mRNA_C-tenellus_contig11445.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11445.1.1
Unique NamemRNA_C-tenellus_contig11445.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: D8LR38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR38_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.220e-61
Identity = 102/145 (70.34%), Postives = 120/145 (82.76%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERRVLFVDYDKQFYDLDDPENMFQFDRRHRHWLKKHGVIRQGVLWRKEELVRWFEGREAEGDPEAAEMKGRMMSWHASATR 435
            RC+ C +E T+  KD RQAKGIGFGEDPALVEAVERHR NE G+ FE++ QL+ VE+ERIRLEKERRV F +YD  FYDLDDPE M++ DRRHRHWLK+ GVIRQGVLWRKEEL+ WF+ R AEGD EA EMKG M++W+ +ATR
Sbjct: 1532 RCRDCGMEATRMHKDVRQAKGIGFGEDPALVEAVERHRANEGGFRFETSAQLKAVEDERIRLEKERRVCFAEYDHMFYDLDDPEMMYELDRRHRHWLKEKGVIRQGVLWRKEELLEWFDNRVAEGDTEATEMKGVMIAWYDNATR 1676          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A7S3HJF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJF4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.550e-24
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERRVLFVDYDKQFYDLDDPENMFQFDRRHRHWLKKHGVIRQGVLWRKEEL--------VRWFEGREAEGDPEA 387
            +C +C  E ++  K+  Q  G G G DPAL EAV+RHR+NE  + F+S+++L  VE+ERIRLEKERR +    +  FYD  D   ++ FDRRH   +KK G+ RQG+ W++EEL         R  E  E EG PEA
Sbjct:  493 KCTVCGKELSELHKEESQVLGYGSGADPALFEAVKRHRENEMTFRFKSSQELENVEQERIRLEKERREMETS-EAYFYDFQDLPVIYDFDRRHAVSIKKAGIFRQGLQWKEEELEFFELSKVTREKERLEKEGLPEA 628          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A835YM62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM62_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.690e-10
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  154 LRRVEEERIRLEKERRVLF--VDYDKQFYDLDDPENMFQFDRRHRHWLKKHGVIRQGVLWRKEELV 345
            L  VE ER+RLEKER  +    D D  FYDLDD   ++QFD RHR  LK+ GV+RQGVLW K+EL+
Sbjct: 2034 LAAVEAERLRLEKERFAMARGADADALFYDLDDASMVYQFDLRHRVNLKEAGVVRQGVLWEKDELL 2099          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A6G0WGR8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGR8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.480e-7
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERRVLFVDYDKQFYD 237
            RC+ C  E ++T ++   A+G     DP L   VE+HR NE+ +HFE+   L+RVE+ERIRLEKE R + ++ + Q YD
Sbjct: 1186 RCKQCGKEMSRTFEETDVARGA----DPQLDRDVEKHRLNESSFHFENAAHLKRVEDERIRLEKEAREIQLN-EVQSYD 1259          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A1V9Y827_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y827_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.370e-6
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERRVLFVDYDKQFYDLDDPENMFQFDRRH 279
            +C+ C  E ++      ++K    G DPAL + +E+HR+NE  + F S   L+ VE+ER+RLEKERR + +  + + YD    + + +F+ RH
Sbjct: 1159 KCKSCGAEVSKL----YESKDAARGTDPALDKDIEKHRENEASFRFTSAAHLKAVEDERLRLEKERREIDLS-EIRMYDAVHSKAIAEFNFRH 1246          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A485LNB1_9STRA (Aste57867_23364 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNB1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.500e-5
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERRVLFVDYDKQFYDLDDPENMFQFDRRH 279
            RC++C  E +    +   A+G     DPAL   VE+HR NE  + F +   L+RVE+ER+RLEKE R + +  + Q YD    + +  F+ RH
