mRNA_C-tenellus_contig11654.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11654.1.1
Unique NamemRNA_C-tenellus_contig11654.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A6H5KYV8_9PHAE (Dynamin-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYV8_9PHAE)

HSP 1 Score: 392 bits (1007), Expect = 1.210e-131
Identity = 196/220 (89.09%), Postives = 212/220 (96.36%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERAA 660
            RADLIV+MFDAHKLDISDEL+MVIDT++PHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPL NF+NR LLE+EK+DLL+EL+LLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPY+MGKQEKQ +L IRRLDQEFLACARRY LPLGDFPKV+KFRRSLREIKDIS+F  LDKSLV+EM+KVFS DIPKLME+AA
Sbjct:  372 RADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKL-IRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDISKFKSLDKSLVHEMDKVFSGDIPKLMEKAA 590
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A835ZF39_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF39_9STRA)

HSP 1 Score: 364 bits (934), Expect = 8.220e-123
Identity = 184/219 (84.02%), Postives = 203/219 (92.69%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERA 657
            RADLIVVMFDAHKLDISDEL+MVIDT++PHHDK+RVLLNKAD IDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFW+APL N EN LLLEREK DL++EL+ LP+NAVVRRINELVKRARSVKVHAYIIHYLRKQMPY+  K+EKQA L I RLDQEF+ACARRYSLPLGDFP V KF+R LREI+DIS+FSKLDKSLV EM+KVF+ +IP+LMERA
Sbjct:  202 RADLIVVMFDAHKLDISDELKMVIDTLKPHHDKVRVLLNKADAIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWDAPLANLENALLLEREKRDLIEELMGLPDNAVVRRINELVKRARSVKVHAYIIHYLRKQMPYLYKKEEKQAEL-IARLDQEFVACARRYSLPLGDFPNVGKFKRKLREIRDISKFSKLDKSLVAEMDKVFTHEIPRLMERA 419
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A4D9D5E5_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5E5_9STRA)

HSP 1 Score: 324 bits (831), Expect = 6.140e-106
Identity = 161/224 (71.88%), Postives = 194/224 (86.61%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERAASSPR 672
            RADLI++MFDAHKLDISDELR+V+D +R H DK+R+LLNKAD ID+QQLMR+YGALMWSLGKV+ TPEVCRVYIGSFWE PL + +NR LLE+EK DLL EL  LP+NAVVRRINELVKRARSVKVHAY+IHYLRKQ+P V GK EKQA+LL + L +EF+ACARRY LPLGDFP ++KFR  L E+KD+ +F KLDK++V EM++VFS DIPKL+E+A+  P+
Sbjct:  290 RADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLL-QTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLRKFPKLDKAMVQEMDRVFSHDIPKLVEKASRQPQ 512
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: B8BZ45_THAPS (Probable eh domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ45_THAPS)

HSP 1 Score: 314 bits (805), Expect = 6.080e-104
Identity = 158/219 (72.15%), Postives = 184/219 (84.02%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERA 657
            RADLI+VMFDAHKLDISDEL+ VI+ ++PH DKMRVLLNKAD+I TQQLMRVYGALMWSLGKVM TPEVCRVY+GSFW APL N E   LL +EK DL  ++  LP+NAV+RRINELVKRAR+VKVHAYIIHYLRKQ+PY  GK+EKQ RL I RLD+EF+ CARRY LP GDFP+++ FR++L EIKD+S   KLDK +V EM+KVFS DIP L+E A
Sbjct:  162 RADLIIVMFDAHKLDISDELKRVIELLKPHQDKMRVLLNKADSISTQQLMRVYGALMWSLGKVMMTPEVCRVYMGSFWGAPLKNKEQSALLTQEKLDLFNDIAQLPQNAVMRRINELVKRARAVKVHAYIIHYLRKQLPYTWGKREKQRRL-IDRLDREFVMCARRYELPRGDFPELEPFRQALLEIKDLSEIHKLDKKMVKEMDKVFSVDIPNLLEAA 379
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A7S1XLP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLP5_9STRA)

