mRNA_C-tenellus_contig11372.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11372.2.1
Unique NamemRNA_C-tenellus_contig11372.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: D7FZ57_ECTSI (Plastid-lipid associated protein PAP / fibrillin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ57_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 5.010e-25
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 KTQLLEAVQCTGRGVSTSTEQREEIDRLITALEAVNPTPNSGSSSLLSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGGSFFSVGSSI 318
            K +LL+ V+ T RG+STS EQR++ID LI A+E  NP   S +S  LSARW L WT+ERE++FL+E+G  G  +G V Q IDV+  TL N ++F   S F V SSI
Sbjct:   99 KQRLLDTVRDTKRGISTSEEQRKDIDELIAAIEPFNPNAKSVTSESLSARWILEWTTEREIIFLMERGLPGKPSGPVEQDIDVDARTLSNRMIFGDDSLFEVASSI 204          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: A0A7S0M3X5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M3X5_9CRYP)

HSP 1 Score: 88.6 bits (218), Expect = 5.090e-20
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   64 REEIDRLITALEAVNPTPNSGSSSLLSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGGSFFSVGSS 315
            ++  + LI AL   NPTP++ SS L++ RW++RWT+E+E+LFL+EKGFFG     V+Q ID   GTL N L+FE  S+  V S+
Sbjct:   57 KQRFEELIEALVDQNPTPDAASSPLMTGRWEMRWTTEKEILFLVEKGFFGQKCLSVYQDIDSAAGTLANALVFENDSYLKVQST 140          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: A0A7S3XXJ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXJ7_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 6.550e-17
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 KTQLLEAVQCTGRGVSTSTEQREEIDRLITALEAVNPTPNSGSSSL---LSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGGSFFSVGSS 315
            K QLL+ V+ + RG+ T+ E +E I+  I  LEA+NP   +        L+ RW L WT+E+EVLF+ EKGFFGL    ++Q ID     L+N + F   S+FSV SS
Sbjct:   80 KAQLLKVVEDSQRGLLTTPEDQELINDYIAKLEALNPAAKADPEEYRRTLNKRWRLTWTTEQEVLFIAEKGFFGLPVMDIYQDIDTVNNRLQNMIEFPQDSYFSVMSS 187          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: A0A7S2I5Q3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I5Q3_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 4.260e-12
Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 1
Query:    1 KTQLLEAVQCTGRGVSTSTEQREEIDRLITALEAVNPTPNSGSSSLLSARWDLRWTSEREVLFLIEKGFFGL---DTGVVFQAIDVEQGT-LENTLLFEGGSFFSVGSS 315
            K +LL   +   RG       +  +   + AL  +NPTPN  SS LL   W++ WT+E E+LFL EKGFFGL    T       D   G  L NT+ F+GG F  VGSS
Sbjct:  289 KKELLALCRGLERGARGDEADKARVAAAMEALATLNPTPNPASSLLLQGTWEVVWTTESELLFLTEKGFFGLPCLSTSQTIAPADTATGLELRNTVDFDGG-FLRVGSS 396          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: A0A7S0JMC5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JMC5_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 2.920e-11
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   40 GVSTSTEQREEIDRLITALEAVNPTPNSGSSSLLSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAI-------DVEQGTLE--NTLLFEGGSFFSVGSS 315
            G ++ +EQR  I   I  L AVNPTP+  +SSLL  +W++ WT+E E+L L+ KG  GL      Q I       D  Q  LE  N + FEGGS  +V S+
Sbjct:   59 GAASDSEQRAAIASQIDELAAVNPTPSPAASSLLRGKWEVVWTTESELLLLVNKGLPGLPGEGASQIIRFAEADDDASQRPLELLNCVQFEGGSALTVTST 159          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: A0A7S0HLR2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLR2_9CRYP)

HSP 1 Score: 67.0 bits (162), Expect = 7.850e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   34 GRGVST-STEQREEIDRLITALEAVNPTPNSGSSSLLSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGGS-FFSVGSS 315
            G+G+ T   E+   +  ++  LEA         S  +  RW++ WT+E+E+LFL+EKG FGL    V+Q I++E+G+L N + FE G     VGSS
Sbjct:   92 GKGLQTLPQEESARMKDIMDELEANFSVEKPAESPYMQGRWNMLWTTEKEILFLVEKGLFGLACTGVWQEINLEEGSLTNIIDFEEGKGMLKVGSS 187          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: L1JCV5_GUITC (PAP_fibrillin domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCV5_GUITC)

