mRNA_C-tenellus_contig11568.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11568.1.2
Unique NamemRNA_C-tenellus_contig11568.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11568.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11568contigC-tenellus_contig11568:165..4123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRC2
PFAMsHis_Phos_1
Model size1583
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.02e-10
EggNOG OGsKOG4754@1|root,KOG4754@2759|Eukaryota
Descriptionisomerase activity
Cds size363
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.0396013-UTR-C-tenellus_contig11568:164..1781680789184.0396013-UTR-C-tenellus_contig11568:164..178Choristocarpus tenellus KU2346UTRC-tenellus_contig11568 165..178 +
1680789184.0885575-UTR-C-tenellus_contig11568:2917..41231680789184.0885575-UTR-C-tenellus_contig11568:2917..4123Choristocarpus tenellus KU2346UTRC-tenellus_contig11568 2918..4123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.0499642-CDS-C-tenellus_contig11568:178..3241680789184.0499642-CDS-C-tenellus_contig11568:178..324Choristocarpus tenellus KU2346CDSC-tenellus_contig11568 179..324 +
1680789184.068016-CDS-C-tenellus_contig11568:2153..22861680789184.068016-CDS-C-tenellus_contig11568:2153..2286Choristocarpus tenellus KU2346CDSC-tenellus_contig11568 2154..2286 +
1680789184.078674-CDS-C-tenellus_contig11568:2833..29171680789184.078674-CDS-C-tenellus_contig11568:2833..2917Choristocarpus tenellus KU2346CDSC-tenellus_contig11568 2834..2917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11568.1.2prot_C-tenellus_contig11568.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11568 179..2917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11568.1.2

>prot_C-tenellus_contig11568.1.2 ID=prot_C-tenellus_contig11568.1.2|Name=mRNA_C-tenellus_contig11568.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=121bp
MVTQLNKAFWRVSSENGLGLLDEVGFASLLSGCSLTPQEMKWLLCAMDRE
WRGMISFDDLLTAITAFYSIEGATNSSITHKDQVHLQAHYQWKMSGTTLS
DRDTLVWIFRQIVTTLQSVG*
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mRNA from alignment at C-tenellus_contig11568:165..4123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11568.1.2 ID=mRNA_C-tenellus_contig11568.1.2|Name=mRNA_C-tenellus_contig11568.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3959bp|location=Sequence derived from alignment at C-tenellus_contig11568:165..4123+ (Choristocarpus tenellus KU2346)
