mRNA_C-tenellus_contig11438.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11438.3.1
Unique NamemRNA_C-tenellus_contig11438.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A6H5KWG9_9PHAE (ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG9_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 9.550e-51
Identity = 90/126 (71.43%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRFP--FSTVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIKSSV 372
            +YGL SS+FS + +RAVR+GEAIRCGMTNVNDFGVNYLVQ+LPFGGVKDSG GRFAGPEGLR+CCLLKSVTVDRFP    TVVPAPL YPVA+S   FA S+T   Y  SL DK+  V+ L+++SV
Sbjct:  481 KYGLASSVFSGSSTRAVRLGEAIRCGMTNVNDFGVNYLVQSLPFGGVKDSGYGRFAGPEGLRACCLLKSVTVDRFPKIMGTVVPAPLQYPVAKSGARFAASMTRMFYCDSLADKLWAVVQLVRASV 606          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A7S0CAP3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAP3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.830e-38
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    4 YGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRFP-FSTVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIKSS 369
            +GLGSS++S NK RAV IG  I+ GM   NDFGVNYL+Q+LPFGGVK+SG  RFAGPEGLR+CC+ +S+ VDR P   T +P P+ YPV +    F  SL +  Y  S++ K K ++ LIK+S
Sbjct:  129 FGLGSSVYSGNKKRAVAIGSRIKSGMFTANDFGVNYLIQSLPFGGVKESGFDRFAGPEGLRACCMERSIVVDRIPGVKTSIPPPIDYPVGKKGLPFGTSLVNLFYNQSVIGKAKAILGLIKNS 251          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A7S2XYE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.030e-37
Identity = 70/122 (57.38%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRFPFS-TVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            +YGLGSS+FS ++ RA +IG  IR GMT VNDFGVNYLVQ+LPFGGVKDSG  RFAGPEGLR+CCL+KSV VD+F F  T +P  L YPV  ++  FA+S+   +Y  +++ +I+ +I ++K
Sbjct:  495 KYGLGSSVFSKSQPRAEKIGNRIRAGMTTVNDFGVNYLVQSLPFGGVKDSGFDRFAGPEGLRACCLMKSVVVDKFSFCRTSIPKVLQYPVGPTALDFAKSMIGIMYSPTILGRIQSIIGIMK 616          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A4S8J1S1_MUSBA (Aldedh domain-containing protein n=5 Tax=Zingiberales TaxID=4618 RepID=A0A4S8J1S1_MUSBA)

HSP 1 Score: 137 bits (345), Expect = 2.170e-35
Identity = 64/123 (52.03%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRF-PF-STVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            +YGLG ++FS N+ RA+ I   + CG+  +NDF   Y+ Q+LPFGGVK SG GRFAG EGLR+CCL+KSV VDR+ PF  TV+P P+ YPVAE++ +F ESL   +YG+++ D+++ +I+++K
Sbjct:  456 KYGLGCAVFSGNQKRAIAIASQLHCGVAAINDFASTYMCQSLPFGGVKHSGFGRFAGVEGLRACCLVKSVVVDRWWPFIKTVIPKPIQYPVAENAFVFQESLVEALYGLNVWDRLRSLINVVK 578          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A445IWD2_GLYSO (Aldehyde dehydrogenase 22A1 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445IWD2_GLYSO)

HSP 1 Score: 131 bits (330), Expect = 2.710e-35
Identity = 64/123 (52.03%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRF-PF-STVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            +YGLG ++FS ++SRA  I   I CG+  VNDF   Y+ Q+LPFGGVK+SG GRF G EGLR+CCL+KSV  DR+ PF  TV+P P+ YPVAE+   F ESL   +YG+S+ D+++ +++++K
Sbjct:  138 KYGLGCNVFSGSQSRAREIASQIHCGLAAVNDFASTYMCQSLPFGGVKNSGFGRFGGVEGLRACCLVKSVVEDRWWPFIKTVIPKPIQYPVAENGFEFQESLVEALYGLSVWDRLQALVNVLK 260          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A0E0API9_9ORYZ (Aldedh domain-containing protein n=1 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0E0API9_9ORYZ)

HSP 1 Score: 134 bits (336), Expect = 3.270e-35
Identity = 61/123 (49.59%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRF-PF-STVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            +YGLG ++FS N+ RA++I   + CG+  +NDF  +Y+ Q+LPFGGVKDSG GRFAG EGLR+CCL+K+V  DR+ P+  T++P P+ YPV+E+   F E L  T+YG+S+ D+++ +++L+K
Sbjct:  246 KYGLGCAVFSGNQKRAIKIASQLHCGVAAINDFASSYMCQSLPFGGVKDSGFGRFAGVEGLRACCLVKAVVEDRWWPYVKTMIPKPIQYPVSENGFEFQELLVETLYGLSVWDRLRSLVNLLK 368          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A7N2LWX2_QUELO (Aldedh domain-containing protein n=4 Tax=Fagaceae TaxID=3503 RepID=A0A7N2LWX2_QUELO)

