mRNA_C-tenellus_contig11482.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11482.2.1
Unique NamemRNA_C-tenellus_contig11482.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11482.2.1 vs. uniprot
Match: A0A8K1IYZ2_9RICK (MFS transporter n=1 Tax=Rickettsia endosymbiont of Cimex lectularius TaxID=2698648 RepID=A0A8K1IYZ2_9RICK)

HSP 1 Score: 63.9 bits (154), Expect = 1.530e-10
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   10 ISFKKALFLWSLASIFLAFQFILRLSTGILREEITQKFAID 132
            +S KK L LWSLA++F AFQFILRLSTGILREEI QKFAID
Sbjct:    5 LSLKKPLLLWSLATLFFAFQFILRLSTGILREEIIQKFAID 45
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BLAST of mRNA_C-tenellus_contig11482.2.1 vs. uniprot
Match: A0A261DAB6_9RICK (MFS domain-containing protein n=3 Tax=unclassified Rickettsia TaxID=114295 RepID=A0A261DAB6_9RICK)

HSP 1 Score: 63.2 bits (152), Expect = 2.870e-10
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   10 ISFKKALFLWSLASIFLAFQFILRLSTGILREEITQKFAID 132
            +S KK   LWSLAS+F AFQFILRLSTGILREEI QKFAID
Sbjct:    5 LSLKKPFLLWSLASMFFAFQFILRLSTGILREEIMQKFAID 45
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BLAST of mRNA_C-tenellus_contig11482.2.1 vs. uniprot
Match: A0A3S0AV35_9RICK (MFS transporter n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A3S0AV35_9RICK)

HSP 1 Score: 58.2 bits (139), Expect = 1.680e-8
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MSNISFKKALFLWSLASIFLAFQFILRLSTGILREEITQKFAIDAA 138
            M N  + K + +WSLA++F A+QFILRLS GILRE+I QKFA+D A
Sbjct:    1 MVNSPYSKPVLIWSLANLFFAYQFILRLSAGILREQIMQKFAVDCA 46
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BLAST of mRNA_C-tenellus_contig11482.2.1 vs. uniprot
Match: A0A2A5BDN7_9RICK (MFS domain-containing protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDN7_9RICK)

HSP 1 Score: 57.0 bits (136), Expect = 4.310e-8
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 MSNISFKKALFLWSLASIFLAFQFILRLSTGILREEITQKFAIDAA 138
            M+NIS KK++ L SLA++F  FQFILRLS G+ RE+I Q+FA+D A
Sbjct:    1 MNNISLKKSILLLSLANLFFFFQFILRLSAGVFREDIMQRFAVDVA 46
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BLAST of mRNA_C-tenellus_contig11482.2.1 vs. uniprot
Match: A0A7V9T321_9RICK (MFS transporter (Fragment) n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A7V9T321_9RICK)

HSP 1 Score: 56.2 bits (134), Expect = 6.440e-8
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   19 KKALFLWSLASIFLAFQFILRLSTGILREEITQKFAIDAA 138
            KK L LW LA++F AFQFILRLS GILRE+I QKF++DA+
Sbjct:    7 KKYLALWCLANLFFAFQFILRLSAGILREDIIQKFSVDAS 46
[Close]
BLAST of mRNA_C-tenellus_contig11482.2.1 vs. uniprot
Match: A0A4Q3DJ34_9RICK (MFS transporter n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A4Q3DJ34_9RICK)

HSP 1 Score: 52.8 bits (125), Expect = 1.350e-6
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 KALFLWSLASIFLAFQFILRLSTGILREEITQKFAIDAA 138
            K L LW+  ++F AFQFILRLS GILRE+I Q+FAID A
Sbjct:    5 KPLVLWTFCTLFFAFQFILRLSVGILREDIIQRFAIDTA 43
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11482.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A8K1IYZ2_9RICK1.530e-1080.49MFS transporter n=1 Tax=Rickettsia endosymbiont of... [more]
A0A261DAB6_9RICK2.870e-1080.49MFS domain-containing protein n=3 Tax=unclassified... [more]
A0A3S0AV35_9RICK1.680e-860.87MFS transporter n=1 Tax=Rickettsiales bacterium Ta... [more]
A0A2A5BDN7_9RICK4.310e-860.87MFS domain-containing protein n=1 Tax=Rickettsiale... [more]
A0A7V9T321_9RICK6.440e-870.00MFS transporter (Fragment) n=1 Tax=Rickettsiaceae ... [more]
A0A4Q3DJ34_9RICK1.350e-666.67MFS transporter n=1 Tax=Rickettsiaceae bacterium T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11482contigC-tenellus_contig11482:5043..5204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size162
Hectar predicted targeting categorysignal peptide
Exons1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.2324321-CDS-C-tenellus_contig11482:5042..52041680789180.2324321-CDS-C-tenellus_contig11482:5042..5204Choristocarpus tenellus KU2346CDSC-tenellus_contig11482 5043..5204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11482.2.1prot_C-tenellus_contig11482.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11482 5043..5204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11482.2.1

>prot_C-tenellus_contig11482.2.1 ID=prot_C-tenellus_contig11482.2.1|Name=mRNA_C-tenellus_contig11482.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=54bp
MSNISFKKALFLWSLASIFLAFQFILRLSTGILREEITQKFAIDAACLRS
GIR*
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mRNA from alignment at C-tenellus_contig11482:5043..5204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11482.2.1 ID=mRNA_C-tenellus_contig11482.2.1|Name=mRNA_C-tenellus_contig11482.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=162bp|location=Sequence derived from alignment at C-tenellus_contig11482:5043..5204+ (Choristocarpus tenellus KU2346)
ATGTCAAATATTTCTTTCAAAAAGGCACTGTTCCTGTGGTCTTTGGCGAG
TATATTCCTTGCCTTTCAATTTATCTTAAGGCTATCTACTGGTATCCTAA
GGGAAGAAATTACTCAAAAATTTGCTATTGATGCGGCTTGTCTACGCAGT
GGGATTCGTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11482:5043..5204+

>mRNA_C-tenellus_contig11482.2.1 ID=mRNA_C-tenellus_contig11482.2.1|Name=mRNA_C-tenellus_contig11482.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=162bp|location=Sequence derived from alignment at C-tenellus_contig11482:5043..5204+ (Choristocarpus tenellus KU2346)
ATGTCAAATATTTCTTTCAAAAAGGCACTGTTCCTGTGGTCTTTGGCGAG
TATATTCCTTGCCTTTCAATTTATCTTAAGGCTATCTACTGGTATCCTAA
GGGAAGAAATTACTCAAAAATTTGCTATTGATGCGGCTTGTCTACGCAGT
GGGATTCGTTGA
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