mRNA_C-tenellus_contig11327.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11327.1.1
Unique NamemRNA_C-tenellus_contig11327.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-10
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 2
Query:    2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWV--IWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVE 310
            PHT       L G GK EG+  +++  QP+ SP+LN+ DL FFRSLKC    + E F SVEEM+++I++ YEE     L+R        Y  +L++ G ND S E
Sbjct:   41 PHTAA--ETWLKGQGKKEGFD-LKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAF-SVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQE 141          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 65.5 bits (158), Expect = 8.230e-10
Identity = 36/104 (34.62%), Postives = 61/104 (58.65%), Query Frame = 2
Query:    2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEH 313
            PH    N+E +  A K +G+  IRL+ QP NSP+LN++DL FFRS++     +   ++EE+V  +K+ ++EY    L R    +     +++++KG ND  + H
Sbjct:  226 PHIDCNNAEFMQAASK-DGFD-IRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPH 327          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI001D0257F7 (uncharacterized protein LOC123043747 n=2 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0257F7)

HSP 1 Score: 64.7 bits (156), Expect = 1.860e-9
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 2
Query:   68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEE 331
            I+L+ QP NSP+LNI+DLCFFRSL+         S+ E++  +++ Y+ YD  TL R+         +++R KGG    + H + + +
Sbjct:  500 IKLIQQPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFVTLQSCMREIMREKGGIGYKIPHMQKERQ 587          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI001D0245D6 (uncharacterized protein LOC123072166 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0245D6)

HSP 1 Score: 64.3 bits (155), Expect = 2.340e-9
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTE 319
            I+L+ QP NSP+LNI+DLCFFRSL+         S+ E++  +++ Y+ YD  TL R+         +++R KGG    + H +
Sbjct:  231 IKLIQQPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFVTLQSCMREIMREKGGIGYKIPHMQ 314          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.250e-9
Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = 2
Query:    2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGS--VEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEG 322
            PHT  G  + +     TEGW  I +V Q + SP+LN+MDL  F SLK  VI    G+  ++E+++ ++  Y++Y   TL++    +   + +++R  G N     H  G
Sbjct:   24 PHTAGGLEDEVHATASTEGWH-ITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGG 131          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0008452092 (uncharacterized protein LOC123046124 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI0008452092)

HSP 1 Score: 63.5 bits (153), Expect = 4.250e-9
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 2
Query:   68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEE 331
            I+L+  P NSP+LNI+DLCFFRSL+         S+ E++  +++ Y+ YD  TL R+         +++R KGG    + H + + +
Sbjct:  148 IKLIQHPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFMTLQSCMREIMREKGGIGYKIPHMQKERQ 235          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0007EFBF42 (uncharacterized protein LOC108207092 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFBF42)

HSP 1 Score: 62.0 bits (149), Expect = 1.540e-8
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 2
Query:   74 LVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEEAV 337
            LV QP NSP+LNI+DL FFRS++  +  +    V++M+  + + Y E D TTL         + N+VL+ KG ND  V H   K+ A 
Sbjct:  386 LVQQPPNSPDLNILDLGFFRSIQSLMHKKMPKDVDDMMEAVHEAYFELDATTLGNVWLSYQYIMNEVLKVKGSNDYLVPHVNKKKLAA 473          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: A0A484NGQ5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484NGQ5_9ASTE)

HSP 1 Score: 61.6 bits (148), Expect = 1.770e-8
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 2
Query:    2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKE 328
            PH    + E +S +   EG W I+L  QP NSP+LN++DL FFRS+          S+ E++  +   Y++    TL         V  +VL+ KGGND  + H  GKE
Sbjct:  202 PHININDPEFVSAS--KEGDWDIQLQFQPPNSPDLNVLDLGFFRSIDALSDKTAPRSMRELITNVTMSYDQLTAQTLNNVFLTYQEVMGEVLKQKGGNDYKIPHM-GKE 307          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0007F03AA8 (uncharacterized protein LOC108201509 n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F03AA8)

HSP 1 Score: 61.6 bits (148), Expect = 2.060e-8
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 2
Query:   41 AGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEEAV 337
            A   +G +   LV QP NSP+LNI+DL FFRS++  +  +    V++M+  +   Y E + TTL         V N+VL+ KG ND  V H   K+ A 
Sbjct:  335 AAHQQGDFTFILVQQPPNSPDLNILDLGFFRSIQSLMHKKMPKDVDDMLEAVHHAYNELEPTTLGNVWLSYQYVMNEVLKVKGSNDYLVPHVNKKKLAA 433          
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI00053FF3FD (uncharacterized protein LOC104886291 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF3FD)

