mRNA_C-tenellus_contig11456.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11456.1.1
Unique NamemRNA_C-tenellus_contig11456.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: D7FK08_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK08_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 9.800e-55
Identity = 98/175 (56.00%), Postives = 132/175 (75.43%), Query Frame = 1
Query:   22 ETKTTIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKAKNGPRSDRLRE-SLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVVDENE--GEGEIS 537
            ET   +IN YRV + +G+GS+G VY VVHV TG   AMKVI K + G +   L E +L+REV VM+ LRHPN+VTLWEVIDDPR++KVYMIQ++ME+G++L E + V+P+ E  A++ F+QAARGL Y+HS  I HGD+KPSN+LE   G++KI DFGAC +V+  +  G+G+IS
Sbjct: 1028 ETSGRVINDYRVCERIGEGSFGVVYKVVHVHTGEVNAMKVITKPRRGGQKRELLERTLRREVSVMQMLRHPNVVTLWEVIDDPRSRKVYMIQDFMERGSLLKEQYEVDPIPEHTAISKFIQAARGLQYIHSFGIIHGDMKPSNILEDAEGRVKIADFGACVIVNSEDAGGDGDIS 1202          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A6H5KED2_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED2_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 4.590e-54
Identity = 97/175 (55.43%), Postives = 132/175 (75.43%), Query Frame = 1
Query:   22 ETKTTIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKAKNGPRSDRLRE-SLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVVDENE--GEGEIS 537
            ET   +IN YRV + +G+GS+G VY VV V TG   AMKVI K++ G +   L E +L+REV VMK LRHPN+VTLWEVIDDPR++KVYMIQ++ME+G++L E + V+P+ E  A++ F+QAARGL Y+HS  I HGD+KPSN+LE   G++KI DFGAC +++  +  G+G+IS
Sbjct: 1155 ETSGRVINDYRVCERIGEGSFGVVYKVVRVHTGEVNAMKVITKSRRGGQKRELLERTLRREVSVMKILRHPNVVTLWEVIDDPRSRKVYMIQDFMERGSLLKEQYEVDPIPEHTAISKFIQAARGLQYIHSFGIIHGDLKPSNILEDAEGRVKIADFGACVIINPEDAGGDGDIS 1329          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A6H5LNX5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNX5_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 6.690e-52
Identity = 94/167 (56.29%), Postives = 115/167 (68.86%), Query Frame = 1
Query:   31 TTIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKAKNGPRSDR--------LRESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVV 507
            T IINKYR+  E+GKGSYGSV+      TG+ YAMKVI+K K G    R        L E+L+REV VMKKLRHPN+VTLWEVIDDP+AQ++YMIQEY+  G +LPE   V P+  E A   FV   RGLH+LH H + HGDIKP NLL ++ G +KI DFGA  ++
Sbjct:   97 TIIINKYRIICELGKGSYGSVHLCRDGETGIEYAMKVIDKRKRGGMRSRQGQGGHQHLAETLRREVAVMKKLRHPNIVTLWEVIDDPKAQQLYMIQEYVADGPLLPEGVVVSPMDTEEARDKFVGCIRGLHHLHQHGVVHGDIKPQNLLVAKDGTVKIADFGAAVML 263          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.780e-48
Identity = 92/167 (55.09%), Postives = 115/167 (68.86%), Query Frame = 1
Query:   31 TTIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKAKNGPRSDR--------LRESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVV 507