HSP 1 Score: 313 bits (803), Expect = 2.860e-103
Identity = 158/219 (72.15%), Postives = 188/219 (85.84%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERA 657
            RADLI+VMFDAHKLD+SDELR V+ T+RP  DKMR+LLNKAD+ID QQLMRVYGALMWSLGKV+ TPEVCRVY GSFW+ PL N EN  LL +EK  LL EL  L + AV+RRINELVKRAR+VKVHA+IIHYLRKQMPY++GK +KQ +L I RLD+EF+ACARRY L LGDFP V+K++++L EIKDIS+F +LDKSLV EM++VFS DIPKL++RA
Sbjct:  182 RADLIIVMFDAHKLDVSDELRNVLQTLRPQQDKMRILLNKADSIDGQQLMRVYGALMWSLGKVLGTPEVCRVYTGSFWDGPLRNQENAKLLIKEKESLLAELSELSDRAVLRRINELVKRARAVKVHAFIIHYLRKQMPYLIGKGDKQMKL-INRLDREFVACARRYGLALGDFPPVEKYQQALMEIKDISKFPRLDKSLVAEMDRVFSHDIPKLLDRA 399
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A7S2FIM4_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FIM4_9STRA)

HSP 1 Score: 313 bits (802), Expect = 6.060e-103
Identity = 157/227 (69.16%), Postives = 189/227 (83.26%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERAA--SSPRD 675
            RAD I+V+FDAHKLDISDELR V++T+RPH DK++VLLNKAD +++QQLMRVYGALMW LGKV+ TPEVCRVY+GSFW+ PL N EN  LL REK DL+ EL  LP NA +RRINELVKR RSVKVHAYIIHYLRKQMPY  GK+EKQ RL I RL+ EF+ CARRY+LPLGDFP +D+FR +L +IKDIS+F KLDKSLV EM++V + DI KL+E+ +  ++P D
Sbjct:  194 RADCIIVLFDAHKLDISDELRNVLNTLRPHQDKVKVLLNKADQVNSQQLMRVYGALMWQLGKVLNTPEVCRVYVGSFWDQPLVNTENAALLAREKEDLMNELSDLPRNAALRRINELVKRTRSVKVHAYIIHYLRKQMPYTFGKKEKQQRL-IGRLENEFVQCARRYNLPLGDFPNLDEFRTNLLQIKDISKFQKLDKSLVKEMDRVLANDIAKLLEKCSIQTAPMD 419
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A7S4J6K8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6K8_9STRA)

HSP 1 Score: 312 bits (799), Expect = 6.720e-102
Identity = 154/221 (69.68%), Postives = 187/221 (84.62%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERAAS 663
            R+DLIV+MFDAHKLDISDEL+ VI+ ++PH DK+RV+LNKAD + TQ LMRVYGALMW+LGKVM TPEVCRVY+GSFW +PL N E   LLEREK DL +++  LP+NAV+RRINELVKRAR+VKVHAYIIHYLRKQ+PY  GK+EKQ RL I RL++EF+ CARRY LP GDFP ++ FR++L EIKD+S F KLDK +V EM+KVFS DIP+L+E+A S
Sbjct:  247 RSDLIVIMFDAHKLDISDELKRVIEIMKPHADKVRVVLNKADGVSTQHLMRVYGALMWNLGKVMMTPEVCRVYMGSFWASPLQNAEQASLLEREKMDLFRDIAELPQNAVMRRINELVKRARAVKVHAYIIHYLRKQLPYTWGKREKQRRL-IDRLEREFVMCARRYELPRGDFPPIEPFRQALLEIKDLSEFPKLDKKMVKEMDKVFSVDIPELLEKARS 466
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A7S2R5Z4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5Z4_9STRA)

HSP 1 Score: 310 bits (795), Expect = 7.370e-102
Identity = 156/220 (70.91%), Postives = 181/220 (82.27%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERAA 660
            RAD+I+V+FDAHKLDISDEL+  +D +RPH DK+RVLLNKAD +  QQLMRVYGALMW LGKV+ TPEVCRVY+GSFW+ P+   EN  LL REK DLL EL  LP NA +RRINELVKR RSVKVHAYIIHYLRKQMPY  GK+EKQ RL I RLD+EF+ CARRY LP GDFP ++KFR +L EIKDIS+F KLDKS+VYEM++V S DI KL+E+ A
Sbjct:  190 RADMILVLFDAHKLDISDELKSALDVLRPHQDKVRVLLNKADMVTPQQLMRVYGALMWQLGKVLNTPEVCRVYLGSFWDQPMQVNENHALLVREKEDLLGELGGLPRNAALRRINELVKRTRSVKVHAYIIHYLRKQMPYTFGKKEKQERL-IARLDREFVNCARRYGLPRGDFPDLNKFRNALMEIKDISKFPKLDKSMVYEMDRVLSNDIAKLLEQCA 408
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A7S1YN01_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YN01_9STRA)

