mRNA_C-tenellus_contig11327.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.680e-10 Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWV--IWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVE 310 PHT L G GK EG+ +++ QP+ SP+LN+ DL FFRSLKC + E F SVEEM+++I++ YEE L+R Y +L++ G ND S E Sbjct: 41 PHTAA--ETWLKGQGKKEGFD-LKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAF-SVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQE 141
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1) HSP 1 Score: 65.5 bits (158), Expect = 8.230e-10 Identity = 36/104 (34.62%), Postives = 61/104 (58.65%), Query Frame = 2 Query: 2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEH 313 PH N+E + A K +G+ IRL+ QP NSP+LN++DL FFRS++ + ++EE+V +K+ ++EY L R + +++++KG ND + H Sbjct: 226 PHIDCNNAEFMQAASK-DGFD-IRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPH 327
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI001D0257F7 (uncharacterized protein LOC123043747 n=2 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0257F7) HSP 1 Score: 64.7 bits (156), Expect = 1.860e-9 Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 2 Query: 68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEE 331 I+L+ QP NSP+LNI+DLCFFRSL+ S+ E++ +++ Y+ YD TL R+ +++R KGG + H + + + Sbjct: 500 IKLIQQPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFVTLQSCMREIMREKGGIGYKIPHMQKERQ 587
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI001D0245D6 (uncharacterized protein LOC123072166 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0245D6) HSP 1 Score: 64.3 bits (155), Expect = 2.340e-9 Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 2 Query: 68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTE 319 I+L+ QP NSP+LNI+DLCFFRSL+ S+ E++ +++ Y+ YD TL R+ +++R KGG + H + Sbjct: 231 IKLIQQPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFVTLQSCMREIMREKGGIGYKIPHMQ 314
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.250e-9 Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = 2 Query: 2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGS--VEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEG 322 PHT G + + TEGW I +V Q + SP+LN+MDL F SLK VI G+ ++E+++ ++ Y++Y TL++ + + +++R G N H G Sbjct: 24 PHTAGGLEDEVHATASTEGWH-ITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGG 131
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0008452092 (uncharacterized protein LOC123046124 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI0008452092) HSP 1 Score: 63.5 bits (153), Expect = 4.250e-9 Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 2 Query: 68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEE 331 I+L+ P NSP+LNI+DLCFFRSL+ S+ E++ +++ Y+ YD TL R+ +++R KGG + H + + + Sbjct: 148 IKLIQHPPNSPDLNILDLCFFRSLQSHTDCRAPQSIRELIEGVEEEYQNYDVNTLARSFMTLQSCMREIMREKGGIGYKIPHMQKERQ 235
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0007EFBF42 (uncharacterized protein LOC108207092 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFBF42) HSP 1 Score: 62.0 bits (149), Expect = 1.540e-8 Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 2 Query: 74 LVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEEAV 337 LV QP NSP+LNI+DL FFRS++ + + V++M+ + + Y E D TTL + N+VL+ KG ND V H K+ A Sbjct: 386 LVQQPPNSPDLNILDLGFFRSIQSLMHKKMPKDVDDMMEAVHEAYFELDATTLGNVWLSYQYIMNEVLKVKGSNDYLVPHVNKKKLAA 473
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: A0A484NGQ5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484NGQ5_9ASTE) HSP 1 Score: 61.6 bits (148), Expect = 1.770e-8 Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 2 Query: 2 PHTGKGNSEILSGAGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKE 328 PH + E +S + EG W I+L QP NSP+LN++DL FFRS+ S+ E++ + Y++ TL V +VL+ KGGND + H GKE Sbjct: 202 PHININDPEFVSAS--KEGDWDIQLQFQPPNSPDLNVLDLGFFRSIDALSDKTAPRSMRELITNVTMSYDQLTAQTLNNVFLTYQEVMGEVLKQKGGNDYKIPHM-GKE 307
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI0007F03AA8 (uncharacterized protein LOC108201509 n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F03AA8) HSP 1 Score: 61.6 bits (148), Expect = 2.060e-8 Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 2 Query: 41 AGKTEGWWWIRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKEEAV 337 A +G + LV QP NSP+LNI+DL FFRS++ + + V++M+ + Y E + TTL V N+VL+ KG ND V H K+ A Sbjct: 335 AAHQQGDFTFILVQQPPNSPDLNILDLGFFRSIQSLMHKKMPKDVDDMLEAVHHAYNELEPTTLGNVWLSYQYVMNEVLKVKGSNDYLVPHVNKKKLAA 433
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Match: UPI00053FF3FD (uncharacterized protein LOC104886291 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF3FD) HSP 1 Score: 61.2 bits (147), Expect = 2.800e-8 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 68 IRLVMQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTLERARQLRFVVYNQVLRYKGGNDSSVEHTEGKE 328 I L+ QP NSP+LNI+DL FFRS++ + + S++ ++ + + Y E D TTL V N++L+ GGN+ +V H K+ Sbjct: 335 IILIQQPPNSPDLNILDLGFFRSIQSLMHKKIPKSIDSLLEAVNQAYNELDHTTLSNVWLSLQYVMNEILKVGGGNNYNVPHVNKKK 421 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11327.1.1 >prot_C-tenellus_contig11327.1.1 ID=prot_C-tenellus_contig11327.1.1|Name=mRNA_C-tenellus_contig11327.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=89bp MQPSNSPNLNIMDLCFFRSLKCWVIWEWFGSVEEMVRFIKKHYEEYDETTback to top mRNA from alignment at C-tenellus_contig11327:4234..4646- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11327.1.1 ID=mRNA_C-tenellus_contig11327.1.1|Name=mRNA_C-tenellus_contig11327.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=413bp|location=Sequence derived from alignment at C-tenellus_contig11327:4234..4646- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11327:4234..4646- >mRNA_C-tenellus_contig11327.1.1 ID=mRNA_C-tenellus_contig11327.1.1|Name=mRNA_C-tenellus_contig11327.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=267bp|location=Sequence derived from alignment at C-tenellus_contig11327:4234..4646- (Choristocarpus tenellus KU2346)back to top |