            T IINKYR+  E+GKGSYGSV+      TG+ YAMKV++K K G    R        L E+L+REV VMKKLRHPN+VTLWEVIDDP+AQ++YMIQEY+  G +LPE   V P+  E A   F+   RGLH+LH H + HGDIKP NLL ++ G +KI DFGA  ++
Sbjct:  563 TIIINKYRIICELGKGSYGSVHLCRDGETGMEYAMKVMDKRKRGGIRSRQGQGGHQHLAETLRREVAVMKKLRHPNIVTLWEVIDDPKAQQLYMIQEYVADGPLLPEGVVVSPMDTEEARDKFLGCIRGLHHLHQHGVVHGDIKPQNLLVAKDGTVKIADFGAAVML 729          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A835YIE0_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIE0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 5.020e-41
Identity = 88/198 (44.44%), Postives = 115/198 (58.08%), Query Frame = 1
Query:   31 TTIIN-KYRVEKEVGKGSYGSVYSVVHVSTGVRYA---------MKVINKAKNGPRSDRLRESLQREVEVMKKLRHPNLVTLWEVIDDPR-----------------------------AQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVV 507
            T +IN KY + +E+G+GSYGSVY      TG+  A         +KV+NK + G R  ++ ESL+REV  +KK+RHPN+VTL EVI+DP+                              +KVYM+QEYME G +LP ++ V PL E+ A   FV A RGLHYLH H I HGDIKP+NLL    G +KI DFGA  ++
Sbjct:  769 TKVINRKYEMREEIGRGSYGSVYKCFDRETGMFKAIKASCDISVLKVLNKKQRGKRGTQMLESLRREVAALKKMRHPNIVTLLEVINDPKXXXXXXXXXXXXXXXXXXXXXXXGISDPKGEKVYMVQEYMELGTILPGSYQVTPLPEDEARQYFVHAVRGLHYLHMHGIIHGDIKPANLLLGADGTVKISDFGASKIL 966          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A482SUA7_9ARCH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUA7_9ARCH)

HSP 1 Score: 139 bits (349), Expect = 3.780e-36
Identity = 70/163 (42.94%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   22 ETKTTIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKAKNGPRSDRLRESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVVD 510
            E+ + +INKY VE+E+GKGS+G VY    + T   YAMK I++      +D    ++++E+ VMK+L+H N+V L EVIDD  A+K+++IQE+ME G ++ +  + EPL   +A   F    RG+ YLH   + H DIKP N+L + SG +KI DFGA    D
Sbjct:  159 ESGSRVINKYIVERELGKGSFGEVYLCRDIETNKEYAMKQISRPTTSSWNDESSNAIRQEIAVMKRLKHQNVVGLHEVIDDQNARKIFLIQEFMEGGPLMDDAETCEPLDPNLARKYFRDILRGVCYLHYEGVIHRDIKPQNMLLASSGTVKIADFGAAVFTD 321          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A024UTS4_9STRA (cGMP-dependent protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTS4_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.480e-34
Identity = 75/161 (46.58%), Postives = 104/161 (64.60%), Query Frame = 1
Query:   34 TIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKA---KNGPRSDRLRESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVV 507
            T++NKY ++ E+GKGS+G+V    +   G+ YA+K+++K    +   R D L+++L+REV +MKKL H N+V L EVIDDP +QKVY++QEY+EKG  L E     PL+EEVA         GL YLH H + H DIKP N+L +     KI DFGA  +V
Sbjct:  472 TVVNKYVIKGELGKGSFGTVKLCANEEDGLLYAVKIMHKTFVQRMANREDSLQDALRREVAIMKKLDHRNVVRLVEVIDDPSSQKVYLVQEYVEKGN-LAEVAGGAPLAEEVARKYLRDLLCGLQYLHFHKVVHRDIKPENILVTSDDVAKIADFGAARMV 631          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A3R6YD84_9STRA (cGMP-dependent protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YD84_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.630e-34
