mRNA_C-tenellus_contig668.3.2 (mRNA) Choristocarpus tenellus KU2346
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Overview
Homology
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: D8LCZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ2_ECTSI) HSP 1 Score: 345 bits (886), Expect = 3.620e-105 Identity = 232/578 (40.14%), Postives = 318/578 (55.02%), Query Frame = 2
Query: 260 SDRSELFSGRAGEKRDEPRQSSRRQPA---PARKTRTTGSTLQSRGGTKMSVGVSAT--RREAQMKEAEQHQKAGNKYLQKTMTRWTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAKNYKEAAVIESRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDTTYDFVRVIGGTNVLSQAINFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKAEEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSIPGEE----EDIIPAPRNPASSVGDVQTRLDAIKGKYGVAPPPAPPHTSNKV---------------------------------PDCAPPGSMSVPGPSQAQYYPEVEPVVRTTQEGDDMATLKSGLFG-------PGTCTQSET--------------GNICGMGPEKPSALVPDEPA-GDSLGVVDLGLDDLELSLGAGGLRGVGHQDSDDLGAAIEAARREAEALDIGGE 1801
+D+ LF+GR G+K + + +++ PA S G + GV+AT RR+ Q+KEAE++ K NK L KT+TRW P++FSAAPLFEKA +CY AG+D A +MF+ A +C +SV A SAAK+++EAA+I R GR +E+A Y+ CA +W HA+E GRAA+Y G +AK ++ DED AAE ++ A+ VMVP+G D+ +F RV+G VL QAI FLAST +L++ MEV+ RY I+ EAEGM+ +L ++YL+ C+L L+ GD+VRAD AF VHLQ+TAYL S+EC+ EE+ L AFK+ L + Q DRTL RL T I+R+AK+L +PG+E EDIIPA P+ ++G Q R A+K KYG P PG + G S+ + E + + + + D + + LFG P T S G+ G K ++P+ A G VDLGL DLE SLG GG L A IEAARREAE L +GGE
Sbjct: 2 ADKKSLFAGRTGDKTAKLSSAPKKRSGNVMPAASGSGEEKAPPSFGKSGFGKGVAATQQRRDVQVKEAEEYLKQANKMLTKTLTRWNPDFFSAAPLFEKAGACYRAAGEDGKATAMFMQAGDCQCHDSVMAHASAAKDFREAALITERQGRREEAAAFYMRCAEAWMHADEPGRAAEYFGRSAKLVKDSDEDAAAERFVTASKVMVPNGSDSRSNFTRVVGSVEVLVQAIIFLASTNRLEQSMEVLSRYVIILEAEGMEHSLGRMYLTYCILALALGDYVRADMAFRNVHLQSTAYLRSEECRVEEELLIAFKDSRPDLLMEAQKDRTLHRLETAIVRIAKSLRVPGDEDDEDEDIIPARETPSGTIGAAQARAQALKEKYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAVASPSSGAPGPANSKGTSEQAWRTESDGAGKASPQASDEDSARGALFGGGPRKAKPSPPTASPAXXXXXXXXXXXXAAGSAWPSGAPKACPIIPETSADGPGDAEVDLGLGDLEASLGTGGXXXXXX-----LEAMIEAARREAEGLALGGE 574
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: A0A836CBL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL3_9STRA) HSP 1 Score: 208 bits (530), Expect = 8.790e-55 Identity = 121/315 (38.41%), Postives = 179/315 (56.83%), Query Frame = 2
Query: 446 AEQHQKAGNKYLQKTMTRWTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAKNYKEAAVIESRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDT-TYDFVRVIGGTNVLSQAINFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKA----------------------------------EEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSIPG 1285