GGCTTTCGCTGGGGATGGTGACCCAACTAAACAAGGCCTTCTGGCGGGTT
TCCTCTGAGAACGGCTTGGGCCTGCTGGATGAGGTGGGTTTTGCCAGCCT
GCTGTCTGGTTGCAGCCTCACTCCCCAGGAGATGAAGTGGCTCTTGTGTG
CAATGGACAGGTGATTGTTACATTAGAATAGTTATTATTATTGTCAGGTT
GACACAACCCACATCTTGATATGCACACAGCCGCAAAGGCATGGGCACAT
ACATTGGAAAAAAGACAAAATATGTCCGTTGCATTCTAGTTCGCAATGCC
TCTTTTGTCGTTTTTCATCAAACTCTCCGGTCCAGGTGTTTTTGGTAGTG
TCTATTGTCCGAACAAGGCTTTCTTCTGTAATGCTGGATTAGCTGTGTTA
TGTAAGCGTAATGTTTTCCAAGATGTGAGATGATAATACCAAGGTTTGTA
CACAATAACACGGCTTTTTTTTTCTATTTTGTGCATACAGAACTATCTAC
AACGTTTCTGGAAAGCGTTGTGGACAACTGAGTAGTCCTGAGCACACTTG
AGTATATGAGATGACAGCAAAGAATGAGAAAAATGTAGGGCGAAGCAAAG
ACGGTGTTGAAAAGAGGCTATCAATATTCAAGCAGACTTACCTTGACATT
TTTTAGAGGTACAGATGAATGAGATGGGGAGGGTGGTGTGCGCCTATCTG
GTCGCTACATTGGATGAGGAAGTCTTGCTGTGTAGATAAAAATTCTCTGG
AAGTACATGTTTTTCTCATGTGCTGGTCTGCAAACCACTCACCTACTTCT
TCATCCAGGTGTGAACTTGCCAGTTTTTATCAGTGTGTCGCTGGAGGAAT
TGGGACTGCTGATAGTGAAGGAATTGACAGTCAAAATACCACAATGTGCA
TGAATTGGGTGAAAATGCAGATGTTGCTGTGGGCCTCGGATTGATACTGT
GAATACCCGTTTGAATTTGAAGGTCGAGTCATTTAATACTACTGGTGTGG
TCTCTATTTCAGTAGGAGCAACAGCATTTGTATCTGTACCGTATTATGGC
AGGGGTGTGAATTCGGGTTTCCAATACGATAAATTACTGTGTATTCTGGT
TTTTCCACATACAGTGGTGTTGAACCAGTCTTACACACACACACACATAT
ATATAATATCATTATGCACCCTTGTATCCTTTAATACATTGTAGTATAAC
AGTACTATTAATACAGAACATAGCATTCTGACTATAAAAGTATGCTAGCT
CTTGCTGCATCTTGCAAGGGCAATTATGGTTTTGGTGAGTTAAGGTGCCT
TCAACTCGATCTCTTCTGGAGTATATTTGATTTGTTTTATGGTTTAGTTT
GTTCTGCTCTCTGTAAAACGCAAGCAAAGTGTAAGGGGAGTGTGCATCAT
CATGCATGCATGACTCTATTTGAAAGTAACTCCTACCTTCCCTCCCCCCT
CCTCGGACCAGATGGCACACCACATCATGAGAGAGTAGGGTCAAACAAGC
CAGTATTTTCATTGGCATCCTTCTTACCCTTTGCTACACCTTATGTTTGC
TACACTGAAGTATAGTATTATGTATTTGGATATTTTGAACTTGACCTTCC
CACCCACCACACCTCACCTCTCCCTTACGCACTACAGTGGTGCATTATGT
TCCATCACGGATATAGGTAGGGTACAAGTGCTTGGTGATACACCAATCTT
CCTGAGAAAACATAGATTCACCTCCAATAGAGTAAGGGGGGGTTGGTTGG
TTGTTATGATATCATGTGGTAAGCACATATTACTGATGGCTTAAGCTGTG
AACCCAAGATACTGTTGACTGTTCCTTTACCAGTCCTCTGACTAAACTGC
AAACCTGTGTACACTCTTGCGTCAAACAGGATTTTAACTCAAAACTGAAG
CCTTTTTCTCCCTGTGTACTGGCTCTCTCTTTCTGTCTGGCTCTGTCTCT
TTGTGTCTGTTCTGTTTATATGTTACGGCTGTGTGAAAGGGAGTGGCGAG
GTATGATATCCTTCGATGATCTTCTTACTGCCATTACAGCTTTCTACTCA
ATTGAAGGTGCCACCAACAGCTCAATCACTCACAAAGATCAAGTGCACCT
TCAAGCACACTACCAGTGGAAGGTACCCTGCGTTGTACTCCCCTCCCTCC
AATACGCCTTCCCCTCCACAAATGTTGCTCTTGTCTGTGTCCATTGCTCA
CTATACGCCAGAGGTACGGTTGGTGTTGATCTGCTCCTATCCCTTTACAG
GTGCATTTTAATAATCTGCTACGAAGTATACTGGCTGCTTCTATGTTAAC
TTGAAGAGTCTGGTGCACTCAACTGGTGGGCACTCCACTATTTCTATTTT
