mRNA_C-tenellus_contig11588.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11588.1.2
Unique NamemRNA_C-tenellus_contig11588.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: D7FN00_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN00_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 5.240e-125
Identity = 189/210 (90.00%), Postives = 201/210 (95.71%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GELVAADEKRFR LRS AE+EILQAADVICTTCVGAGDPRL N+NLRFRQVLIDEATQAMEAECLIPIV+GAKQLVLVGDHCQLGPVVLCKKS+KAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGER M Q++FPWP+PSKPMFFLM++GVEEISSSGTSYLNRTEA  VEKCVTRFL+ G+ P+QIGV
Sbjct:  620 GELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQVLIDEATQAMEAECLIPIVMGAKQLVLVGDHCQLGPVVLCKKSSKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERVMDQVDFPWPVPSKPMFFLMTTGVEEISSSGTSYLNRTEATAVEKCVTRFLQKGVTPDQIGV 829
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A6H5L258_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L258_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 3.040e-118
Identity = 189/249 (75.90%), Postives = 201/249 (80.72%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQ---------------------------------------VLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GELVAADEKRFR LRS AE+EILQAADVICTTCVGAGDPRL N+NLRFRQ                                       VLIDEATQAMEAECLIPIV+GAKQLVLVGDHCQLGPVVLCKKS+KAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGER M Q++FPWP+PSKPMFFLM++GVEEISSSGTSYLNRTEA  VEKCVTRFL+ G+ P+QIGV
Sbjct:  631 GELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSMPLLIHLADTVCGTRPKACLNKYEQVSSFTNVEWDAVLIDEATQAMEAECLIPIVMGAKQLVLVGDHCQLGPVVLCKKSSKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERVMDQVDFPWPVPSKPMFFLMTTGVEEISSSGTSYLNRTEATAVEKCVTRFLQKGVTPDQIGV 879
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A7S3XS25_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS25_HETAK)

HSP 1 Score: 326 bits (836), Expect = 1.690e-108
Identity = 160/210 (76.19%), Postives = 180/210 (85.71%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GEL AAD ++ R LR  AE+E+LQAADVICTTCVGAGDPRL N   RFRQVLIDEATQAMEAECLIP VLGAKQLVLVGDHCQLGPV++CKK+A+AGLTQSLFERLV LG RP+RLQVQYRMHPCLSE+PSNMFYEG+LQNGV   +R + +++FPWP P KPMFF  + GVEEIS SGTSYLNRTEA+ VEK VTR LK G  P+Q+GV
Sbjct:  110 GELSAADARKLRQLRGRAERELLQAADVICTTCVGAGDPRLANF--RFRQVLIDEATQAMEAECLIPAVLGAKQLVLVGDHCQLGPVIMCKKAARAGLTQSLFERLVRLGFRPIRLQVQYRMHPCLSEFPSNMFYEGSLQNGVGAADRRLPRLDFPWPEPDKPMFFQNAQGVEEISGSGTSYLNRTEASAVEKIVTRLLKEGARPDQVGV 317
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A482SZ26_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ26_9ARCH)

HSP 1 Score: 320 bits (821), Expect = 5.050e-105
Identity = 160/210 (76.19%), Postives = 178/210 (84.76%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GEL A D +RFR LRS AE+EIL AADVIC+TCVGAGDPRL NL  RFRQ+LIDE+TQAMEAEC IPIVLG KQLVLVGDHCQLGPVV+CKK+AKAGLTQSLFERLVLLGIRP+RLQVQYRMHP LSE+PSNMFYEGTLQNGV E +R +   EF WP P++PM+F MS+G EE+  SGTS+LNRTEAA VEK VT  LK    P+QIGV
Sbjct:   79 GELTAVDARRFRQLRSKAEREILMAADVICSTCVGAGDPRLANL--RFRQLLIDESTQAMEAECFIPIVLGVKQLVLVGDHCQLGPVVMCKKAAKAGLTQSLFERLVLLGIRPIRLQVQYRMHPVLSEFPSNMFYEGTLQNGVAETDRQLKSAEFLWPNPNRPMYFYMSTGNEEVGGSGTSFLNRTEAAAVEKIVTMMLKANFRPDQIGV 286
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A1S3XEX5_TOBAC (regulator of nonsense transcripts 1 homolog n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A1S3XEX5_TOBAC)

