mRNA_C-tenellus_contig7098.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7098.2.1
Unique NamemRNA_C-tenellus_contig7098.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: UPI001F00A048 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F00A048)

HSP 1 Score: 62.0 bits (149), Expect = 3.990e-8
Identity = 44/122 (36.07%), Postives = 60/122 (49.18%), Query Frame = 1
Query:   28 TSVGVGREREEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFC-IAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFSLLDGVLNFTRDPGC 390
            T + V RE  EW++D+AAS HVT    + T YK   G+  VV    +SF  + G GD+ I    + +    I L++V HVPDL  NL S  A   +G    F  S + L  G +   R   C
Sbjct:  112 TCLHVSREDTEWVVDTAASYHVTPHKEYFTTYK--AGDFGVVKMGNSSFSDVVGIGDVQI----KTSSGSTITLKDVRHVPDLRLNLLSVAALDKQGYDNNFGKSIWKLSRGAMTVARGHIC 227          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A6H5GIV9_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GIV9_9HEMI)

HSP 1 Score: 61.6 bits (148), Expect = 4.910e-8
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1
Query:   22 LVTSVGVGREREEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFCIAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIF 330
            LV +  V      W++DSAAS H+T     +TN       + V+ A+      A  GD+ I+F   D  + E+++ NV++VPDL  NL S  A   KG + IF
Sbjct:   70 LVAAFMVSASDTTWLVDSAASGHMTGRKDWLTNSSTANSGQTVLLANGQQLTTAESGDVHIVF---DGNDEEMVISNVSYVPDLNVNLLSVDALVKKGHEVIF 169          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A7N2RB38_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2RB38_QUELO)

HSP 1 Score: 61.6 bits (148), Expect = 5.370e-8
Identity = 44/127 (34.65%), Postives = 60/127 (47.24%), Query Frame = 1
Query:   13 NECLVTSVGVGREREEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFC-IAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFSLLDGVLNFTRDPGC 390
            N C+V+   V     EW++DSAASCHVT      T+YK   GN   V    +S+  I G GD+ +    R N    ++L++V HVPD+  NL S      +G    F    + L  G L   R   C
Sbjct:  150 NCCIVSDPYV-----EWVIDSAASCHVTPRNELFTSYK--AGNFGRVKMGNDSYADIVGIGDIYV----RANTRYTLILKDVRHVPDIRLNLISTHVLDKEGYGNYFRDGKWRLSKGSLVLARGKIC 265          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: UPI0007381C27 (uncharacterized protein LOC107046418 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007381C27)

HSP 1 Score: 60.5 bits (145), Expect = 1.020e-7
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   55 EEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFCIAGHGDLTILFPSRDNKE-VEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFS 348
            E+W LDSAAS H++       N +P    E+++         +  GD+ +L  + D +E V   +QN+ +VPD+ FNLFS +AA DKG   + T++  S
Sbjct:  235 EDWYLDSAASSHMSPRKEWFVNLEPLNFPEQIMIGDGKVIIRSARGDINVL--AYDGEEWVPKHIQNILYVPDIRFNLFSTEAATDKGLLHVATSTGAS 331          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A7N2RBS3_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2RBS3_QUELO)

HSP 1 Score: 58.5 bits (140), Expect = 6.140e-7
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   58 EWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFC-IAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFSLLDGVLNFTRDPGC 390
            EW++DSAASCHVT       +YK   GN   V    +S+  I G GD+ +    R N    ++L++V HVP++  NL S      +G    F    + L  G L F R+  C
Sbjct:   82 EWVIDSAASCHVTPRKELFISYKG--GNFGRVKIGNDSYVDIVGIGDICV----RANTGYTLILKDVRHVPNIRLNLISTHVLDKEGYDNYFHDGKWRLSKGSLVFAREKIC 187          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A2N9HS85_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HS85_FAGSY)

HSP 1 Score: 57.0 bits (136), Expect = 2.100e-6
Identity = 38/113 (33.63%), Postives = 53/113 (46.90%), Query Frame = 1
Query:   55 EEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFC-IAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFSLLDGVLNFTRDPGC 390
            +EW++DSAAS HVT      T+YK  VGN   V     S+  I G GD+ +      N    + L++V H+PD+  NL S      +G +       + L  G L F R   C
Sbjct:  115 DEWVIDSAASYHVTPRREFFTSYK--VGNVGRVKMGNKSYADIVGIGDICV----ETNTGYTLKLKDVRHIPDMHLNLISISVLDKEGYESHLGNGKWKLFKGSLVFARGKIC 221          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A2N9FA33_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FA33_FAGSY)