HSP 1 Score: 135 bits (341), Expect = 7.980e-35
Identity = 67/123 (54.47%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRF-PF-STVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            RYGLG ++FS ++ RA +I   I CG+  +NDF  NYL Q+LPFGGVKDSG GRFAG EGLR+CCL+KSV  DR+ PF  T +P P+ YPVAE+S  F ESL    YG+ + D+++ ++++IK
Sbjct:  458 RYGLGCAVFSGSQHRAKKIASQIHCGVVAINDFASNYLCQSLPFGGVKDSGFGRFAGVEGLRACCLVKSVVEDRWWPFIKTKIPKPIQYPVAENSFEFQESLVELFYGLDIWDRLRALVNVIK 580          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A6P4CZI7_ARADU (Aldehyde dehydrogenase n=4 Tax=Arachis TaxID=3817 RepID=A0A6P4CZI7_ARADU)

HSP 1 Score: 134 bits (338), Expect = 1.240e-34
Identity = 66/123 (53.66%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRF-PF-STVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            RYGLG ++FS N+S A  I   I CG   VNDF   Y+ Q+LPFGGVK SG GRF G EGLR+CCL+K+V  DR+ P+  TV+P P+ YPVAES+  F ESL   +YG+S+ D++K ++S++K
Sbjct:  395 RYGLGCAVFSGNQSHAREIASQIHCGFAAVNDFAATYMCQSLPFGGVKHSGFGRFGGAEGLRACCLVKAVVEDRWWPYIKTVIPKPIQYPVAESAFEFQESLVEALYGLSIWDRLKALVSVLK 517          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: A0A2P2MR70_RHIMU (Aldehyde dehydrogenase n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MR70_RHIMU)

HSP 1 Score: 126 bits (317), Expect = 1.310e-34
Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRF--PFSTVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            R+GLG ++FS ++ RA  I   I CG   +NDF  +Y+ Q+LPFGGVKDSG GR  G EGLR CCL+KSV  DR+     T++P P+ YPVAE+   F ESL   +YG+S+ D++  +++++K
Sbjct:   27 RFGLGCNVFSGSQQRAKEIASQIHCGNAAINDFATSYMCQSLPFGGVKDSGFGRLGGVEGLRDCCLVKSVVEDRWWPHIKTIIPKPIQYPVAENGFTFEESLVKALYGLSIGDRLGALVNVLK 149          
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Match: AL221_ARATH (Aldehyde dehydrogenase 22A1 n=31 Tax=Brassicaceae TaxID=3700 RepID=AL221_ARATH)

HSP 1 Score: 134 bits (337), Expect = 2.920e-34
Identity = 64/123 (52.03%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDSGSGRFAGPEGLRSCCLLKSVTVDRF--PFSTVVPAPLLYPVAESSTLFAESLTSTVYGVSLVDKIKGVISLIK 363
            RY LG ++FS +K RA +I   I+CG+  +NDF  NY+ Q+LPFGGVKDSG GRFAG EGLR+CCL+KSV  DRF     T +P P+ YPVAE++  F E+L  T+YG+++ D+++ +I ++K
Sbjct:  458 RYALGCAVFSGSKHRAKQIASQIQCGVAAINDFASNYMCQSLPFGGVKDSGFGRFAGIEGLRACCLVKSVVEDRFWPLIKTKIPKPIQYPVAENAFEFQEALVETLYGLNIWDRLRSLIDVLK 580          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11438.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWG9_9PHAE9.550e-5171.43ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S0CAP3_9STRA2.830e-3854.47Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2XYE7_9STRA2.030e-3757.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4S8J1S1_MUSBA2.170e-3552.03Aldedh domain-containing protein n=5 Tax=Zingibera... [more]
A0A445IWD2_GLYSO2.710e-3552.03Aldehyde dehydrogenase 22A1 n=1 Tax=Glycine soja T... [more]
A0A0E0API9_9ORYZ3.270e-3549.59Aldedh domain-containing protein n=1 Tax=Oryza glu... [more]
A0A7N2LWX2_QUELO7.980e-3554.47Aldedh domain-containing protein n=4 Tax=Fagaceae ... [more]
A0A6P4CZI7_ARADU1.240e-3453.66Aldehyde dehydrogenase n=4 Tax=Arachis TaxID=3817 ... [more]
A0A2P2MR70_RHIMU1.310e-3447.97Aldehyde dehydrogenase n=2 Tax=Rhizophora mucronat... [more]
AL221_ARATH2.920e-3452.03Aldehyde dehydrogenase 22A1 n=31 Tax=Brassicaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11438contigC-tenellus_contig11438:4160..5154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4641.GSMUA_Achr11P05080_001
PFAMsAldedh
Model size384
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0008150,GO:0008152,GO:0012505,GO:0016491,GO:0016620,GO:0016903,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Exons3
Evalue3.56e-36
EggNOG OGsCOG1012@1|root,KOG2454@2759|Eukaryota,37KDF@33090|Viridiplantae,3G9K5@35493|Streptophyta,3KQTV@4447|Liliopsida
DescriptionBelongs to the aldehyde dehydrogenase family
Cds size384
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.5249343-CDS-C-tenellus_contig11438:4159..42851680789178.5249343-CDS-C-tenellus_contig11438:4159..4285Choristocarpus tenellus KU2346CDSC-tenellus_contig11438 4160..4285 -
1680789178.538669-CDS-C-tenellus_contig11438:4416..45541680789178.538669-CDS-C-tenellus_contig11438:4416..4554Choristocarpus tenellus KU2346CDSC-tenellus_contig11438 4417..4554 -
1680789178.5491872-CDS-C-tenellus_contig11438:5034..51541680789178.5491872-CDS-C-tenellus_contig11438:5034..5154Choristocarpus tenellus KU2346CDSC-tenellus_contig11438 5035..5154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11438.3.1prot_C-tenellus_contig11438.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11438 4160..5154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11438.3.1