HSP 1 Score: 313 bits (801), Expect = 8.330e-102
Identity = 155/219 (70.78%), Postives = 188/219 (85.84%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERA 657
            R+DLI+VMFDAHKLDISDEL+ V++++ PH DK+RV+LNKADT+ TQQLMRVYGALMWSLGKVM TPEVCRVY+GSFW+APL N E   LL+RE+ DLLQ+++ LP+ AV+R+INE+VKRARSVKVHAYIIHYLRKQ+PY  GK+EKQ RL I RL+ EFLA ARRY LP GDFP ++ FR +L EIKD+S F KLDK LV EM+K+FS DIP+L+E+A
Sbjct:  278 RSDLIIVMFDAHKLDISDELKRVMESMIPHLDKIRVVLNKADTVSTQQLMRVYGALMWSLGKVMNTPEVCRVYMGSFWDAPLQNLEQAELLQREEMDLLQDVMRLPQQAVMRKINEMVKRARSVKVHAYIIHYLRKQLPYTWGKREKQKRL-IGRLESEFLAAARRYGLPKGDFPSLEPFRTALYEIKDLSEFPKLDKKLVREMDKLFSVDIPELLEKA 495
[Close]
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Match: A0A7S4R6J9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R6J9_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.430e-101
Identity = 157/219 (71.69%), Postives = 184/219 (84.02%), Query Frame = 1 
Query:    1 RADLIVVMFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLDQEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKVFSADIPKLMERA 657
            RADLI++MFDAHKLDISDEL+ VI+ ++PH DK+RVLLNKAD + TQ LMRVYGALMW+LGKVM TPEVCRVY+GSFW APL N E   LLE+EK DL  ++  LP+NAV+RRINELVKRAR VKVHAYIIHYLRKQ+PY  GK+EKQ RL I RLD+EFL CARRY LP GDFP ++ FR++L EIKD+S F KLDK +V EM+KVFS DIP+L+ERA
Sbjct:  384 RADLIIIMFDAHKLDISDELKRVIEMMKPHSDKVRVLLNKADAVSTQHLMRVYGALMWNLGKVMMTPEVCRVYMGSFWGAPLQNTEQASLLEQEKFDLFTDISQLPQNAVMRRINELVKRARGVKVHAYIIHYLRKQLPYTWGKREKQRRL-IDRLDREFLMCARRYELPRGDFPPLEPFRQALLEIKDLSEFPKLDKKMVREMDKVFSVDIPELLERA 601
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11654.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYV8_9PHAE1.210e-13189.09Dynamin-type G domain-containing protein n=2 Tax=E... [more]
A0A835ZF39_9STRA8.220e-12384.02P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4D9D5E5_9STRA6.140e-10671.88Dynamin-type G domain-containing protein n=1 Tax=N... [more]
B8BZ45_THAPS6.080e-10472.15Probable eh domain-containing protein (Fragment) n... [more]
A0A7S1XLP5_9STRA2.860e-10372.15Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FIM4_9STRA6.060e-10369.16Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S4J6K8_9STRA6.720e-10269.68Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2R5Z4_9STRA7.370e-10270.91Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S1YN01_9STRA8.330e-10270.78Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4R6J9_9STRA1.430e-10171.69Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11654contigC-tenellus_contig11654:1979..4717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPK6
Preferred nameEHD4
PFAMsDynamin_N,EF-hand_4,EHD_N
Model size690
Max annot lvl2759|Eukaryota
KEGG koko:K12469,ko:K12476,ko:K12477,ko:K12483
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001881,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003002,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005901,GO:0005929,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006907,GO:0006937,GO:0006942,GO:0006950,GO:0006996,GO:0007009,GO:0007010,GO:0007034,GO:0007041,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007349,GO:0007389,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0007596,GO:0007599,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008587,GO:0009611,GO:0009653,GO:0009719,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010008,GO:0010033,GO:0010256,GO:0010562,GO:0010604,GO:0010720,GO:0010830,GO:0010831,GO:0010883,GO:0010884,GO:0010885,GO:0010886,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0010959,GO:0010975,GO:0010976,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017016,GO:0017111,GO:0017137,GO:0019220,GO:0019222,GO:0019898,GO:0019899,GO:0019904,GO:0019953,GO:0020016,GO:0020018,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022