HSP 1 Score: 312 bits (800), Expect = 1.130e-104
Identity = 151/210 (71.90%), Postives = 179/210 (85.24%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GEL ++DEK+++ L+   E+EI Q+ADVIC TCVGAGDPRL N   RFRQVLIDE+TQA E ECLIP+VLGAKQ VLVGDHCQLGPV++CKK+A+AGL QSLFERLV LG++P+RLQVQYRMHP LSE+PSN FYEGTLQNGVT  ER  + I+FPWP+P++PMFF +  G EEIS+SGTSYLNRTEAA VEK VT FLK+G++P QIGV
Sbjct:   32 GELSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANF--RFRQVLIDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVFLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGV 239
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A453BG96_AEGTS (Helicase ATP-binding domain-containing protein n=7 Tax=Poaceae TaxID=4479 RepID=A0A453BG96_AEGTS)

HSP 1 Score: 318 bits (816), Expect = 7.710e-103
Identity = 153/210 (72.86%), Postives = 182/210 (86.67%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GEL ++DEK+++ L+   E+EILQ+ADVIC TCVGAGDPRL N   RFRQVLIDE+TQA E ECLIP+VLG KQ+VLVGDHCQLGPV++CKK+A+AGL QSLFERLV+LG++P RLQVQYRMHPCLSE+PSN FYEGTLQNGVT  ER  S I+FPWP+P++PMFF +  GVEEIS+SGTSYLNRTEAA VEK VT FL++G++P QIGV
Sbjct:  365 GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLSNF--RFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 572
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A453BGB6_AEGTS (Helicase ATP-binding domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BGB6_AEGTS)

HSP 1 Score: 318 bits (816), Expect = 2.470e-102
Identity = 153/210 (72.86%), Postives = 182/210 (86.67%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GEL ++DEK+++ L+   E+EILQ+ADVIC TCVGAGDPRL N   RFRQVLIDE+TQA E ECLIP+VLG KQ+VLVGDHCQLGPV++CKK+A+AGL QSLFERLV+LG++P RLQVQYRMHPCLSE+PSN FYEGTLQNGVT  ER  S I+FPWP+P++PMFF +  GVEEIS+SGTSYLNRTEAA VEK VT FL++G++P QIGV
Sbjct:  365 GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLSNF--RFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 572
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A453BGE4_AEGTS (Helicase ATP-binding domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BGE4_AEGTS)

HSP 1 Score: 318 bits (816), Expect = 4.430e-102
Identity = 153/210 (72.86%), Postives = 182/210 (86.67%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GEL ++DEK+++ L+   E+EILQ+ADVIC TCVGAGDPRL N   RFRQVLIDE+TQA E ECLIP+VLG KQ+VLVGDHCQLGPV++CKK+A+AGL QSLFERLV+LG++P RLQVQYRMHPCLSE+PSN FYEGTLQNGVT  ER  S I+FPWP+P++PMFF +  GVEEIS+SGTSYLNRTEAA VEK VT FL++G++P QIGV
Sbjct:  235 GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLSNF--RFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 442
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A067DPW2_CITSI (Uncharacterized protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DPW2_CITSI)

HSP 1 Score: 311 bits (797), Expect = 2.420e-101
Identity = 151/209 (72.25%), Postives = 180/209 (86.12%), Query Frame = 1 
Query:    4 ELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            EL ++DEK+++ L+   E+EI Q+ADVIC TCVGAGDPRL N   RFRQVLIDE+TQA E ECLIP+VLGAKQ+VLVGDHCQLGPV++CKK+A+AGL QSLFERLVLLG++P+RLQVQYRMHP LSE+PSN FYEGTLQNGVT  ER  S I+FPWP+P++PMFF +  G EEIS+SGTSYLNRTEAA VEK VT FL++G++P QIGV
Sbjct:    1 ELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF--RFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 207
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BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Match: A0A1D6EWH8_MAIZE (Regulator of nonsense transcripts 1-like protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6EWH8_MAIZE)