Identity = 75/161 (46.58%), Postives = 104/161 (64.60%), Query Frame = 1
Query:   34 TIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKA---KNGPRSDRLRESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVV 507
            T++NKY ++ E+GKGS+G+V    +   G+ YA+K+++K    +   R D L+++L+REV +MKKL H N+V L EVIDDP +QKVY++QEY+EKG  L E     PL+EEVA         GL YLH H + H DIKP N+L +     KI DFGA  +V
Sbjct: 1088 TVVNKYVIKGELGKGSFGTVKLCANEEDGLLYAVKIMHKTFVQRMANREDSLQDALRREVAIMKKLDHRNVVRLVEVIDDPSSQKVYLVQEYVEKGN-LAEVAGGAPLAEEVARKYLRDLLCGLQYLHFHKVVHRDIKPENILVTSDDVAKIADFGAARMV 1247          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A397F2H8_9STRA (Protein kinase domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F2H8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.340e-33
Identity = 73/161 (45.34%), Postives = 101/161 (62.73%), Query Frame = 1
Query:   34 TIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKA---KNGPRSDRLRESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVV 507
            T++NKY ++ E+GKGS+G+V    +   G  YA+K+++K    +   R D L+++L+REV +MKKL H N+V L EVIDDP +QKVY++QEY+EKG  L E     PL E +A         GL YLH H + H DIKP N+L +     KI DFGA  +V
Sbjct:   44 TVVNKYVIKGELGKGSFGTVKLCANEEDGQLYAVKIMHKTFVQRMANREDSLQDALRREVAIMKKLDHRNVVRLVEVIDDPSSQKVYLVQEYIEKGN-LAEVAGGAPLPEALARKYLRDMLCGLQYLHFHKVVHRDIKPENILVTSDDVAKIADFGAARMV 203          
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Match: A0A7S0PEW8_CAFRO (cGMP-dependent protein kinase (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PEW8_CAFRO)

HSP 1 Score: 134 bits (337), Expect = 4.020e-33
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 1
Query:   37 IINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINKAKNGPRSDRLR------ESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEYMEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNLLESQSGQIKIGDFGACFVVDENEGEG 528
            I+N Y ++ +VG+GSYG+V+  + V+   +YA+K++N+ K   +    R      E L  EV  MKKL HPNLV L+EVID+P+  K YM+QEYM  GA++ E    +PL  EVA A F Q   GL Y+H   + H D+KPSN L  + G  KI DFG   +V +   EG
Sbjct:  247 ILNDYVLQTKVGQGSYGTVWLAMAVTDAKKYAIKMVNREKLRRKGRFARGAGEGDEELLNEVAAMKKLSHPNLVKLYEVIDEPQRGKFYMVQEYMALGAIMDEVEYCDPLDPEVARAFFRQVVAGLAYMHFQGVIHRDLKPSNCLVGEGGVCKIADFGTVAIVGDEPQEG 416          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK08_ECTSI9.800e-5556.00cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5KED2_9PHAE4.590e-5455.43cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5LNX5_9PHAE6.690e-5256.29Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LIK7_ECTSI2.780e-4855.09cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835YIE0_9STRA5.020e-4144.44cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A482SUA7_9ARCH3.780e-3642.94Cyclic nucleotide-binding domain-containing protei... [more]
A0A024UTS4_9STRA6.480e-3446.58cGMP-dependent protein kinase n=2 Tax=Aphanomyces ... [more]
