocarpus tenellus KU2346CDSC-tenellus_contig7230 2154..2263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7230.2.1prot_C-tenellus_contig7230.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7230 1618..2263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7230.2.1

>prot_C-tenellus_contig7230.2.1 ID=prot_C-tenellus_contig7230.2.1|Name=mRNA_C-tenellus_contig7230.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp
SFATIEAWSASGNAEATSARKVVDPKCVKPEVAGLSRPRSISPDSVKLLS
HNMSLDIAPAAHTSCDLPPQSPLQKSLLSSLQIQEQQNKQHGDLHVVHGL
LAQRSCSPSNTTTDT
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mRNA from alignment at C-tenellus_contig7230:1617..2263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7230.2.1 ID=mRNA_C-tenellus_contig7230.2.1|Name=mRNA_C-tenellus_contig7230.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=647bp|location=Sequence derived from alignment at C-tenellus_contig7230:1617..2263- (Choristocarpus tenellus KU2346)
TCCTTTGCAACAATTGAAGCATGGTCGGCTTCAGGAAATGCAGAAGCAAC
ATCAGCAAGGAAAGTTGTGGATCCAAAGTGTGTAAAGCCAGAGGTAGCAG
GGTTGAGCCGGTGAGCCTTGTTTGGAAACTCTAGACTTTACTCATCCATC
CTCTCTTTTCTCCCTCCCCTTCCCCTAACTTGAGGGTATGAGTGTACTGG
TTCTGAGGTGACCAAGGCTATAGTAGAGGTATTTTTGTTGAAGGAAGTGG
ACTGACATCTTGACTATATAGAACACACCTGCTGTCTTCCATCTGTGTCT
TTTTGGAATTTGTTTTGTTATTTGCTACCTGCTTGTTAATTGACCCTATC
TCAACTTGCTGACCTTCTGGTGCCAATAACCTGTGCCTTCAACCCCACTC
CCACCGTCCAGCCCTAGAAGCATCTCTCCAGATTCAGTGAAGCTGCTATC
TCACAATATGAGCTTGGACATCGCCCCTGCTGCCCACACCAGTTGCGACC
TCCCTCCCCAAAGTCCACTCCAGAAATCACTGCTGTCTTCACTACAAATC
CAAGAACAGCAGAATAAGCAGCATGGCGATCTACATGTAGTCCATGGACT
CCTGGCACAACGGTCATGTTCCCCATCAAACACTACCACAGACACCC
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Coding sequence (CDS) from alignment at C-tenellus_contig7230:1617..2263-

>mRNA_C-tenellus_contig7230.2.1 ID=mRNA_C-tenellus_contig7230.2.1|Name=mRNA_C-tenellus_contig7230.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig7230:1617..2263- (Choristocarpus tenellus KU2346)
TCCTTTGCAACAATTGAAGCATGGTCGGCTTCAGGAAATGCAGAAGCAAC
ATCAGCAAGGAAAGTTGTGGATCCAAAGTGTGTAAAGCCAGAGGTAGCAG
GGTTGAGCCGCCCTAGAAGCATCTCTCCAGATTCAGTGAAGCTGCTATCT
CACAATATGAGCTTGGACATCGCCCCTGCTGCCCACACCAGTTGCGACCT
CCCTCCCCAAAGTCCACTCCAGAAATCACTGCTGTCTTCACTACAAATCC
AAGAACAGCAGAATAAGCAGCATGGCGATCTACATGTAGTCCATGGACTC
CTGGCACAACGGTCATGTTCCCCATCAAACACTACCACAGACACC
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