HSP 1 Score: 316 bits (810), Expect = 5.080e-101
Identity = 152/210 (72.38%), Postives = 181/210 (86.19%), Query Frame = 1 
Query:    1 GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQVLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQSLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTMSQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLKNGLIPEQIGV 630
            GEL ++DEK+++ L+   E+EILQ+ADVIC TCVGAGDPRL N   RFRQVLIDE+TQA E ECLIP+VLG KQ+VLVGDHCQLGPV++CKK+A+AGL QSLFERLV+LG++P RLQVQYRMHPCLSE+PSN FYEGTLQNGVT  ER  S I+FPWP+P++PMFF +  G EEIS+SGTSYLNRTEAA VEK VT FL++G++P QIGV
Sbjct:   79 GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLSNF--RFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 286
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11588.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN00_ECTSI5.240e-12590.00RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5L258_9PHAE3.040e-11875.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XS25_HETAK1.690e-10876.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SZ26_9ARCH5.050e-10576.19Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1S3XEX5_TOBAC1.130e-10471.90regulator of nonsense transcripts 1 homolog n=3 Ta... [more]
A0A453BG96_AEGTS7.710e-10372.86Helicase ATP-binding domain-containing protein n=7... [more]
A0A453BGB6_AEGTS2.470e-10272.86Helicase ATP-binding domain-containing protein n=1... [more]
A0A453BGE4_AEGTS4.430e-10272.86Helicase ATP-binding domain-containing protein n=1... [more]
A0A067DPW2_CITSI2.420e-10172.25Uncharacterized protein (Fragment) n=1 Tax=Citrus ... [more]
A0A1D6EWH8_MAIZE5.080e-10172.38Regulator of nonsense transcripts 1-like protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11588contigC-tenellus_contig11588:450..3786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN00
Preferred nameUPF1
PFAMsAAA_11,AAA_12,ResIII,UPF1_Zn_bind
Model size630
Max annot lvl2759|Eukaryota
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000294,GO:0000723,GO:0000781,GO:0000784,GO:0000785,GO:0000932,GO:0000956,GO:0001101,GO:0001666,GO:0002237,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006449,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007548,GO:0007549,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008298,GO:0008334,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009790,GO:0009863,GO:0009867,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010610,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022414,GO:0023052,GO:0030054,GO:0030466,GO:0030538,GO:0030554,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032268,GO:0032269,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034427,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035112,GO:0035145,GO:0035194,GO:0035639,GO:0035690,GO:0035770,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036464,GO:0040029,GO:0042162,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0042742,GO:0042886,GO:0043021,GO:0043024,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043412,GO:0043487,GO:0043488,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044530,GO:0044770,GO:0044786,GO:0044877,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048571,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050779,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051721,GO:0055044,GO:0060249,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070478,GO:0070482,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071044,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071236,GO:0071310,GO:0071322,GO:0071345,GO:0071347,GO:0071395,GO:0071396,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098687,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902679,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2000622,GO:2000624,GO:2000815,GO:2001141
Exons4
Evalue8.6e-126
EggNOG OGsCOG1112@1|root,KOG1802@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cds size630
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.9902372-CDS-C-tenellus_contig11588:449..6231680789184.9902372-CDS-C-tenellus_contig11588:449..623Choristocarpus tenellus KU2346CDSC-tenellus_contig11588 450..623 -
1680789185.0027306-CDS-C-tenellus_contig11588:1315..14201680789185.0027306-CDS-C-tenellus_contig11588:1315..1420Choristocarpus tenellus KU2346CDSC-tenellus_contig11588 1316..1420 -
1680789185.0111086-CDS-C-tenellus_contig11588:2007..22081680789185.0111086-CDS-C-tenellus_contig11588:2007..2208Choristocarpus tenellus KU2346CDSC-tenellus_contig11588 2008..2208 -
1680789185.021999-CDS-C-tenellus_contig11588:3636..37861680789185.021999-CDS-C-tenellus_contig11588:3636..3786Choristocarpus tenellus KU2346CDSC-tenellus_contig11588 3637..3786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11588.1.2prot_C-tenellus_contig11588.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11588 450..3786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11588.1.2