CTGGTAAACTTTGCAAGTCATATTGGCCTTGTGAGAGTGTGTTCATCTTG
CAACATTTGTTTTTTAATACATTTGTGTGATTTCTTTCTGTGTGATGGTA
CTACTAATAGACATGTATGTGCACCCACCACACCACCCTCACTAGCAAAA
CCAAGGCGTGAAATATTTAGACCAAGCTTGTGGGATTGGTGGGTGGACTT
TGGCTAATGGAGCCTTAGTCTCACCTACCTCTGTGTTTGAATGATCAATC
AATCAATGAGTTTATTCCATTCCTCCCATGTGTGTGTGTGTGTGTGCGTG
TGTGTATTGTTGAGTACAGATGAGCGGCACAACACTGTCAGACCGTGATA
CACTGGTTTGGATATTCCGACAGATCGTGACAACATTGCAGAGTGTGGGA
TAGAGCATACTCTTCAATTCCAACCTTGCAGTCAAGACACACCACACTTG
TTCATACTTTAGAAATGGGGTTTGTTTGACATTACATACCTGACTTGGCG
CACATGTGAGGAAACGTCCTCTGTTCCTTAGGATCTTTTCTACCCTTGGA
CTTACAGTGATGCATGTTTGAAGTCCTATCCGAGGTAACTTCAGGAGCTT
TGTTTTTTGGACGTGAGGCAGATGTAACCCAAATTTATGTCCATATATAC
TTAGTACCTTGAACTACATAGTTTGGAAACTGTTGTGGGTTGATGGTAGG
GTGAAACAAACACAAAGGGACCGTCTGTACTAGCGCTAAAAAGTATTGTA
TCAGTTTAAGAGATGCATCTCCAAATGTTGTTAGCATATAGAACTCTAAT
TGCAGAGTGGCATGGGGGGATGTTTATATATGCTGAGTTCTACATAGAAT
GGACTTTTGAGGTTCCTGTTTGGCTCCTATTTCAACCTGGTGAGTTGAGG
GGATTTTGCCCCACAATCTGTGTTTGGTGTTCAGTTGCTGCACATGGAAT
TCACTCTCTTAGCTGTTTTTAGTGGAGTGGCAACTAAACTGGAGCTTTCA
CCAAACACTGAGATAATAAGTTGATACTACTCGTATATACCCAGAATATA
TAGTATATTTTAGGTAAGTAGGTGTTCATTCATTTTTTCTATCAAGAGCA
CTCCTGATATTTTGTGGTGTTGTCAGGGGTGAGACAAGAGGCAATGCATG
AAAAACTGAGCTTATGTTGTGCTTGTTCACTTTGCTGTAGTAACAACAAT
GTAGTGTGGAGTACATGCTACCTGTTTATTTTGTGTAGGAGGAATCAGTG
TGTGGGGTGGTAGATGTTGTAAATCATGAAGATTTCAATCCCCACAATAT
GCTGATGAACTCACTTTCCCCAGCATGATTTGTGCTGCATGCATATATAT
TCCAATTTTATTGTAGTATTATGTTACTAATAGTACCACAGCACTTACAG
GTTACTGTTAATTGAGATTTCATTTTATTTTTATGACTTGGGCAAAGTAG
TCCCAATACTAGCTCACAAAGTTTCAGTGTACTTTTAACCATTCAGAGGG
GCAGTATACTAGTTGCTTTGTCCTGCTTTAAGCACGAAACAGAGTAGCAT
TGAGTCGTTGACCAGTAAGGTATGCTTCACAAAAACACAGATGCTGTGTC
TTGATGCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig11568:165..4123+

>mRNA_C-tenellus_contig11568.1.2 ID=mRNA_C-tenellus_contig11568.1.2|Name=mRNA_C-tenellus_contig11568.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=363bp|location=Sequence derived from alignment at C-tenellus_contig11568:165..4123+ (Choristocarpus tenellus KU2346)
ATGGTGACCCAACTAAACAAGGCCTTCTGGCGGGTTTCCTCTGAGAACGG
CTTGGGCCTGCTGGATGAGGTGGGTTTTGCCAGCCTGCTGTCTGGTTGCA
GCCTCACTCCCCAGGAGATGAAGTGGCTCTTGTGTGCAATGGACAGGGAG
TGGCGAGGTATGATATCCTTCGATGATCTTCTTACTGCCATTACAGCTTT
CTACTCAATTGAAGGTGCCACCAACAGCTCAATCACTCACAAAGATCAAG
TGCACCTTCAAGCACACTACCAGTGGAAGATGAGCGGCACAACACTGTCA
GACCGTGATACACTGGTTTGGATATTCCGACAGATCGTGACAACATTGCA
GAGTGTGGGATAG
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