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-8
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKE 328
            I L+ QP NSP+LNI+DL FFRS++  +  +   S++ ++  + + Y E D TTL         V N++L+  GGN+ +V H   K+
Sbjct:  335 IILIQQPPNSPDLNILDLGFFRSIQSLMHKKIPKSIDSLLEAVNQAYNELDHTTLSNVWLSLQYVMNEILKVGGGNNYNVPHVNKKK 421          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FC44_9STRA1.680e-1041.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI0007F012D18.230e-1034.62uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]
UPI001D0257F71.860e-935.23uncharacterized protein LOC123043747 n=2 Tax=Triti... [more]
UPI001D0245D62.340e-936.90uncharacterized protein LOC123072166 n=1 Tax=Triti... [more]
A0A7S3GU94_9STRA3.250e-932.11Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00084520924.250e-934.09uncharacterized protein LOC123046124 n=1 Tax=Triti... [more]
UPI0007EFBF421.540e-839.77uncharacterized protein LOC108207092 n=1 Tax=Daucu... [more]
A0A484NGQ5_9ASTE1.770e-835.78Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI0007F03AA82.060e-837.37uncharacterized protein LOC108201509 n=2 Tax=Daucu... [more]
UPI00053FF3FD2.800e-836.78uncharacterized protein LOC104886291 n=1 Tax=Beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11327contigC-tenellus_contig11327:4234..4646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog161934.XP_010669055.1
PFAMsHTH_Tnp_Tc3_2
Model size413
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.32e-08
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789173.4657297-UTR-C-tenellus_contig11327:4233..43001680789173.4657297-UTR-C-tenellus_contig11327:4233..4300Choristocarpus tenellus KU2346UTRC-tenellus_contig11327 4234..4300 -
1680789173.491595-UTR-C-tenellus_contig11327:4567..46461680789173.491595-UTR-C-tenellus_contig11327:4567..4646Choristocarpus tenellus KU2346UTRC-tenellus_contig11327 4568..4646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789173.4826424-CDS-C-tenellus_contig11327:4300..45671680789173.4826424-CDS-C-tenellus_contig11327:4300..4567Choristocarpus tenellus KU2346CDSC-tenellus_contig11327 4301..4567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11327.1.1prot_C-tenellus_contig11327.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11327 4301..4567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11327.1.1

>prot_C-tenellus_contig11327.1.1 ID=prot_C-tenellus_contig11327.1.1|Name=mRNA_C-tenellus_contig11327.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=89bp
MQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETT
LERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEEAVVW*
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mRNA from alignment at C-tenellus_contig11327:4234..4646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11327.1.1 ID=mRNA_C-tenellus_contig11327.1.1|Name=mRNA_C-tenellus_contig11327.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=413bp|location=Sequence derived from alignment at C-tenellus_contig11327:4234..4646- (Choristocarpus tenellus KU2346)
CCCACACACGGGCAAGGGCAACTCAGAAATCTTGTCAGGGGCGGGGAAGA CTGAGGGGTGGTGGTGGATTAGGCTTGTGATGCAGCCATCAAACTCCCCC AACCTCAATATCATGGACCTGTGCTTCTTCAGGTCTTTGAAATGCTGGGT GATTTGGGAGTGGTTTGGGTCCGTTGAGGAGATGGTGAGGTTCATTAAGA AACATTATGAGGAGTATGACGAAACCACACTTGAGAGGGCTCGGCAGCTC CGCTTTGTGGTGTACAATCAAGTACTTAGATACAAAGGAGGGAATGACTC CAGTGTGGAGCACACAGAGGGTAAGGAAGAAGCAGTTGTTTGGTGAGCTT GAAACACGCCGAAGGTAGACATGGAGACTTTTTCTGTGGCTGACAAAATT GTGATGGATGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11327:4234..4646-

>mRNA_C-tenellus_contig11327.1.1 ID=mRNA_C-tenellus_contig11327.1.1|Name=mRNA_C-tenellus_contig11327.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=267bp|location=Sequence derived from alignment at C-tenellus_contig11327:4234..4646- (Choristocarpus tenellus KU2346)
ATGCAGCCATCAAACTCCCCCAACCTCAATATCATGGACCTGTGCTTCTT
CAGGTCTTTGAAATGCTGGGTGATTTGGGAGTGGTTTGGGTCCGTTGAGG
AGATGGTGAGGTTCATTAAGAAACATTATGAGGAGTATGACGAAACCACA
CTTGAGAGGGCTCGGCAGCTCCGCTTTGTGGTGTACAATCAAGTACTTAG
ATACAAAGGAGGGAATGACTCCAGTGTGGAGCACACAGAGGGTAAGGAAG
AAGCAGTTGTTTGGTGA
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