A++ + A K + KT +WT ++F+AAPLFE+AA+ Y GQ+ A+ + A EC + + A+P AA++Y+EAA + D ++ E++ A SW + E G+A +YLG AA+ +EGIDED AAE Y AA M+P+G + T DF++++G L A+ FL +L + + V+ RY I E+E TL +L+L+ V++L+ GD+V AD A+ + HLQ++ YL + ECK EED LTAFKNYDA L + Q R LLRL P +RLA+AL+I G
Sbjct: 79 ADEARAAAAKLITKTWKQWTCDFFAAAPLFERAAAAYRACGQEEAALMAYAQAGECQDENA--AWPLAARDYREAAQLALTCRADAKAVEMFKAAATSWMNGAEPGKAGEYLGKAAQVLEGIDEDRAAEEYKAAADAMIPEGVNPYTTDFIKIVGARETLDAALRFLLGARRLDDALHVLRRYCIFLESERATHTLHRLFLTEAVVLLARGDYVAADAAYRDAHLQDSEYLRAPECKVRHWRKLAAFEVGVVXXXXXXXXXXXXXXXXXXXXEEDLLTAFKNYDADLLAETQRSRALLRLDAPAVRLAQALTIDG 391
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: W7TN30_9STRA (Soluble nsf attachment protein gamma isoform n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN30_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.480e-25 Identity = 86/282 (30.50%), Postives = 147/282 (52.13%), Query Frame = 2
Query: 437 MKEAEQHQKAGNKYLQKTMT-RWTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAKNYKEAAVIESRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDTTYDFVRVIGGTNVLSQAINFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKAEEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSI 1279
+KEAEQ + K L+ ++ W P+Y SAAP F+KAAS Y AG + A + ++ +AEC+E S + +AA Y+ AA I ++ + EL A+ W + GRAAD L A +E A + L+ + + PD ++ D ++VLS+++N ++ +++ + + A+G+ +L ++Y ++ VL L GD V AD F EVHLQ++ Y+ S EC+ E+ L+A K AL+ + L +++ A+ L++
Sbjct: 75 LKEAEQWRVKAVKTLKTSLFGNWQPDYLSAAPYFDKAASLYKAAGAEEQAKAAYMKSAECNE--KTSTYAAAAMAYRNAAQIAKVEEEEEAAGELLAREADMWVLQGDVGRAADSLVKAGVQVEDACPKQAVAYCLQGVSWLAPDQGESV-DLRSAPLASDVLSRSLNLCLRNEQVHPALDISDKAGRVLRAQGLTSSLYKMYCTTTVLQLYIGDVVAADKTFLEVHLQDSGYIRSVECECAENLLSAAKGLSRTALEGAVHALSRAYLDNSVLKFARRLTV 353
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: A0A4D9D395_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D395_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.670e-25 Identity = 87/282 (30.85%), Postives = 147/282 (52.13%), Query Frame = 2
Query: 437 MKEAEQHQKAGNKYLQKTMT-RWTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAKNYKEAAVIESRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDTTYDFVRVIGGTNVLSQAINFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKAEEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSI 1279
+KEAEQ + K L+ ++ W P+Y SAAP F+KAAS Y AG + A + +V +AEC+E S + +AA Y+ AA I ++ + EL A+ W + GRAAD L A +E A + L+ +++ P G + D ++VLS+++N ++ +++ + + A+G+ +L ++Y ++ VL L GD V AD F EVHLQ++ Y+ S EC+ E+ L+A K AL+ + L +++ A+ L++
Sbjct: 75 LKEAEQWRVKAVKTLKTSLFGNWQPDYLSAAPYFDKAASLYKAAGAEEQAKAAYVKSAECNE--KTSTYAAAAMAYRNAAQIAKVEEEEEAAGELLAREADMWVLQGDVGRAADSLIKAGVQVEDACPKQAVAYCLQGVSLLAP-GQRESVDLRSAPLASDVLSRSLNLCLRNEQVHPALDISDKAGRVLRAQGLTSSLYKMYCTTTVLQLYIGDVVAADKTFMEVHLQDSGYIRSVECECAENLLSAAKGMSRTALEGAVHALSRAYLDNSVLKFARRLTV 353
