mRNA_C-tenellus_contig7126.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7126.2.1
Unique NamemRNA_C-tenellus_contig7126.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7126.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7126contigC-tenellus_contig7126:2763..3581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size514
Hectar predicted targeting categorychloroplast
Exons3
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790014.2392914-UTR-C-tenellus_contig7126:2762..29841680790014.2392914-UTR-C-tenellus_contig7126:2762..2984Choristocarpus tenellus KU2346UTRC-tenellus_contig7126 2763..2984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790014.2528694-CDS-C-tenellus_contig7126:2984..31451680790014.2528694-CDS-C-tenellus_contig7126:2984..3145Choristocarpus tenellus KU2346CDSC-tenellus_contig7126 2985..3145 +
1680790014.2637668-CDS-C-tenellus_contig7126:3308..33561680790014.2637668-CDS-C-tenellus_contig7126:3308..3356Choristocarpus tenellus KU2346CDSC-tenellus_contig7126 3309..3356 +
1680790014.2750468-CDS-C-tenellus_contig7126:3499..35811680790014.2750468-CDS-C-tenellus_contig7126:3499..3581Choristocarpus tenellus KU2346CDSC-tenellus_contig7126 3500..3581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7126.2.1prot_C-tenellus_contig7126.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7126 2985..3581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7126.2.1

>prot_C-tenellus_contig7126.2.1 ID=prot_C-tenellus_contig7126.2.1|Name=mRNA_C-tenellus_contig7126.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=97bp
MSTMGHVGLTFALATLIRSSNVGAFVPGVGCGIRRTGGHSTRIVTSCGSA
TSESLKREVGSQSTSSTNHGNPNGDSNGDTLRLKCPVDLIRISPPAG
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mRNA from alignment at C-tenellus_contig7126:2763..3581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7126.2.1 ID=mRNA_C-tenellus_contig7126.2.1|Name=mRNA_C-tenellus_contig7126.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=819bp|location=Sequence derived from alignment at C-tenellus_contig7126:2763..3581+ (Choristocarpus tenellus KU2346)
GACCCACCTTCGATTTTCATGCGGTCTTGATTAGGTCGAGAAGGAGACTT
GCTCATGCACTCATGTGCTAGCTAAAAAAGAGGTAGCTTCGACCATCTGC
TTTAGGAAAACCTCTGAGCGCTGACTGGTGGAGCCATTTTGAACGATTAC
TCCCGTAGTTGGAGGGATCAACGTGTGTGCGGCACCTGAGCCTCAAGCAA
GCATTTCGTTTGGGAAAGCTGCATGTCCACCATGGGGCATGTTGGCTTGA
CATTTGCACTGGCCACCCTCATCAGATCTAGTAATGTTGGTGCATTTGTA
CCTGGAGTGGGATGCGGGATACGCAGAACAGGGGGACATAGCACACGCAT
AGTCACGTCCTGTGGCTCGGCAACATCAGAAAGGTAACAATGCTGTCTGT
GTTTTGGGGGCTGTTTTTTTCACGTACTTGCTGGACCCAATTGTATTCCT
TCCTCCCTCCTTCCCGATGGGCAGTCACCCTCCCCCCTACTCCCCCCTTG
GCGTGGTTCTCTTCCCCCGACATCTCGACCTCTACTCTTGCCCCAGCTTG
AAGCGAGAAGTAGGAAGCCAGAGCACCTCCAGCACTAACCACGGGTGAGC
GTTGTGAGGGATATCACGAATCCCCTGCCCAGTTTAGATTACTTAGACAA
GGAAAATGTGTATTTGTCTGTTATTTGGCCACCACACATCACATTCCGTG
CCCTACCTCTTGCATGTCTCTTCTTCTGTTTCCACAGTAACCCCAACGGG
GACTCCAATGGCGACACTCTTCGACTAAAATGCCCAGTGGATCTCATCCG
CATTTCACCACCTGCTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7126:2763..3581+

>mRNA_C-tenellus_contig7126.2.1 ID=mRNA_C-tenellus_contig7126.2.1|Name=mRNA_C-tenellus_contig7126.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=291bp|location=Sequence derived from alignment at C-tenellus_contig7126:2763..3581+ (Choristocarpus tenellus KU2346)
ATGTCCACCATGGGGCATGTTGGCTTGACATTTGCACTGGCCACCCTCAT
CAGATCTAGTAATGTTGGTGCATTTGTACCTGGAGTGGGATGCGGGATAC
GCAGAACAGGGGGACATAGCACACGCATAGTCACGTCCTGTGGCTCGGCA
ACATCAGAAAGCTTGAAGCGAGAAGTAGGAAGCCAGAGCACCTCCAGCAC
TAACCACGGTAACCCCAACGGGGACTCCAATGGCGACACTCTTCGACTAA
AATGCCCAGTGGATCTCATCCGCATTTCACCACCTGCTGGG
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