898,GO:0023051,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030100,GO:0030139,GO:0030154,GO:0030182,GO:0030424,GO:0030865,GO:0030866,GO:0031090,GO:0031094,GO:0031095,GO:0031175,GO:0031253,GO:0031267,GO:0031323,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031410,GO:0031901,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033267,GO:0033365,GO:0034381,GO:0034383,GO:0034498,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042060,GO:0042147,GO:0042221,GO:0042325,GO:0042327,GO:0042391,GO:0042592,GO:0042632,GO:0042670,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043010,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043270,GO:0043679,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044260,GO:0044306,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044441,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0044853,GO:0045121,GO:0045171,GO:0045184,GO:0045202,GO:0045466,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045937,GO:0046530,GO:0046907,GO:0048052,GO:0048193,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048563,GO:0048569,GO:0048592,GO:0048593,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0048878,GO:0050730,GO:0050731,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051924,GO:0051928,GO:0051960,GO:0051962,GO:0055037,GO:0055038,GO:0055088,GO:0055092,GO:0055117,GO:0060041,GO:0060042,GO:0060142,GO:0060143,GO:0060170,GO:0060219,GO:0060255,GO:0060271,GO:0060284,GO:0060341,GO:0060429,GO:0060562,GO:0060627,GO:0060988,GO:0060990,GO:0061024,GO:0061174,GO:0061512,GO:0065003,GO:0065005,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0071212,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071825,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0086036,GO:0090160,GO:0090257,GO:0090596,GO:0097006,GO:0097159,GO:0097320,GO:0097458,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098793,GO:0098805,GO:0098857,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0150034,GO:1901019,GO:1901021,GO:1901363,GO:1901385,GO:1901387,GO:1901739,GO:1901741,GO:1903169,GO:1903358,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1904950,GO:1905952,GO:1905954,GO:1990089,GO:1990090,GO:1990255,GO:1990778,GO:2000026,GO:2001135,GO:2001137,GO:2001257,GO:2001259
Exons5
Evalue8.16e-130
EggNOG OGsKOG1954@1|root,KOG1954@2759|Eukaryota
Descriptionendocytic recycling
Cds size669
COG categoryS
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11654.1.1prot_C-tenellus_contig11654.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11654 1979..4696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.4789977-CDS-C-tenellus_contig11654:1978..20861680789188.4789977-CDS-C-tenellus_contig11654:1978..2086Choristocarpus tenellus KU2346CDSC-tenellus_contig11654 1979..2086 -
1680789188.4904647-CDS-C-tenellus_contig11654:2727..28561680789188.4904647-CDS-C-tenellus_contig11654:2727..2856Choristocarpus tenellus KU2346CDSC-tenellus_contig11654 2728..2856 -
1680789188.5030918-CDS-C-tenellus_contig11654:3203..33801680789188.5030918-CDS-C-tenellus_contig11654:3203..3380Choristocarpus tenellus KU2346CDSC-tenellus_contig11654 3204..3380 -
1680789188.512601-CDS-C-tenellus_contig11654:3855..40271680789188.512601-CDS-C-tenellus_contig11654:3855..4027Choristocarpus tenellus KU2346CDSC-tenellus_contig11654 3856..4027 -
1680789188.5237525-CDS-C-tenellus_contig11654:4613..46961680789188.5237525-CDS-C-tenellus_contig11654:4613..4696Choristocarpus tenellus KU2346CDSC-tenellus_contig11654 4614..4696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.5353613-UTR-C-tenellus_contig11654:4696..47171680789188.5353613-UTR-C-tenellus_contig11654:4696..4717Choristocarpus tenellus KU2346UTRC-tenellus_contig11654 4697..4717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11654.1.1