A0A3R6YD84_9STRA6.630e-3446.58cGMP-dependent protein kinase n=1 Tax=Aphanomyces ... [more]
A0A397F2H8_9STRA3.340e-3345.34Protein kinase domain-containing protein (Fragment... [more]
A0A7S0PEW8_CAFRO4.020e-3343.53cGMP-dependent protein kinase (Fragment) n=1 Tax=C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11456contigC-tenellus_contig11456:274..2543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FK08
PFAMsPP2C,Pkinase,cNMP_binding
Model size542
Max annot lvl2759|Eukaryota
KEGG koko:K07359
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.61e-55
EggNOG OGsKOG0585@1|root,KOG0585@2759|Eukaryota
EC2.7.11.17
Descriptionpeptidyl-threonine phosphorylation
Cds size540
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.1036072-CDS-C-tenellus_contig11456:273..4111680789179.1036072-CDS-C-tenellus_contig11456:273..411Choristocarpus tenellus KU2346CDSC-tenellus_contig11456 274..411 +
1680789179.1194277-CDS-C-tenellus_contig11456:636..7771680789179.1194277-CDS-C-tenellus_contig11456:636..777Choristocarpus tenellus KU2346CDSC-tenellus_contig11456 637..777 +
1680789179.12914-CDS-C-tenellus_contig11456:1023..11251680789179.12914-CDS-C-tenellus_contig11456:1023..1125Choristocarpus tenellus KU2346CDSC-tenellus_contig11456 1024..1125 +
1680789179.1378102-CDS-C-tenellus_contig11456:1507..15971680789179.1378102-CDS-C-tenellus_contig11456:1507..1597Choristocarpus tenellus KU2346CDSC-tenellus_contig11456 1508..1597 +
1680789179.151019-CDS-C-tenellus_contig11456:2474..25431680789179.151019-CDS-C-tenellus_contig11456:2474..2543Choristocarpus tenellus KU2346CDSC-tenellus_contig11456 2475..2543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11456.1.1prot_C-tenellus_contig11456.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11456 274..2543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11456.1.1

>prot_C-tenellus_contig11456.1.1 ID=prot_C-tenellus_contig11456.1.1|Name=mRNA_C-tenellus_contig11456.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=180bp
LVKEGDRETKTTIINKYRVEKEVGKGSYGSVYSVVHVSTGVRYAMKVINK
AKNGPRSDRLRESLQREVEVMKKLRHPNLVTLWEVIDDPRAQKVYMIQEY
MEKGAVLPENFSVEPLSEEVALAVFVQAARGLHYLHSHSICHGDIKPSNL
LESQSGQIKIGDFGACFVVDENEGEGEISE
back to top

mRNA from alignment at C-tenellus_contig11456:274..2543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11456.1.1 ID=mRNA_C-tenellus_contig11456.1.1|Name=mRNA_C-tenellus_contig11456.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2270bp|location=Sequence derived from alignment at C-tenellus_contig11456:274..2543+ (Choristocarpus tenellus KU2346)