HSP 1 Score: 62.8 bits (151), Expect = 9.160e-10
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 KTQLLEAVQCTGRGVST-STEQREEIDRLITALEAVNPTPNSGSSSLLSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGG 291
            K +L    Q   +G+S  +TE  + +  ++  LE+         S  +  RW++ WT+E+E+LFL+EKG FGL    V+Q I++++ +L N + FE G
Sbjct:  101 KAELRAICQRARKGLSELTTEDSQRMQEIMAKLESKFSIEKPAESLFMQGRWNMLWTTEKEILFLVEKGLFGLQCTGVWQDINLQEASLTNIIDFEMG 198          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: A0A7S3XCP0_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XCP0_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 5.400e-9
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 KTQLLEAVQCTGRGVSTSTEQREEIDRLITALEAVNPTPNSGSSSLLSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGGSFFSVGSSI 318
            K +LL  +Q T RG+    +++EEI R    L  +     + +  +LSA+W L WT+E+E LF+ EK       G  +Q IDV++ TL+N + F     F+V S I
Sbjct:   52 KRELLRLIQGTKRGLVE--DRKEEIRRCAMELGDLASGSTNTAEEVLSAKWKLLWTTEKETLFIFEKF---ASAGEAYQVIDVQEATLQNIIEFPPEGAFTVESKI 152          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: A0A7S2RAR6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAR6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.840e-9
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    1 KTQLLEAVQCTGRGVSTSTEQREEIDRLITALEAVNPTPNS---GSSSLLSARWDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGGSFFSVGSSI 318
            K ++L   + T RGV+ + EQ++ +D L+ AL A  P        S   +S RWDLR+T+E E+L L+     G    +V Q +DV    LEN + +E G  F V S++
Sbjct:   92 KEEILNLAEETNRGVTATVEQKQAMDALVDALLAATPDGEKRGLASDPRISTRWDLRYTTEAELLVLM-----GSRATLVTQVLDVPGAGLENLVQWENGVEFLVDSTL 195          
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Match: C1MVG1_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVG1_MICPC)

HSP 1 Score: 60.5 bits (145), Expect = 1.010e-8
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 KTQLLEAVQCTGRGVSTSTEQREEIDRLITALEAVNPTPNSGSS---SLLSARWDLRWTSEREVLFLI-EKGFFGLDTGVVFQAIDVEQGTLEN 270
            K+QL++AV  T RG++ S   R  I+ LI  LEA NPTP+  ++   + L+  W + +TS  E+L L+  +   G+  G + Q IDV  GT+EN
Sbjct:    4 KSQLMDAVAGTKRGLAASGAARARINELIATLEASNPTPSPATADGAAGLAGEWKIAYTSASELLLLLASENLPGVTIGDITQTIDVVAGTVEN 97          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11372.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ57_ECTSI5.010e-2551.89Plastid-lipid associated protein PAP / fibrillin f... [more]
A0A7S0M3X5_9CRYP5.090e-2048.81Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3XXJ7_HETAK6.550e-1743.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2I5Q3_9EUKA4.260e-1241.28Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0JMC5_9EUKA2.920e-1141.58Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0HLR2_9CRYP7.850e-1138.54Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JCV5_GUITC9.160e-1033.67PAP_fibrillin domain-containing protein n=1 Tax=Gu... [more]
A0A7S3XCP0_9CHLO5.400e-935.85Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S2RAR6_9STRA8.840e-935.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
C1MVG1_MICPC1.010e-839.36Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11372contigC-tenellus_contig11372:1106..2282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZ57
PFAMsPAP_fibrillin
Model size318
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.22e-26
EggNOG OGs2CNCY@1|root,2QVAR@2759|Eukaryota
DescriptionPAP_fibrillin
Cds size318
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789175.4566152-CDS-C-tenellus_contig11372:1105..13201680789175.4566152-CDS-C-tenellus_contig11372:1105..1320Choristocarpus tenellus KU2346CDSC-tenellus_contig11372 1106..1320 -
1680789175.46929-CDS-C-tenellus_contig11372:2179..22821680789175.46929-CDS-C-tenellus_contig11372:2179..2282Choristocarpus tenellus KU2346CDSC-tenellus_contig11372 2180..2282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11372.2.1prot_C-tenellus_contig11372.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11372 1106..2282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11372.2.1