>prot_C-tenellus_contig11654.1.1 ID=prot_C-tenellus_contig11654.1.1|Name=mRNA_C-tenellus_contig11654.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=223bp
MFDAHKLDISDELRMVIDTIRPHHDKMRVLLNKADTIDTQQLMRVYGALM
WSLGKVMQTPEVCRVYIGSFWEAPLHNFENRLLLEREKHDLLQELLLLPE
NAVVRRINELVKRARSVKVHAYIIHYLRKQMPYVMGKQEKQARLLIRRLD
QEFLACARRYSLPLGDFPKVDKFRRSLREIKDISRFSKLDKSLVYEMEKV
FSADIPKLMERAASSPRDMRGG*
back to top

mRNA from alignment at C-tenellus_contig11654:1979..4717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11654.1.1 ID=mRNA_C-tenellus_contig11654.1.1|Name=mRNA_C-tenellus_contig11654.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2739bp|location=Sequence derived from alignment at C-tenellus_contig11654:1979..4717- (Choristocarpus tenellus KU2346)
AGGGCAGATCTGATAGTGGTCATGTTTGATGCCCACAAGCTGGACATATC
AGATGAGCTGAGGATGGTGATTGACACTATCAGGCCACACCATGACAAGA
TGAGGTAACAGGGTTTGGGTATTGTGATGTGGAGGGGGAGGGGATGAGAT
ACGCCAGACATGCAGATATATATATATATATATACCATCTTATACTGGGC
CAGACAGTGGCACTACTCTCTGTGCCAATGAAAGTCCTGTGATACTTGAA
TGTTTGACAAGAGACAGGGAGACAAGGGCAGGCAGGGGACAGAGATGCAA
GGGCTGTGGTAGGAGACTGGGTTCTTCAGAGTAGGAGTGAGCCTGCTTGA
TATACAAGTTTTTCTCCTCTCCCTTGTGCTTTCTGGGAAAGGTATTTTAA
AAGGTTCTCTTGTCAATGTTTTTACTTGTTTCTTCTTTTAAGGCTTGGAG
GTAAGAGTTGAAGAAAAAAGCTGTTGCAAAGTGTTGCTTGTTTTAGTATA
TGGGTTCTGTCTCTACATGTATTTCTTTTTCCTGACATCTCCAGTCCTGT
TTGTGGCACTTCTCTTCCCCTCCCCCCCCCCCACCCCCCCCACCCCCCCA
CACACACAATGCAAGCTTGTTTCCTTTCACGTTTGAAATGAGTGCTGGTG
TGGTCACTGTCCTTATCCGACTGTATTATTATTGTTTCAGGGTTTTGCTG
AACAAGGCAGATACAATTGACACTCAACAGCTCATGCGGGTGTACGGGGC
ATTGATGTGGTCCCTGGGCAAGGTGATGCAAACCCCTGAGGTGTGCCGTG
TGTATATAGGGTCATTCTGGGAGGCCCCTCTTCACAATTTCGAGAATCGG
TTACTTTTGGAGGTGAGAAAGAAGCAAAAGGTTAATAGTTGTGGGAACAG
GGTTGACAGTGCTCTATGTGTTTGTAGAGTAAAATGTTTGGGCAGATTGG
AATTTCCTTGTGATAAATGTTGTCTCTTTTTTGATCAAGTGGGTGTATTT
TGAGGGAAGGAAGAGAGATGGGCTAAATGTATATTGCACAGGCAAGCACT
TGGTGCAGGTGTTCGTAATGAAACCCCTACAATTATTGCTCACATAGTTC
GGTATTAGATGCCTGGCTCCAGTTTAGACCTTGGGGCCATGGGGCTAGAT
CTTCTCCCTTTTCCCTTACCCAAGTTGACAAGAAATCACGTCAGGTCTAT
TGCACCTTGCCTTCTTTCTTGCCCATGCCCTTCATTCCCCACCCAGTGCT
ACCTTTGTGATTGTGTTGGCTCTGCTGTGCTTGCTGCTCCACCCTTCCCT
CCTCCCTCCAATGACTTTTTTTTATGCCTTTTATCAGAGAGAGAAGCACG
ATCTTTTGCAGGAGCTGCTGCTATTGCCGGAGAATGCGGTGGTTCGTCGT
ATCAATGAGCTCGTCAAGAGAGCCAGGAGTGTTAAGGTTCATGCATACAT
CATCCACTACCTGCGGAAGCAGATGCCATATGTCATGGGCAAGCAGGAGA
AGCAGGCACGGCTTGTCGGGTACTGTCTGTGAAGGGGTGGTGCTCGAGGG
CACTCAGTAGGACTCTTGAGGGGCATGGGTCCTACTTGTGTAGAGTTTGT
ATGTAAGGTGATGTGAGTACCTACCTGATGGGATGAATTTTCGTGAAATT
ATCTCAGAGCCCTGGTAGTTTTGGGGGTGTTTTTTGCATTTCCCTAACCC
TAAATAGTTTGTTTTTTTCCCCTCCATTCAGAAACAACTAGCCTCAGATC
ATGTCGTTCTTCCTAGTCTCTACTGCAGTTTGGGTACACCCTGTGCTACC
CTGAGCCAGACCATGCCTACAAAATTATAACTCCGAACAAATCAACCACA
CTCAGGACAAGCTGATTCGCCGACTAGACCAAGAGTTCCTGGCATGTGCA
AGGCGGTACAGTCTTCCTTTGGGGGACTTCCCCAAGGTGGATAAGTTCCG
ACGATCTTTGAGGGAGATCAAGGACATCAGCAGATTCTCGGTGAGTTGTC
CTGCCTTGATGTTTGTTGCTGTCCTCCCCTGTTGCTGTGCTTGCACTAGT
TTTTTTAACATCGTTCTGTACGTTACACTGCTCTCCTGCCTTCTTACGGA
ATTTTCACTCTGAAGTTCCAAGAACTTCACATAATTTTTAGTACACTAGT
AGCCTGCCTCTACATTGACACCATGCTTCGTGAAGCCATACGTGGATATT
TTCCCCCCTTTGAACTTCAGAGTGAAAATACCACTAGTAGCTGTGTGACT
GTCCACCATCGGGGGTGTATGGACAATGACAAGTGCCTGAACTACCTTCG
TATTTGCCTACATGAGAATGCTCCTTACAGTAGAATTGTTTTGGGACTGT
ACCCCCAAGGTATGGGATGGGATATTTTCTGGTAGTCAATGATGGTATAA
ACAAGCTTTGTTCTCGGCTTAATGGAGGGATTGTATGTTTGGTGAATCTA
ACTTTATTAGTTGATCGAGAGCTTTATGTCGTCAACAACCAAAAGTGCGC
ATCGTGTCTCCCCTTCCCCCTCCCTGTCAAGCACTAGGCATAGAGTCGAG
ACTTTGTCTTGTGTTTCTTGCTGGCAAGGTGTTGAAGGTTGTTCCCTGTC
TATCCCCTCTCCCTTGGATCCCGTTTCTCAGAAGTTGGACAAGAGCCTGG
TATATGAGATGGAAAAGGTCTTCTCTGCCGACATACCCAAGCTCATGGAG
AGGGCAGCTTCATCCCCAAGAGACATGAGGGGAGGATAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11654:1979..4717-

