mRNA_C-tenellus_contig6758.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6758.2.1
Unique NamemRNA_C-tenellus_contig6758.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6758.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6758contigC-tenellus_contig6758:129..355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size210
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.0261812-CDS-C-tenellus_contig6758:128..2121680789990.0261812-CDS-C-tenellus_contig6758:128..212Choristocarpus tenellus KU2346CDSC-tenellus_contig6758 129..212 +
1680789990.035359-CDS-C-tenellus_contig6758:229..3011680789990.035359-CDS-C-tenellus_contig6758:229..301Choristocarpus tenellus KU2346CDSC-tenellus_contig6758 230..301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.0456457-UTR-C-tenellus_contig6758:301..3551680789990.0456457-UTR-C-tenellus_contig6758:301..355Choristocarpus tenellus KU2346UTRC-tenellus_contig6758 302..355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6758.2.1prot_C-tenellus_contig6758.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6758 129..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6758.2.1

>prot_C-tenellus_contig6758.2.1 ID=prot_C-tenellus_contig6758.2.1|Name=mRNA_C-tenellus_contig6758.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=52bp
MEDISSRLDRLEGFIRSSYFGYRKSPLVIFILNYFNLSLSPSVVCFSACP
Q*
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mRNA from alignment at C-tenellus_contig6758:129..355+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6758.2.1 ID=mRNA_C-tenellus_contig6758.2.1|Name=mRNA_C-tenellus_contig6758.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=227bp|location=Sequence derived from alignment at C-tenellus_contig6758:129..355+ (Choristocarpus tenellus KU2346)
ATGGAAGACATCAGTTCGAGACTGGACAGGTTGGAAGGCTTCATCAGGAG
CTCTTATTTCGGTTACAGAAAATCACCCCTTGTGACTGTCTTCCCTTGTT
TATTTTCATTCTGAATTATTTTAATTTAAGTTTGTCCCCATCAGTCGTGT
GTTTTAGTGCATGCCCACAGTAGTCAAGTGACAGCTTTGGTGTTGTATGC
AGACTGACTTTAGACAGAAGAGCTATT
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Coding sequence (CDS) from alignment at C-tenellus_contig6758:129..355+

>mRNA_C-tenellus_contig6758.2.1 ID=mRNA_C-tenellus_contig6758.2.1|Name=mRNA_C-tenellus_contig6758.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=156bp|location=Sequence derived from alignment at C-tenellus_contig6758:129..355+ (Choristocarpus tenellus KU2346)
ATGGAAGACATCAGTTCGAGACTGGACAGGTTGGAAGGCTTCATCAGGAG
CTCTTATTTCGGTTACAGAAAATCACCCCTTGTGATTTTCATTCTGAATT
ATTTTAATTTAAGTTTGTCCCCATCAGTCGTGTGTTTTAGTGCATGCCCA
CAGTAG
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