mRNA_C-tenellus_contig11624.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11624.1.1
Unique NamemRNA_C-tenellus_contig11624.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.190e-27
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   19 MEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFS-SVRYEMDRAAD-QYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFFSYMTDEERR 345
            MEVWNFERLA TP+LA AFE++++RALCHESV FL +V RYQ  +++ S R   + +   Q+  F +I   +I  G+PEEVNIS  DKKAI+D++  G   F  + +E+RR
Sbjct:  117 MEVWNFERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYATSARPSSESSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGEESFGGVNEEDRR 227          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.330e-27
Identity = 55/116 (47.41%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 RVSGQDMEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAA-DQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFFSYMTDEERR 345
            R   ++MEVWNFERLA TP+LA AFE++++RALCHESV FL +V RYQ  ++++   +  R++  Q+  F +I   +I +G+PEEVNIS  DKK I+++++ G   F  + +EERR
Sbjct:  360 RPEREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDAIRSSPSQFGTFCYITNTFIKAGSPEEVNISDADKKRILELYQKGEEHFEDVNEEERR 475          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.420e-26
Identity = 51/111 (45.95%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   13 QDMEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAADQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFFSYMTDEERR 345
            ++MEVW+FERL  TP+LA AFE++++RALCHESV FL +V RYQ  ++++          Q+  F +I   +I +GAPEEVNIS +D+K I+++++ G   F  + +EERR
Sbjct:  456 EEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAGTCPTQFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGEESFEEVNEEERR 566          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.840e-22
Identity = 46/113 (40.71%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   13 QDMEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAA--DQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFFSYMTDEERR 345
            QD+++W+FER+  TP+LA AFE+++++ALCHES  FL +V RYQ G+++        ++   Q+  F +I   +I +G+PEEVNIS +++K I+ ++  G   F  + +EERR
Sbjct:  446 QDIDIWDFERIVRTPLLAVAFEDYSKKALCHESFLFLSEVSRYQNGDYAMATRASSGSSCPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNEEERR 558          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.040e-22
Identity = 47/113 (41.59%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   13 QDMEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAA--DQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFFSYMTDEERR 345
            QD+++W+FER+  TP+LA AFE++++RALCHES  FL +V RYQ G++++       ++   Q+  F +I   +I +G+PEEVNIS +++K I+ ++  G   F  + D ERR
Sbjct:  343 QDIDLWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTIRASSGSSFPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNDAERR 455          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 7.510e-22
Identity = 46/113 (40.71%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   13 QDMEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAA--DQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFFSYMTDEERR 345
            QD+++W+FER+  TP+LA AFE++++RALCHES  FL +V RYQ G++++ +     ++   Q+  F +I   +I +G+ EEVNIS +++K I+ ++  G   F  +  EERR
Sbjct:  204 QDIDLWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTKRASSGSSFPTQFGTFCYITDTFIKAGSHEEVNISDKERKLILALYHKGEELFEDVNVEERR 316          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.510e-21
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   13 QDMEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSS-VRYEMDRAADQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFFSYMTDEERR 345
            ++MEVW+FERL  TP+LA AFE++++RALCHESV FL +V RYQ  ++++           Q+  F FI   +I +GAPEEVNI    +K I+++++ G   F  + +EERR
Sbjct:  385 EEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAAGTCPTQFGTFCFITDTFIKAGAPEEVNI----RKLILELYQKGEESFEEVNEEERR 492          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: D7FTV9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 8.320e-21
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   19 MEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAAD--QYEGFTFIVTKYIVSGAPEEVNIS---SRDKKAIMDIFRAGLLFFSYMTD 333
            MEVW+FER+ASTP+LA AFE++++RALCHESV FL +V RYQ  N+         ++   Q+  F +I   +I +G+PEEVNI    SR  + + ++  A L+     TD
Sbjct:    1 MEVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSPRIQFGSFCYITDTFIKAGSPEEVNIRMIFSRAHRDVKNMLEANLVLRFLNTD 110          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.350e-18
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 RVSGQDMEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAAD--QYEGFTFIVTKYIVSGAPEEVNIS---SRDKKAIMDIFRAGLLFFSYMTD 333
            R   ++MEVW+FER+ASTP+LA AFE++++RALCHESV FL +V RYQ  N+         ++   Q+  F +I   +I +G+ EEVNI    SR  + + ++  A L+     TD
Sbjct:  331 RSDREEMEVWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSPRIQFGSFCYITDTFIKAGSSEEVNIRMIFSRAYRDVKNMLEANLVLRFLNTD 446          
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Match: A0A6H5LA03_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA03_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.470e-17