>prot_C-tenellus_contig11438.3.1 ID=prot_C-tenellus_contig11438.3.1|Name=mRNA_C-tenellus_contig11438.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=128bp
RYGLGSSIFSANKSRAVRIGEAIRCGMTNVNDFGVNYLVQNLPFGGVKDS
GSGRFAGPEGLRSCCLLKSVTVDRFPFSTVVPAPLLYPVAESSTLFAESL
TSTVYGVSLVDKIKGVISLIKSSVSSS*
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mRNA from alignment at C-tenellus_contig11438:4160..5154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11438.3.1 ID=mRNA_C-tenellus_contig11438.3.1|Name=mRNA_C-tenellus_contig11438.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=995bp|location=Sequence derived from alignment at C-tenellus_contig11438:4160..5154- (Choristocarpus tenellus KU2346)
AGATATGGTCTTGGCAGTTCTATCTTTTCTGCAAACAAGAGTAGGGCTGT GCGAATTGGGGAGGCTATTCGTTGTGGGATGACTAACGTCAATGACTTTG GTGTCAACTACTTGGTGCAGGTGCCGTGTGATGAACTCTTTCAATGCTAT TTTACTATTTATTAATATTTGCGAGTGGTGTAGTGATTGCAGAGTCTGCT TTTGATTTTGCCCGTTTGACTGCCTTGTAATACATTTAGGCAACTCGAAA TTTATGCAATTTTCTGATTCCTCAGATATTTTGTATCACTGAGGTGTATG ATACTGTAAGTAAAGAATATACTGTTGTTATAGTGATATTTTTATTTGAT ACTTTGGTACACATTTTGTTTTATTGTGAGTTGACAGAGGCAAGCTGATC GGGGGCTTTGGTCCTGAACACCACAGGCTTTAGTGCTAGAGCTTCTGTCT TCATGTTACCCACATATGTCTCCCTCATTGAAGTTCCAACAATTGGAGGT CATTCCTTTGTATCACTTAGAAAGGCGGTTGTTTGGCCCTTGAATTTCTT ATCAATCTCTGTGACATGCCTTTGGACTCCCCCTTCATTTTGTTTGGCAG AATCTTCCCTTTGGAGGCGTGAAAGATTCTGGTTCAGGACGCTTTGCAGG GCCGGAGGGGCTTCGATCATGCTGCCTGTTGAAGTCTGTGACTGTGGACA GGTTCCCCTTCAGCACAGTTGTACCAGCTCCTCTACTGGTGAGTAAGAAA AAAGTCCGGAGATGAGGGGAGGGGGAAGCTATTATCCTCTGACTGGTCGA TTTTATGACATTATGAAAAATTAACACTAAATGTTGCCCCCATCCCCCCT CCCTTTTTTTCCCTGTCAGTACCCTGTTGCTGAATCAAGTACACTGTTTG CTGAGAGCTTAACAAGTACAGTCTACGGGGTCTCCTTGGTAGACAAGATC AAGGGTGTCATCAGTTTGATAAAGTCATCTGTCTCATCATCATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11438:4160..5154-

>mRNA_C-tenellus_contig11438.3.1 ID=mRNA_C-tenellus_contig11438.3.1|Name=mRNA_C-tenellus_contig11438.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=384bp|location=Sequence derived from alignment at C-tenellus_contig11438:4160..5154- (Choristocarpus tenellus KU2346)
AGATATGGTCTTGGCAGTTCTATCTTTTCTGCAAACAAGAGTAGGGCTGT
GCGAATTGGGGAGGCTATTCGTTGTGGGATGACTAACGTCAATGACTTTG
GTGTCAACTACTTGGTGCAGAATCTTCCCTTTGGAGGCGTGAAAGATTCT
GGTTCAGGACGCTTTGCAGGGCCGGAGGGGCTTCGATCATGCTGCCTGTT
GAAGTCTGTGACTGTGGACAGGTTCCCCTTCAGCACAGTTGTACCAGCTC
CTCTACTGTACCCTGTTGCTGAATCAAGTACACTGTTTGCTGAGAGCTTA
ACAAGTACAGTCTACGGGGTCTCCTTGGTAGACAAGATCAAGGGTGTCAT
CAGTTTGATAAAGTCATCTGTCTCATCATCATGA
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