HSP 1 Score: 55.8 bits (133), Expect = 5.340e-6
Identity = 41/129 (31.78%), Postives = 57/129 (44.19%), Query Frame = 1
Query:    7 GANECLVTSVGVGREREEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFC-IAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFSLLDGVLNFTRDPGC 390
            G +EC      V    +EW++DSAAS HVT      T+YK   GN   V     S+  I G GD+ +      N    + L++V H+PD+  NL S      +G +       + L  G L F R   C
Sbjct:  225 GEDECC----HVADPYDEWVIDSAASYHVTPRREFFTSYK--TGNLGRVKMENKSYADIVGIGDICV----ETNTGYTLKLKDVRHIPDMRLNLISVSVLDKEGYESHLGNGKWKLFKGSLVFARGKIC 343          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A2N9IWX1_FAGSY (Uncharacterized protein n=7 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IWX1_FAGSY)

HSP 1 Score: 55.8 bits (133), Expect = 5.380e-6
Identity = 41/129 (31.78%), Postives = 57/129 (44.19%), Query Frame = 1
Query:    7 GANECLVTSVGVGREREEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFC-IAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFSLLDGVLNFTRDPGC 390
            G +EC      V    +EW++DSAAS HVT      T+YK   GN   V     S+  I G GD+ +      N    + L++V H+PD+  NL S      +G +       + L  G L F R   C
Sbjct:  257 GEDECC----HVADPYDEWVIDSAASYHVTPRREFFTSYK--AGNLGRVKMGNKSYADIVGIGDICV----ETNTGYTLKLKDVRHIPDMRLNLISVSVLDKEGYESHLGNGKWKLFKGSLVFARGKIC 375          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A2N9IAD6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IAD6_FAGSY)

HSP 1 Score: 55.5 bits (132), Expect = 7.180e-6
Identity = 41/129 (31.78%), Postives = 57/129 (44.19%), Query Frame = 1
Query:    7 GANECLVTSVGVGREREEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFC-IAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQAAADKGAKGIFTASSFSLLDGVLNFTRDPGC 390
            G +EC      V    +EW++DSAAS HVT      T+YK   GN   V     S+  I G GD+ +      N    + L++V H+PD+  NL S      +G +       + L  G L F R   C
Sbjct:  257 GEDECC----HVADPYDEWVIDSAASYHVTPRREFFTSYK--AGNLGRVKMGNKSYADIVGIGDICV----ETNTGYTLKLKDVRHIPDMCLNLISVSVLDKEGYESHLGNGKWKLFKGSLVFARGKIC 375          
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Match: A0A146HJ32_MYCCL (CCHC-type domain-containing protein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HJ32_MYCCL)

HSP 1 Score: 55.1 bits (131), Expect = 8.690e-6
Identity = 29/81 (35.80%), Postives = 43/81 (53.09%), Query Frame = 1
Query:   49 EREEWILDSAASCHVTNMITHMTNYKPCVGNERVVTASRNSFCIAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFS 291
            E E  +LDS A+ H+T     + NY   +    +  A +  F   G GDLT++ P+ + KEV++ + NV H P LG  L S
Sbjct:  409 EYEPVVLDSGATQHMTPNRDLLKNYS-AIKPRAITAADQGVFHAVGSGDLTVVIPNGEGKEVKVTIHNVLHAPKLGATLLS 488          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7098.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
UPI001F00A0483.990e-836.07DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6H5GIV9_9HEMI4.910e-834.95Integrase catalytic domain-containing protein (Fra... [more]
A0A7N2RB38_QUELO5.370e-834.65Uncharacterized protein n=1 Tax=Quercus lobata Tax... [more]
UPI0007381C271.020e-735.35uncharacterized protein LOC107046418 n=1 Tax=Diach... [more]
A0A7N2RBS3_QUELO6.140e-734.82Uncharacterized protein n=1 Tax=Quercus lobata Tax... [more]
A0A2N9HS85_FAGSY2.100e-633.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9FA33_FAGSY5.340e-631.78Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9IWX1_FAGSY5.380e-631.78Uncharacterized protein n=7 Tax=Fagus sylvatica Ta... [more]
A0A2N9IAD6_FAGSY7.180e-631.78Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A146HJ32_MYCCL8.690e-635.80CCHC-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7098contigC-tenellus_contig7098:2874..3373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5270.UM05424P0
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size501
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.28e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3V2N5@5204|Basidiomycota
DescriptionRetrotransposon gag protein
Cds size498
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790012.407636-CDS-C-tenellus_contig7098:2873..33711680790012.407636-CDS-C-tenellus_contig7098:2873..3371Choristocarpus tenellus KU2346CDSC-tenellus_contig7098 2874..3371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7098.2.1prot_C-tenellus_contig7098.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7098 2874..3371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7098.2.1