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   19 MEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVRYEMDRAA--DQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMD 291
            MEVW+FERLA TP+LA AFE++++RALCHESV FL +V  YQ  ++++       ++   Q+    +I   +  +G+PEEVN S  DKKAI +
Sbjct:  482 MEVWSFERLARTPLLAVAFEDYSKRALCHESVLFLSEVSWYQNDDYATQTRASSGSSCPTQFGTLCYITDTFTKAGSPEEVNTSDADKKAIFE 574          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G2T5_ECTSI4.190e-2750.45RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T7_ECTSI4.330e-2747.41RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G2T8_ECTSI5.420e-2645.95RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JE98_9PHAE1.840e-2240.71RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW0_ECTSI2.040e-2241.59RGS domain-containing protein n=2 Tax=Ectocarpus s... [more]
D7FTW2_ECTSI7.510e-2240.71RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LEP9_9PHAE1.510e-2144.64RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTV9_ECTSI8.320e-2143.64RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW1_ECTSI3.350e-1841.38RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LA03_9PHAE6.470e-1746.24RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11624contigC-tenellus_contig11624:181..1404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTR6
Model size348
Max annot lvl2880.D8LTR6|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.7e-09
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
DescriptionRegulator of G protein signaling domain
Cds size330
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.1655424-CDS-C-tenellus_contig11624:180..2651680789187.1655424-CDS-C-tenellus_contig11624:180..265Choristocarpus tenellus KU2346CDSC-tenellus_contig11624 181..265 -
1680789187.180459-CDS-C-tenellus_contig11624:625..7511680789187.180459-CDS-C-tenellus_contig11624:625..751Choristocarpus tenellus KU2346CDSC-tenellus_contig11624 626..751 -
1680789187.1904283-CDS-C-tenellus_contig11624:1267..13861680789187.1904283-CDS-C-tenellus_contig11624:1267..1386Choristocarpus tenellus KU2346CDSC-tenellus_contig11624 1268..1386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.2029154-UTR-C-tenellus_contig11624:1386..14041680789187.2029154-UTR-C-tenellus_contig11624:1386..1404Choristocarpus tenellus KU2346UTRC-tenellus_contig11624 1387..1404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11624.1.1prot_C-tenellus_contig11624.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11624 181..1386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11624.1.1

>prot_C-tenellus_contig11624.1.1 ID=prot_C-tenellus_contig11624.1.1|Name=mRNA_C-tenellus_contig11624.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=110bp
MEVWNFERLASTPMLACAFEEFARRALCHESVQFLVDVFRYQEGNFSSVR
YEMDRAADQYEGFTFIVTKYIVSGAPEEVNISSRDKKAIMDIFRAGLLFF
SYMTDEERR*
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mRNA from alignment at C-tenellus_contig11624:181..1404-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11624.1.1 ID=mRNA_C-tenellus_contig11624.1.1|Name=mRNA_C-tenellus_contig11624.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1224bp|location=Sequence derived from alignment at C-tenellus_contig11624:181..1404- (Choristocarpus tenellus KU2346)
CGTGTTAGTGGTCAAGATATGGAAGTTTGGAACTTTGAGCGTCTGGCATC GACGCCCATGCTGGCCTGTGCATTTGAGGAATTTGCTAGGAGGGCCTTGT GCCATGAATCTGTCCAGTTCCTGGTAGATGTTTTCAGGTGTGGGAGAGGC AGTGATGGAGTACATGTTATCCACAGTGCAAGGAGAAAATGAAACAAGAG CCCCAGGAATAGAACTTATCCCTATATAAATTGCGGTCTGAAATCCACCC GTACTGTATAGATGTTCAGGGTAATATGTAGTATGGACTGCTGCGACGAC AAGCAGAGAAGGAGAAAGGAAAATAAAACTCTTGTACGTTGCATTCCTCT GACGTTATAAGGCGAAGGATATTAGAATATTCTTGCAAACTTGCTTGTAG AGGCCATGTTTGTCACTGTTCAAATTTAATTATTTTATTCCAGCAGCTTG AAACCAAACTGCTTTTCGAGACAGATTTTCGTTTTCAGTCTGAAAAATGT GGGCATATCTCTGTGGTACCTCTGAGCATTCCCTGAGGGGTTGGCTGTTT TGCGCACATTGTGAATGCAACTCCACAGGACAACCGTCTCTAGTTAAACC CGCATCTTTTTTGTTTACCATGGTCACAACACTGTTGACAATGCACAATC CAGATATCAGGAAGGGAACTTCTCAAGTGTGAGGTATGAGATGGATAGAG CTGCAGATCAGTACGAAGGATTCACGTTCATTGTTACAAAATACATTGTT AGTGGGGCACCAGAGGAGGTTAACATCAGGTGTGGATTAGTTTATAGAGA GTAGCAGAGAGCAGCTGATCAAGGCTGCTATTAGCCGATTATTCAACATA GCATCACCTCTCTTGGTATGGACTTGAGTGTATAGGCACCTTGGTACCTA GTAGGTCTTCAAATTTTGTACTTGTGTAGTAATGTTTTGCAATTGTGGCA GAGACTGTTACAGTGATGTTAACATAAGTTGTTTTTTTCTGTGTGACATA GTACATGCCCTAATGGAGTACATTTAGCAACCAGAAATGATGGCATTAGG AGAGGCAGCAGCTTTCTCGCCCAGAGTTTTCTTAGGTATTTTATCATGTC CCCTGAGAGTGAAATAGATTAATGGTTGTTTCTGTGCAGTTCCAGGGACA AGAAGGCGATCATGGACATCTTTCGAGCAGGGCTACTGTTCTTTTCATAC ATGACTGACGAAGAGAGGCGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11624:181..1404-

>mRNA_C-tenellus_contig11624.1.1 ID=mRNA_C-tenellus_contig11624.1.1|Name=mRNA_C-tenellus_contig11624.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=330bp|location=Sequence derived from alignment at C-tenellus_contig11624:181..1404- (Choristocarpus tenellus KU2346)
ATGGAAGTTTGGAACTTTGAGCGTCTGGCATCGACGCCCATGCTGGCCTG
TGCATTTGAGGAATTTGCTAGGAGGGCCTTGTGCCATGAATCTGTCCAGT
TCCTGGTAGATGTTTTCAGATATCAGGAAGGGAACTTCTCAAGTGTGAGG
TATGAGATGGATAGAGCTGCAGATCAGTACGAAGGATTCACGTTCATTGT
TACAAAATACATTGTTAGTGGGGCACCAGAGGAGGTTAACATCAGTTCCA
GGGACAAGAAGGCGATCATGGACATCTTTCGAGCAGGGCTACTGTTCTTT
TCATACATGACTGACGAAGAGAGGCGGTGA
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