>prot_C-tenellus_contig11588.1.2 ID=prot_C-tenellus_contig11588.1.2|Name=mRNA_C-tenellus_contig11588.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=210bp
GELVAADEKRFRHLRSLAEKEILQAADVICTTCVGAGDPRLCNLNLRFRQ
VLIDEATQAMEAECLIPIVLGAKQLVLVGDHCQLGPVVLCKKSAKAGLTQ
SLFERLVLLGIRPVRLQVQYRMHPCLSEWPSNMFYEGTLQNGVTEGERTM
SQIEFPWPMPSKPMFFLMSSGVEEISSSGTSYLNRTEAAVVEKCVTRFLK
NGLIPEQIGV
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mRNA from alignment at C-tenellus_contig11588:450..3786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11588.1.2 ID=mRNA_C-tenellus_contig11588.1.2|Name=mRNA_C-tenellus_contig11588.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3337bp|location=Sequence derived from alignment at C-tenellus_contig11588:450..3786- (Choristocarpus tenellus KU2346)
GGGGAGTTGGTCGCAGCAGATGAAAAACGATTCCGTCACCTGAGGTCTCT
AGCAGAAAAAGAGATTCTGCAGGCTGCAGATGTTATATGTACTACCTGTG
TGGGTGCCGGGGATCCTCGCCTGTGCAACTTGAATCTAAGATTCCGACAG
GTGAGGTTTTTTTGGGGGGGGGGTGAGGGCTTCTTTGTAGCAGTTGACCA
GAGAGGATGGGAACAGGAAGTGGCTGGAAGGGGAGGGGGAGGGGGGGGTG
AATATGATTGGAGGGCTCTTGAGTGTAAGGGCTCGGTTGTTATTGGTGCG
AGTTCTTATATTTTAATTTATTGACAGAGTGTATCGTTTGTTGAATTTTT
GAGAAAATATATATATATATATATATATTTGTTTTGCGGAGTTGGTGTTG
TTTTTATTTTTTTTATTGTTCTTTTTGTCCTGATAGCCCTCTTATGGGGT
TGGGGCTGATGAGTATTCTTCTACAATACGGAAGCGTTGTTTTGATCATT
TTGACTTTACAAAGTCAATCAAACTTGAACACTTTATAATCTGTTCTTTG
GACCGTCCTGTTTTTCCCATTCTCCTTCACCTCCTCTCCTCTCCTCTCCT
CTCCCACTTTGTCCTCATCATGTTGTTGTCCCTTCGCCACCCCCACCCCC
AATGAAATTTGTTACTACATTTTTATTGTTGTATTGCAATTCTCCTAAAG
ATGGTGATACTGATAGGTTTGGAGAGGTTGCATCCCTTTGTCGAAGTATC
ACAACATTCTAGATTGAAGGCTATCTATAGTAACTGCATTGAACTTAGTA
ACTTAGTAGTTAGTAGTTTTTTTTCTTGGGGGAGGGGGGTTGTATCGTGC
CCATTTTAGGTATTGTTTGTAACAGTCAAACCTCCGATTTTTTTAAGGCC
ACGGGAGACAGAGTGCAGAAGCTTAGGGTTAGGGATGGGAATTGTTGGAC
AGGAGCACCAGGTGAATTGGTTGGGAAGCGTAATGGCTCTCTCTTTTTTC
TTATTTTATTTTTGTAGATGTATGAAGGTCAACTCACATGGTAGAATCAA
ACATTCTTTCGGAGTTGTACTTTTCTGCCTTCTGGAAACTGCCAATGTTT
TGGTGAACGTCGTGGAGCTTACAAAATTAGACAAATTGAGGCACAGGTTT
TTCACTGGAATGTAATTTGCAGTTGTTTGTTTCATGAATATTTTTTTTCC
ATGAATATTTTTTTTCCGTCGGTGCGCGTATGAATGCCCACTGAAAAATA
AATAAATAAAAGAGTTCAGATTAAGAGCATTTGTGTGTGATTTTTGTAAA
TTTAGTTTATGTATCTTGAAATCATGATCAATAATTACATACATACATAC
ATACATACATACATACATACATACATACATACATACATACATACTCATTT
TGCAACTGCCACAGTGGGGGATCAATAGGAGTGATCCTTGCCCCGCTTTC
CCTTGGAATTATTCTGGAGTGAACACTTTTATCATCCCCCCCCCACACAC
ACACACACACATCTGATTTATGGCACTTTGCTGCCTGTGCCATGGATGTC
ACATGGTCTTTTATGACATCATTGTTAGGTACTTATTGACGAAGCAACTC
AGGCCATGGAGGCAGAGTGTCTCATCCCCATTGTACTTGGTGCCAAGCAA
CTGGTACTGGTTGGGGACCATTGCCAGCTGGGACCTGTGGTTCTCTGCAA
GAAGTCCGCCAAGGCTGGACTCACACAGTCCCTCTTTGAGAGACTGGTTT
TACTAGGCATTCGACCTGTTCGACTGCAGGTATTTGAGTGCGTTGATTGA
TAGTACAAGCCACTTTGAAGTATGATGCCAAACCCATTGGAAGTGGAACA
GTGGTAGCATCTAAATGTTTGACAAAATCAGAGGTTTTGGGACTGAACCC
CGACTGGTCCGTGTTCCCAGGTACTTTCAGGTACTTTCAGGAGGTTAAAC
ATTGAAGCACGGTCTTGAGTATTGGAAGAGGGTAAACTCAAAGATTGAGA
TGATTTCTCAGATATGGAGCACGCGATTGGTTGTGTGACGGACGGCCCAT
GGATTATGATGGGTAGATTCCAATCCCCTTCCTTGTGATTTTTTCGAACA
TTGAACTGATATTTAGATGACAGCATTGAGATGACAACATGGAGATGACA
CTGTTCTCACAGGGGCAGAGAGTCGCCCTGTGAACATTGATGTTTTGACG
TCTGGCGGTTGAAAGTGAAAAGCATCAACAGTCATGAACGACGAATCCCC
CTCGCTGAAATGATGTCGTTGATGATGTTAGATTATGTCATTGATGATGT
TAAGTGATGTCATTGAAGTTTTTTCGCTTGAGAATATGATCTGTGCAAGT
CTCCCTCGTCTTGTAGGTTCAGTACCGGATGCATCCGTGTCTGTCGGAGT
GGCCGTCCAACATGTTCTATGAGGGTACGCTTCAGAATGGAGTCACGGAG
GGAGAGAGAACCATGAGTCAGGTACTGGTTTTTGTTTCTTGGGGGGGGGG
GTGCTTACTATGGTCAGTGGTTTGTGTTCCGAGTGCCTCTTTAGTTTAAA
AGTCTTTCAATACAATACAAAACAATACAATACAAACCAACAGCATTTCT
ACCGCAACGTGCTCAGGGTACAAGTTCTATCCCCATAAAGGGTACAAGTT
CTGTCCCATAAAAGGTACAAGTTCTGTGATTGGAGACCACTCCCGCTGAT
GGCAAGAACACACGCGCTGTTTTGAACAGAGTTGTGTTTCGTGGGGGGAG
GGGGGCGGTGAAGTTTTGGTAGTGAATAAATAAATACCCTGCGTTGGCCG
GTTGTGTGACATGCGGATGGACGACGAGAGTATTGATTTTTTAAGCGCAA
ACATTCTTTTTAATATTTGACAAACAAAAAAGAAGTATAATTTGGTCCTC
TCTCTCTCTCTCTCTATCTATCTATCTATCTATCTATCTTTCTCTTCTCA
CGATGCTCTTTGACAGAAAGAACACCGAACACCTTGAAGGTCTCACACCA
CATCCCGATTTATTTTTTTATTTTTTTATTTTCAAAAATAAACACGTCCG
TTATCTATTGTGCGCCTCGTGTGTGGTGTGTGTGTGTGTGTGTACAACTA
ATGTGTGCGTGCGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGGGT
ATCCCGTTGGTAGATCGAGTTCCCATGGCCGATGCCATCGAAGCCTATGT
TCTTCCTCATGTCCTCCGGCGTGGAGGAGATATCCTCCTCGGGGACGTCG
TACCTCAATCGGACTGAGGCCGCAGTGGTGGAGAAGTGTGTCACCAGGTT
CCTCAAGAACGGTCTGATACCGGAGCAGATTGGGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig11588:450..3786-