CTAGTGAAGGAAGGTGATAGGGAGACCAAGACAACAATAATTAACAAGTA CCGTGTGGAGAAGGAGGTGGGCAAAGGGAGCTACGGCTCCGTGTACAGTG TTGTGCATGTCAGCACTGGTGTCAGATATGCCATGAAGGTGCGACCTGTT GACTCTCGAATTTTTCAGAAGACTCCTTGAACTCAACCGACAGATAGGAA ATGGATGAGGATTGGGAGTGGGGTAGGAGAGGGGGGAGCGTAAGCCTAGC TTGTTGAGTGCTGTTTTAATAACCATTGATGTCCATATTGGATCACATCG AGTGAGCAGTGCATGTATTAAACCTTGAATTTGCCTCCGTGGACAAATGA AACCTAAAAATAGGTGATCAATAAGGCCAAGAATGGACCTAGAAGTGACC GCCTTCGTGAGAGTCTCCAGAGGGAGGTGGAGGTGATGAAGAAGCTGCGG CACCCCAACTTAGTCACTCTATGGGAGGTGATAGATGATCCACGCGCACA AAAGGCACGTTCCTAAGCTCACAAATCCTGGAGAGGAGGATTTCGATTGA AAGACAGTGAAACTGCCCCACCAGAGTGGGTCAATATTTGAAATCCAATC TTTTTCTTCCTACGGTGCAATGACCATTCTGAGATGCTTACCCCTTCTAA TGTGGTAAGATATCTACATAATTAGTCATAGGCTGATCTCAATTAGTGTC AGGAAGGCAAACATACTCAAGGGCGCCTTCCTCTCATATCTTCTTTGTAG GTGTACATGATCCAAGAATACATGGAGAAAGGAGCCGTCCTTCCTGAGAA CTTTTCTGTCGAGCCTCTTTCAGAGGAGGTTGCATTGGCAGTCTTTGTTC AGGTGACAGCCCTTGCGTGATCCATTCGCAAGGGTGTTGTACGGGTATGT ATGCAACATAACGTTTCCCGATACTAAGACCATGTCACCACTAGCAGTAG TCCTCTCCCCACAGGCACCCTTCCAAAATACGCACATGTGTGAGAAATTC TAAGCACAAGCACTACCAATCAATAACTATGGACAAATTGAATTTGTTTC CACCAGTCAACAACTTCCTTTTCTCAGTCACATACTCTGAGGCAATGGCA TTTGCGTTACTTTTGCCCCTAGAATATGCTCAGGGTGATAGCGGATATCC TTACTCTTGAATGAAAATCTAGAGGGACTCACACATTCCACATAGCAACT CAGCAGCCTCCCGATCTCCTCAATTCATCTGTAGGCTGCTCGTGGTCTGC ACTACCTGCACTCACACAGCATCTGCCATGGTGACATAAAGCCTTCCAAT CTACTTGAGAGTCAGTCGGGACAGGTGGGAATGAAGGGGCGACAGGTGGG GTTCATATTGTCCTAAAATGCATTTTTAGTGCTGTAAGGTAGACTGGAAC AGCACAAAAAATAATTAGTCCCATAAGTGTATCGTCAGAAGCAAAATATC TTAACGTTAACCTCTAAGGCAGAGCCTTTGCATTAGTGCATACAATACAA AAAAAGTAATGTGATTAAGGTATGTATAACAATCCGAACTTCATGCTCCA CAAATATGTTTCTAAGAATATAACTTTCCGTCCCTTGTAGATTTTACGAA AGTTATTTTCAAGGTTGGAAAAAGGTCTTGCCTGTTTTCACATTTAGTCC ATTACTCGTGAATATAATGGGACCAAGTTGCGTATGCCCTAACATATAAA GTAACTGCAAATTTGCTGTATTTACCTCACCAAGCTTTTACATTATGAAC GTGTGGCATTTCTGCCCGGAGACATGTACATTATTTCAGCCTGCCTAATG TCATGGATTCTTCCATTAAATAGCCATCAGAATACACCTCAGTATGTCTG TCTTTGACCTCCAGCACAAAGTCAACACAACAGGACCTTTGCAACAGATC TGTGTAGCATTGGTTGTGCAGAAAATGCGATGAAAGATGTGATTTTACTC TTCCTATTCCCTCTTTTTTCATCTCCAACCTTGTCTAGAGCACTACTCCA TGCGCTTTGGTCATGAATTGTTCACTGCTTGAAGTCTATGCCATACTCTC TTCAAAGGTATGCTTATATCAAATCCCACCCATTCTTTTGGACGAAAATG TGAATATATATACGTTTTTCGAAATTGGATGTAGAATCTGGCATGTCACT TCCACCCCAATCAACTAGTGTTCTGATTCTCGTTGACCTCATATCCCAAA GATCAAGATTGGAGACTTCGGGGCCTGTTTTGTAGTGGATGAGAATGAAG GGGAGGGTGAAATATCTGAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11456:274..2543+

>mRNA_C-tenellus_contig11456.1.1 ID=mRNA_C-tenellus_contig11456.1.1|Name=mRNA_C-tenellus_contig11456.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=540bp|location=Sequence derived from alignment at C-tenellus_contig11456:274..2543+ (Choristocarpus tenellus KU2346)
CTAGTGAAGGAAGGTGATAGGGAGACCAAGACAACAATAATTAACAAGTA
CCGTGTGGAGAAGGAGGTGGGCAAAGGGAGCTACGGCTCCGTGTACAGTG
TTGTGCATGTCAGCACTGGTGTCAGATATGCCATGAAGGTGATCAATAAG
GCCAAGAATGGACCTAGAAGTGACCGCCTTCGTGAGAGTCTCCAGAGGGA
GGTGGAGGTGATGAAGAAGCTGCGGCACCCCAACTTAGTCACTCTATGGG
AGGTGATAGATGATCCACGCGCACAAAAGGTGTACATGATCCAAGAATAC
ATGGAGAAAGGAGCCGTCCTTCCTGAGAACTTTTCTGTCGAGCCTCTTTC
AGAGGAGGTTGCATTGGCAGTCTTTGTTCAGGCTGCTCGTGGTCTGCACT
ACCTGCACTCACACAGCATCTGCCATGGTGACATAAAGCCTTCCAATCTA
CTTGAGAGTCAGTCGGGACAGATCAAGATTGGAGACTTCGGGGCCTGTTT
TGTAGTGGATGAGAATGAAGGGGAGGGTGAAATATCTGAG
back to top