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: C5K4E3_PERM5 (Gamma-soluble NSF attachment protein, putative n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K4E3_PERM5) HSP 1 Score: 78.6 bits (192), Expect = 5.020e-12 Identity = 85/317 (26.81%), Postives = 148/317 (46.69%), Query Frame = 2
Query: 437 MKEAEQHQKAGNKYLQKTMTR--WTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAKNYKEAAVIESRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDTTYDFVRVIGGTNVLSQAI----NFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKAEEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSIPGEEEDIIPAP-RNPASSVGDVQTRLDAIK 1366
++EA H K + L ++ R ++P+Y AA +AA+C+ A + A ++ AAE + + F AA+N++ A G+ + E Y A+S+ A + +AA A + D + A + Y K + DG D + GG +A+ ++L S +L++ +E L EA G+ + + L+ V++LSTGD VRAD + L +L S+E A E + A++N DA AL+ + + L I+++AK+L + +P+P R+P + G DA +
Sbjct: 4 VEEARDHVKKAQEALHPSIWRLQFSPDYLVAALELSQAAACFQSASLNDQAAKAWLKAAELRKTN-LRDFQGAARNFESA-------GQLVHNPEHYKSAADSYLAAGKADQAARAWTKVAGILAKTDPEGATDAYRKVVDIYRADG-DVKH------GGNAYALEALRVYQDWLLSRHELEKWLEASKESSTLLEAAGLYASTHKELLARVVVLLSTGDSVRADEVLASC-LNVNGFLASEEMAAGEGMVIAYRNNDAEALQDAVNKNCVKFLPIEIVKIAKSLKVAE-----LPSPSRSPGGNPGPENDATDAAE 299
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: A0A668A007_9TELE (Gamma-soluble NSF attachment protein-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668A007_9TELE) HSP 1 Score: 59.7 bits (143), Expect = 8.520e-6 Identity = 72/283 (25.44%), Postives = 121/283 (42.76%), Query Frame = 2
Query: 443 EAEQHQKAGNKYLQKTMTRWTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAKNYKEAAVIE--SRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDTTYDFVRVIGGTNVLSQAINFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKAEEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSIPG 1285
EA +H K L+ ++T+W P+Y SAA + KAA C+ A Q A ++ AE H E+ + F AAK ++A ++ SR + E+ + + AA L A K +E I+ D A + Y KAA V + R+ +L +A L +L E + + + + + P + + ++ L GD+V AD E + Y S++ A E L + D + +V + L + +LA +L +PG
Sbjct: 8 EAHEHITKAEKCLKTSLTKWKPDYDSAASEYAKAAVCFKNAKQFDQAKDAYLKEAEYHT-ENKALFH-AAKAIEQAGMMMKVSRTPKMPEAIQYIEKACMMYMENGTPDTAAMALDRAGKLIEPINLDKAVDLYQKAAGVFENED--------RLRQAAELLGKASRLLVRLKRLDEAAVALQKEKNMYKEIENFPMCFKKTTAQVLIHLHRGDYVAADKCVRESY-SLPGYSGSEDSVAMETLLQGYDEQDEDQVYRVCNSPLLKYMDNDYAKLAISLRVPG 279
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: UPI001C09C627 (N-ethylmaleimide-sensitive factor attachment protein, gamma b isoform X1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C09C627) HSP 1 Score: 57.4 bits (137), Expect = 4.790e-5 Identity = 70/281 (24.91%), Postives = 111/281 (39.50%), Query Frame = 2
Query: 443 EAEQHQKAGNKYLQKTMTRWTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAKNYKEAAVIESRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDTTYDFVRVIGGTNVLSQAINFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKAEEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSIPG 1285