>mRNA_C-tenellus_contig11654.1.1 ID=mRNA_C-tenellus_contig11654.1.1|Name=mRNA_C-tenellus_contig11654.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=669bp|location=Sequence derived from alignment at C-tenellus_contig11654:1979..4717- (Choristocarpus tenellus KU2346)
ATGTTTGATGCCCACAAGCTGGACATATCAGATGAGCTGAGGATGGTGAT
TGACACTATCAGGCCACACCATGACAAGATGAGGGTTTTGCTGAACAAGG
CAGATACAATTGACACTCAACAGCTCATGCGGGTGTACGGGGCATTGATG
TGGTCCCTGGGCAAGGTGATGCAAACCCCTGAGGTGTGCCGTGTGTATAT
AGGGTCATTCTGGGAGGCCCCTCTTCACAATTTCGAGAATCGGTTACTTT
TGGAGAGAGAGAAGCACGATCTTTTGCAGGAGCTGCTGCTATTGCCGGAG
AATGCGGTGGTTCGTCGTATCAATGAGCTCGTCAAGAGAGCCAGGAGTGT
TAAGGTTCATGCATACATCATCCACTACCTGCGGAAGCAGATGCCATATG
TCATGGGCAAGCAGGAGAAGCAGGCACGGCTTCTGATTCGCCGACTAGAC
CAAGAGTTCCTGGCATGTGCAAGGCGGTACAGTCTTCCTTTGGGGGACTT
CCCCAAGGTGGATAAGTTCCGACGATCTTTGAGGGAGATCAAGGACATCA
GCAGATTCTCGAAGTTGGACAAGAGCCTGGTATATGAGATGGAAAAGGTC
TTCTCTGCCGACATACCCAAGCTCATGGAGAGGGCAGCTTCATCCCCAAG
AGACATGAGGGGAGGATAA
back to top