>mRNA_C-tenellus_contig11588.1.2 ID=mRNA_C-tenellus_contig11588.1.2|Name=mRNA_C-tenellus_contig11588.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=630bp|location=Sequence derived from alignment at C-tenellus_contig11588:450..3786- (Choristocarpus tenellus KU2346)
GGGGAGTTGGTCGCAGCAGATGAAAAACGATTCCGTCACCTGAGGTCTCT
AGCAGAAAAAGAGATTCTGCAGGCTGCAGATGTTATATGTACTACCTGTG
TGGGTGCCGGGGATCCTCGCCTGTGCAACTTGAATCTAAGATTCCGACAG
GTACTTATTGACGAAGCAACTCAGGCCATGGAGGCAGAGTGTCTCATCCC
CATTGTACTTGGTGCCAAGCAACTGGTACTGGTTGGGGACCATTGCCAGC
TGGGACCTGTGGTTCTCTGCAAGAAGTCCGCCAAGGCTGGACTCACACAG
TCCCTCTTTGAGAGACTGGTTTTACTAGGCATTCGACCTGTTCGACTGCA
GGTTCAGTACCGGATGCATCCGTGTCTGTCGGAGTGGCCGTCCAACATGT
TCTATGAGGGTACGCTTCAGAATGGAGTCACGGAGGGAGAGAGAACCATG
AGTCAGATCGAGTTCCCATGGCCGATGCCATCGAAGCCTATGTTCTTCCT
CATGTCCTCCGGCGTGGAGGAGATATCCTCCTCGGGGACGTCGTACCTCA
ATCGGACTGAGGCCGCAGTGGTGGAGAAGTGTGTCACCAGGTTCCTCAAG
AACGGTCTGATACCGGAGCAGATTGGGGTG
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