>prot_C-tenellus_contig11372.2.1 ID=prot_C-tenellus_contig11372.2.1|Name=mRNA_C-tenellus_contig11372.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
KTQLLEAVQCTGRGVSTSTEQREEIDRLITALEAVNPTPNSGSSSLLSAR
WDLRWTSEREVLFLIEKGFFGLDTGVVFQAIDVEQGTLENTLLFEGGSFF
SVGSSI
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mRNA from alignment at C-tenellus_contig11372:1106..2282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11372.2.1 ID=mRNA_C-tenellus_contig11372.2.1|Name=mRNA_C-tenellus_contig11372.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1177bp|location=Sequence derived from alignment at C-tenellus_contig11372:1106..2282- (Choristocarpus tenellus KU2346)
AAAACGCAGCTTCTGGAGGCTGTGCAGTGTACGGGACGGGGGGTATCAAC CAGTACGGAGCAGCGGGAAGAAATAGATAGACTCATCACAGCCCTGGAGG CCGGTAAGAGGTTAACCTTGCCCCGTATAATGGATCAGTGTAGCTTCACT AGATGACATGTGCAAAGAGTCAGTTGAAGTGACATACTCAATCGTGGCAA TGGTGGTATGTCCTGGAGGGAACTATGGATTCATCAACCGCGTGACTTTG TCTGCATGCATGTTCGATCTCCCTCGCTTTCATAGCCTACCCTACCTGTA ACGCTATACCTCATCTTAGAGAGCATGACGCTGATGTGGCAGGGATCTCG GGAGTCATTCACTGTTGTGGGCAAAGCCCTATGTGGGGCAGTAGTATCAA ACGTGACCTCAAGTTGAGCATTCACGACCATAGCAATTATTGTGTAACTT GAAAATAGCACCTTGCTGCCATATGAAATACGATGTTATCCACAGATCTC TTTAATAAATTTGTCGTGTTTACACAGTACTCCAACCCTCCTCCACCCAC ATACTTGATCATAACAAGATGTCAACTCTTTCGAGGTGTAGTCACGCCAC GGCAAACAGATGTGCATGTGCTGCTCAACTAGTTTTCCTTTCCCCACCCA CAACTTTTGTTTTGTGGCACAATATCCACAGGCTCCTCTCACAAGTGTCC CCCTACCCCCATTCTGAACAGTCACACCCTCCATCAAGGTCCATCAAAAC CAGAGGCATGTACCCCCTGACCCAAATGCCTAGCTTTTTATTGTCACAAC ACAGCACAACCCTATAGCAATATCCACAATATGCTCACCTCTTCCGAACA TTTTCTCCCTATAATTTCATTTGTTTGATTCAACCTTGACCGTCTTTGCT GTTGTGTTGTAGCCCAATCCCACACCATTATTATCCTACCTCTTTTTGTG CCTCACATGCAGTGAACCCAACACCAAACTCCGGATCCAGCTCCCTGCTG AGTGCTCGGTGGGATCTACGATGGACCTCTGAACGTGAGGTCTTATTCCT CATTGAAAAGGGATTCTTCGGCCTGGACACAGGGGTTGTATTCCAGGCTA TTGATGTGGAGCAGGGCACGCTGGAGAACACATTGCTCTTTGAGGGCGGA TCCTTCTTCAGTGTGGGTTCATCAATC
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Coding sequence (CDS) from alignment at C-tenellus_contig11372:1106..2282-

>mRNA_C-tenellus_contig11372.2.1 ID=mRNA_C-tenellus_contig11372.2.1|Name=mRNA_C-tenellus_contig11372.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig11372:1106..2282- (Choristocarpus tenellus KU2346)
AAAACGCAGCTTCTGGAGGCTGTGCAGTGTACGGGACGGGGGGTATCAAC
CAGTACGGAGCAGCGGGAAGAAATAGATAGACTCATCACAGCCCTGGAGG
CCGTGAACCCAACACCAAACTCCGGATCCAGCTCCCTGCTGAGTGCTCGG
TGGGATCTACGATGGACCTCTGAACGTGAGGTCTTATTCCTCATTGAAAA
GGGATTCTTCGGCCTGGACACAGGGGTTGTATTCCAGGCTATTGATGTGG
AGCAGGGCACGCTGGAGAACACATTGCTCTTTGAGGGCGGATCCTTCTTC
AGTGTGGGTTCATCAATC
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