>prot_C-tenellus_contig7098.2.1 ID=prot_C-tenellus_contig7098.2.1|Name=mRNA_C-tenellus_contig7098.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=166bp
KCGANECLVTSVGVGREREEWILDSAASCHVTNMITHMTNYKPCVGNERV
VTASRNSFCIAGHGDLTILFPSRDNKEVEILLQNVAHVPDLGFNLFSCQA
AADKGAKGIFTASSFSLLDGVLNFTRDPGCHYTLHGQRILPRLNRNAELA
LKATIAPSLAPHAPHT
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mRNA from alignment at C-tenellus_contig7098:2874..3373+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7098.2.1 ID=mRNA_C-tenellus_contig7098.2.1|Name=mRNA_C-tenellus_contig7098.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=500bp|location=Sequence derived from alignment at C-tenellus_contig7098:2874..3373+ (Choristocarpus tenellus KU2346)
AAGTGTGGGGCAAACGAATGTTTGGTGACAAGTGTTGGGGTTGGCCGCGA GAGGGAAGAATGGATTTTGGACAGTGCGGCTTCATGTCATGTAACCAATA TGATAACTCACATGACTAATTACAAGCCTTGCGTTGGAAATGAAAGGGTA GTCACTGCCAGCAGAAATTCCTTTTGCATCGCTGGTCATGGTGATCTAAC CATCTTGTTTCCTTCACGTGACAACAAGGAGGTAGAAATACTCCTTCAGA ATGTCGCCCATGTCCCTGATCTAGGATTCAACCTTTTCTCTTGCCAAGCA GCAGCTGACAAGGGTGCAAAAGGCATTTTCACAGCCAGCTCATTCTCGCT ATTAGATGGAGTACTTAACTTCACAAGAGATCCTGGTTGCCACTACACCC TCCATGGTCAACGCATATTGCCGCGACTAAATCGAAATGCTGAACTTGCT TTAAAGGCCACTATAGCCCCCTCGCTTGCACCCCACGCTCCCCACACCAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7098:2874..3373+

>mRNA_C-tenellus_contig7098.2.1 ID=mRNA_C-tenellus_contig7098.2.1|Name=mRNA_C-tenellus_contig7098.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=498bp|location=Sequence derived from alignment at C-tenellus_contig7098:2874..3373+ (Choristocarpus tenellus KU2346)
AAGTGTGGGGCAAACGAATGTTTGGTGACAAGTGTTGGGGTTGGCCGCGA
GAGGGAAGAATGGATTTTGGACAGTGCGGCTTCATGTCATGTAACCAATA
TGATAACTCACATGACTAATTACAAGCCTTGCGTTGGAAATGAAAGGGTA
GTCACTGCCAGCAGAAATTCCTTTTGCATCGCTGGTCATGGTGATCTAAC
CATCTTGTTTCCTTCACGTGACAACAAGGAGGTAGAAATACTCCTTCAGA
ATGTCGCCCATGTCCCTGATCTAGGATTCAACCTTTTCTCTTGCCAAGCA
GCAGCTGACAAGGGTGCAAAAGGCATTTTCACAGCCAGCTCATTCTCGCT
ATTAGATGGAGTACTTAACTTCACAAGAGATCCTGGTTGCCACTACACCC
TCCATGGTCAACGCATATTGCCGCGACTAAATCGAAATGCTGAACTTGCT
TTAAAGGCCACTATAGCCCCCTCGCTTGCACCCCACGCTCCCCACACC
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