EA +H K L+ +MT+W P++ SAA + KAA + A Q A ++ AE H E+ + F AAK G A L A K ME +D + A + Y KAA V + R+ +L +A L KL + + + + + + PT + + ++ L GDFV AD E + Y +S++C A E L + D + +V + L + +LA +L +PG
Sbjct: 8 EAHEHIAKAEKCLKTSMTKWKPDFDSAATEYSKAAVAFKHAKQFDQAKEAYLKEAEYHT-ENKALFH-AAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVENGTAGTAGIALDRAGKLMEPMDLEKAVDLYQKAAYVFETED--------RLTQAAEMLGKASRLLVRLRKLDDAAASLQKEKTMYKDLENYPTCFKKTTAQVLIHLHRGDFVAADKCVRESY-SFPGYNNSEDCVAMETLLQGYDEQDEDQVHRVCNSPLLKYMDNDYAKLAISLRVPG 277
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Match: A0A3B3S6N1_9TELE (NSF attachment protein gamma n=4 Tax=Teleostei TaxID=32443 RepID=A0A3B3S6N1_9TELE) HSP 1 Score: 56.6 bits (135), Expect = 8.560e-5 Identity = 66/286 (23.08%), Postives = 117/286 (40.91%), Query Frame = 2
Query: 443 EAEQHQKAGNKYLQKTMTRWTPNYFSAAPLFEKAASCYHGAGQDSMAVSMFVTAAECHEAESVSAFPSAAK-----NYKEAAVIESRAGRDKESAELYILCANSWHHANEGGRAADYLGCAAKAMEGIDEDVAAEHYLKAAAVMVPDGCDTTYDFVRVIGGTNVLSQAINFLASTGKLKECMEVVGRYEILAEAEGMDPTLAQLYLSSCVLILSTGDFVRADGAFSEVHLQNTAYLHSKECKAEEDFLTAFKNYDALALKKVQDDRTLLRLSTPIIRLAKALSIPG 1285
EA +H K L+ ++T+W P+Y SAA + KAA + A Q A +V AE H F + + + A+I+ + R E+ + + + AA L A K +E ++ + A + Y KAA+V + R+ +L ++ L +L E + + + + + PT + ++ ++ L DFV AD E + + S++C A E L + D + +V L + +LA L +PG
Sbjct: 8 EAHEHIAKAEKCLKTSLTKWKPDYDSAASEYSKAAVAFKNAKQFEQAKDAYVKEAEYHTENKAFFFRALEQAGMMMKVSKMALIDMK--RMPEAIQYIEKASMMYVENGTPDTAAMALDRAGKLIEPVNVEKAIDLYKKAASVFENED--------RLRQAAELLGKSSRLLVRLRRLDEAAASIHKEKNMYKEIENYPTCFKKTIAQVLVHLHRNDFVAADKCVRESY-SIPGFSGSEDCVAMEQLLQGYDEQDEDVVNRVCSSPLLKYMDNDYAKLAVTLKVPG 282 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig668.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig668.3.2 >prot_C-tenellus_contig668.3.2 ID=prot_C-tenellus_contig668.3.2|Name=mRNA_C-tenellus_contig668.3.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=545bp MSSDRSELFSGRAGEKRDEPRQSSRRQPAPARKTRTTGSTLQSRGGTKMSback to top mRNA from alignment at C-tenellus_contig668:4418..10281+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig668.3.2 ID=mRNA_C-tenellus_contig668.3.2|Name=mRNA_C-tenellus_contig668.3.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5864bp|location=Sequence derived from alignment at C-tenellus_contig668:4418..10281+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig668:4418..10281+ >mRNA_C-tenellus_contig668.3.2 ID=mRNA_C-tenellus_contig668.3.2|Name=mRNA_C-tenellus_contig668.3.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1635bp|location=Sequence derived from alignment at C-tenellus_contig668:4418..10281+ (Choristocarpus tenellus KU2346)back to top |