Sbjct:  995 RCKVCGKEVSHIFDEEDVARGA----DPALDRDVEKHRLNEVSFRFTNAAHLKRVEDERLRLEKEAREIQL-AEVQSYDSTHMKAIEAFNFRH 1082          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A3R8D9W3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R8D9W3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.640e-5
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERR 201
            +C+ C  E +++  D   A+G     DPAL   VE HR  E  + FE+ E LRRVE+ER+RLEKE R
Sbjct:  100 KCKQCGKEMSRSFDDVDAARGA----DPALDHDVEMHRLFEASFRFENAEHLRRVEDERVRLEKEAR 162          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A3L6VD64_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VD64_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.700e-5
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERR 201
            +C+ C  E +++  D   A+G     DPAL   VE HR  E  + FE+ E LRRVE+ER+RLEKE R
Sbjct:  389 KCKQCGKEMSRSFDDVDAARGA----DPALDHDVEMHRLFEASFRFENAEHLRRVEDERVRLEKEAR 451          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: W4GGS7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGS7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.780e-5
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERR 201
            +C+ C  E +++  D   A+G     DPAL   VE HR  E  + FE+ E LRRVE+ER+RLEKE R
Sbjct: 1191 KCKQCGKEMSRSFDDVDAARGA----DPALDHDVEMHRLFEASFRFENAEHLRRVEDERVRLEKEAR 1253          
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Match: A0A3R7BAK0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BAK0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.470e-5
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTEQLRRVEEERIRLEKERR 201
            +C+ C  E +++  D   A+G     DPAL   VE HR  E  + F++ E LRRVE+ER+RLEKE R
Sbjct:  710 KCKQCGKEMSRSFDDVDAARGA----DPALDRDVEMHRLFEASFRFDNAEHLRRVEDERVRLEKEAR 772          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LR38_ECTSI1.220e-6170.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3HJF4_9STRA1.550e-2445.26Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835YM62_9STRA1.690e-1057.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0WGR8_9STRA1.480e-744.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Y827_9STRA2.370e-635.48Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485LNB1_9STRA1.500e-537.63Aste57867_23364 protein n=1 Tax=Aphanomyces stella... [more]
A0A3R8D9W3_9STRA2.640e-546.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3L6VD64_9STRA2.700e-546.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GGS7_9STRA2.780e-546.27Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A3R7BAK0_9STRA6.470e-544.78Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11445contigC-tenellus_contig11445:304..1714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LR38
Model size438
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2e-62
EggNOG OGs2C4QV@1|root,2QVNB@2759|Eukaryota
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.8023632-CDS-C-tenellus_contig11445:303..3811680789178.8023632-CDS-C-tenellus_contig11445:303..381Choristocarpus tenellus KU2346CDSC-tenellus_contig11445 304..381 +
1680789178.8158293-CDS-C-tenellus_contig11445:729..8521680789178.8158293-CDS-C-tenellus_contig11445:729..852Choristocarpus tenellus KU2346CDSC-tenellus_contig11445 730..852 +
1680789178.8286376-CDS-C-tenellus_contig11445:1065..12231680789178.8286376-CDS-C-tenellus_contig11445:1065..1223Choristocarpus tenellus KU2346CDSC-tenellus_contig11445 1066..1223 +
1680789178.8442805-CDS-C-tenellus_contig11445:1635..17141680789178.8442805-CDS-C-tenellus_contig11445:1635..1714Choristocarpus tenellus KU2346CDSC-tenellus_contig11445 1636..1714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11445.1.1prot_C-tenellus_contig11445.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11445 304..1714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11445.1.1

>prot_C-tenellus_contig11445.1.1 ID=prot_C-tenellus_contig11445.1.1|Name=mRNA_C-tenellus_contig11445.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=146bp
RCQICSVETTQTDKDPRQAKGIGFGEDPALVEAVERHRKNENGYHFESTE
QLRRVEEERIRLEKERRVLFVDYDKQFYDLDDPENMFQFDRRHRHWLKKH
GVIRQGVLWRKEELVRWFEGREAEGDPEAAEMKGRMMSWHASATR*
back to top

mRNA from alignment at C-tenellus_contig11445:304..1714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11445.1.1 ID=mRNA_C-tenellus_contig11445.1.1|Name=mRNA_C-tenellus_contig11445.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1411bp|location=Sequence derived from alignment at C-tenellus_contig11445:304..1714+ (Choristocarpus tenellus KU2346)
AGGTGCCAAATATGCAGTGTTGAGACCACTCAGACGGATAAAGATCCCCG GCAGGCCAAGGGGATTGGGTTTGGCGAGGTAGGATCCTCCTATTTCTCAT TCTCATCAGCGTTTACACAAGATGATCCAATGCAGCCTTGGGATCCCTCA ACATTCAATATTCCCTTTTCATGTGCAATGCTAACCCTTGAATTGTCACC TCCTTTTTTCAATGAAAATGGTGAAATATGTTTGGAGTATAAATCTAATG TTCTGAAGTATCTTCTTGTATGTAGTATTCTAATTACCACTCCTACTAGA TACCATTGGGGTATGTAATTTAAGGGTGGGCAAGTGGAAGTGAAGGATAA GAAAGATGTTTGAGATGGACAGCAGGCATATTCAAGATCTAATATCCACC CAACATGCTGGATTTGAGAAAAACAGGATCCAGCCCTGGTTGAAGCAGTG GAAAGGCATAGAAAGAATGAGAATGGGTATCATTTCGAGAGCACAGAGCA GTTGAGGAGAGTTGAGGAGGAGAGGATTCGACTGGAAAAGGAGCGGAGGG TGAGTGACACCTAACCCGTAAGTTAGAGGGTGCAAGCATTACTGATTTGC AGAGTCAGTGTATATCACCATGTGCCAATACACTGCAGTAAAGTACAGTT GATTAGAGTAACCCCGATCAGAGCCTTCCTGTCTTGCAGCTATACATATC CTATGGCCTAGATGTAGCACTGCATGCATTTTTCTGACTTTGGCATCCTG CTGCTTTTCTAGGTTTTGTTTGTGGACTACGACAAACAGTTCTATGACCT GGACGACCCTGAGAATATGTTTCAGTTTGACCGACGGCATAGGCATTGGC TGAAGAAACATGGTGTCATCCGGCAGGGAGTGTTGTGGAGAAAGGAGGAG CTAGTACGTTGGTTTGAGGGGTAGGTCCTGCAGCACATACCATTAGCCAG TTACGCCGCATATTTGGTTGATCAATACTCCAGACTAGAACCAACAAGTT TTGAGTGGACATTAACTCTTCTTCAGTCATGATACTTGAAGATGTTCTTG GTTGGTTCTTCCAGTAATGCTGTACAGAGGGCATGCTTGCAGTATGTGTC ATGAGTACTGGTTGCCATGGTACGAAAATCGATCGGAGATGAAGTAATCA GTTCAGAATACAGTTTCCACCATGAAAGTTCAAGGCTATGTATGCCAAGG TTTCCAGAGAAGTCCAATGCAGAGGAGTCCACATCATGGTACAGTTGTTG GCACCCTTTGGTACTCTTGAATGTTCAATCAAGATTACAAGTTAATGCCA TATACCCTTGTGAACGTTGTCCCCAAACTTAGCCGAGAAGCAGAAGGTGA CCCTGAGGCGGCTGAAATGAAAGGAAGAATGATGAGTTGGCATGCCAGTG CTACAAGGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11445:304..1714+

>mRNA_C-tenellus_contig11445.1.1 ID=mRNA_C-tenellus_contig11445.1.1|Name=mRNA_C-tenellus_contig11445.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=438bp|location=Sequence derived from alignment at C-tenellus_contig11445:304..1714+ (Choristocarpus tenellus KU2346)
AGGTGCCAAATATGCAGTGTTGAGACCACTCAGACGGATAAAGATCCCCG
GCAGGCCAAGGGGATTGGGTTTGGCGAGGATCCAGCCCTGGTTGAAGCAG
TGGAAAGGCATAGAAAGAATGAGAATGGGTATCATTTCGAGAGCACAGAG
CAGTTGAGGAGAGTTGAGGAGGAGAGGATTCGACTGGAAAAGGAGCGGAG
GGTTTTGTTTGTGGACTACGACAAACAGTTCTATGACCTGGACGACCCTG
AGAATATGTTTCAGTTTGACCGACGGCATAGGCATTGGCTGAAGAAACAT
GGTGTCATCCGGCAGGGAGTGTTGTGGAGAAAGGAGGAGCTAGTACGTTG
GTTTGAGGGCCGAGAAGCAGAAGGTGACCCTGAGGCGGCTGAAATGAAAG
GAAGAATGATGAGTTGGCATGCCAGTGCTACAAGGTGA
back to top