mRNA_C-tenellus_contig11268.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11268.2.1
Unique NamemRNA_C-tenellus_contig11268.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11268.2.1 vs. uniprot
Match: D7FX89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX89_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.230e-15
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   13 WLLTNKCLVAAHIFGPRHTYCLSVIRRLCGADMRERAKEHRARLRSQGLRLQLSLTRF 186
            WLL +KC VAAH+FGP+H YCL  I RLC  D+RE A+  RA LRSQG RLQLSLTR 
Sbjct:  711 WLLADKCCVAAHLFGPQHRYCLRAIGRLCREDVREAARPARAALRSQGFRLQLSLTRL 768
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BLAST of mRNA_C-tenellus_contig11268.2.1 vs. uniprot
Match: A0A6H5KZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.150e-14
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   13 WLLTNKCLVAAHIFGPRHTYCLSVIRRLCGADMRERAKEHRARLRSQGLRLQLSLTRF 186
            WLL +KC VAAH+FGP+H YCL  I RLC  D+RE A+  RA LRSQG RLQLSLTR 
Sbjct:  981 WLLADKCCVAAHMFGPQHRYCLRAIGRLCREDVRETARPARAVLRSQGFRLQLSLTRL 1038
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11268.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX89_ECTSI8.230e-1567.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZZ4_9PHAE2.150e-1467.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11268contigC-tenellus_contig11268:2090..4638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size502
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003960.2
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.9171507-UTR-C-tenellus_contig11268:2089..21711680789170.9171507-UTR-C-tenellus_contig11268:2089..2171Choristocarpus tenellus KU2346UTRC-tenellus_contig11268 2090..2171 -
1680789170.9582057-UTR-C-tenellus_contig11268:4530..46381680789170.9582057-UTR-C-tenellus_contig11268:4530..4638Choristocarpus tenellus KU2346UTRC-tenellus_contig11268 4531..4638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.9301255-CDS-C-tenellus_contig11268:2171..24421680789170.9301255-CDS-C-tenellus_contig11268:2171..2442Choristocarpus tenellus KU2346CDSC-tenellus_contig11268 2172..2442 -
1680789170.9407587-CDS-C-tenellus_contig11268:4489..45301680789170.9407587-CDS-C-tenellus_contig11268:4489..4530Choristocarpus tenellus KU2346CDSC-tenellus_contig11268 4490..4530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11268.2.1prot_C-tenellus_contig11268.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11268 2172..4530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11268.2.1

>prot_C-tenellus_contig11268.2.1 ID=prot_C-tenellus_contig11268.2.1|Name=mRNA_C-tenellus_contig11268.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MRERAKEHRARLRSQGLRLQLSLTRFYCVAQREREQEDRVTAACPSLEEP
QFTPMPSPWGTAGEATQKTYVPELLEPFGQRRELNMNLPPQVQSQAPVPQ
LER*
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mRNA from alignment at C-tenellus_contig11268:2090..4638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11268.2.1 ID=mRNA_C-tenellus_contig11268.2.1|Name=mRNA_C-tenellus_contig11268.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2549bp|location=Sequence derived from alignment at C-tenellus_contig11268:2090..4638- (Choristocarpus tenellus KU2346)
GGAGTAGACCTATGGTTGCTTACAAACAAGTGCCTGGTGGCAGCTCACAT
CTTTGGGCCAAGACACACCTACTGTCTCTCTGTCATCCGTCGCCTGTGCG
GAGCCGACATGCGTGAAAGGGCAAAAGAGCACCGCGCACGCCTGAGAAGG
TGAATATATATATATATATATTTGTTCGAGGTGTTTTGGGATAGACGTTT
TAAGTCTCTTGATCGCACTGTAAACCACCTGTCGGCAATGTAGTAAAGTC
GAGTGCTTCACTGGGAAAGGCCTGGGACTTGGAAATTGCTAAGGGATCTA
GAAGCGACGGCTCTTGCGATCCTTGGACAATATGCTGTATCCAACCCTGT
TGGCAATTTTCCTGCCCTCGCCTGTTTGTTTGTCCAATGTGTACAGAAGG
AGCCCCCCAACTCTTGTTGGCTACCGTCAATAGTTTCTATATTGACCGTT
GAGATGTCTGTCTGACCCATAGATGCAACCCCAAGTATGCCTTCGTATCA
GTTGTGTCCTAGGTGTGGATTGGGTGAGTGCAGTCCTGGCACATTTGGTC
TAACCCAGGCTAACGGTTGCATTATTTGTCATAATGCAGTCCTTGTCAAA
CTGCCACGACTTGGATATCTTAACATGGGGAGTGTATTGTTATGACACCG
CTATTTTAATGCTGTGAAGATGTGCACCCTACATATGCATATATATATAT
ATATATATATATATATATATATATGTACATTGAACTTCTTGTGTGTCCGG
TGATTGTCAAGAATTCTGAATTGCCGGTGAAAGTTGTTTTCAGTTTTTTT
TATGCAATCCAGTTTAGTTGGTGTTACAGTATGACTAAGAATAAAAACTG
GCGATGATATATATGTGGAATTCATTATACCGTTAAGAGGTAAATACGTA
ACGTCACTCCGCATCTTCGACACCATAGCCCTTACTTACTTGACGGAATC
AAGAATTTTCCGGATTAGTCAGCCGCCTGCTGAGCTATGTAACCAACTTT
TCTTTTTTTTTGTTAAGTTGCGCCGTATCGTTCTCAGAGGAAATTTACCC
TAACCCTCAATATGTCACACCTCAGACGATGTAACCAACCATCAGGCACC
AACAACGAACACCTCTCTCACAGTGTGTGACCATATTGAGACTTCAGCAG
ACCTTGTTCGTTCCAAGGGTTGAATCCGGCTTTGCTCCGTGATCCCCCTT
GTCCAGAAAATGTTCAGGGTTAGGGTTATAGTTGGTCTATTATGCCCCTC
ATCAGCGCAATAGTCAGCCGGCTGTGCTCTGTAGCGTCTTGTTGTGCTCT
GTGGATGCTCCAGTCCGTTTTTGTACGGAGCTTTGGTTGTACAGAACAAT
TCTACGTACTGATTCTAATTGGCGAAGCGGTTATTGTTCTTTGTGTGAGG
CAGAGGCGGCCCTGCTTCCGATTTTATTGGGGTTTTTTGCGCTTTGTTTG
GTACATTCATTTTTTTATTTTTCTCCTGATTGAAAAGGTGATACTGAAGA
GAAAATAAACAATGTCAGGAGAAAAAAAAAATTAAACAAATCTGTTTTAG
GGCAGGCGCGCTTGATGAGCCAGCTCACTTTGCTATGTGCCGTTTGTTTG
TCTGTAGTCCAGGACAAGTCTCAGGACCATTTCCCGAGTATCGTTCAATG
TTCTGCAAACGCCTGAGCCAATTCAATGCATATCGCCTGTTTGTCTGCAC
TAAAACATGATAGTGTTCGAAACCAAAACATGAAGCTGTGTTATGTGAGT
GTTATGTTGTCCAAGGTGTGCAATAAGTGTGTTTATATCTGAGTTGTTCA
TCTAGATGGGATGATGCGTTGGGTTTCAACGATCAAGAATGAGGACAGAT
GATGATGCCCAGACACTCAAGCATATCGGGATCGTTGACCTCTGATAATT
GCTGTGAATTTATCGTGATTCACATATGTAGGAGTGACCCCTGACCACTA
TAGGTGGGGATAGAAGGCGTGTGAATCGAAAGCCCGTAAGTCCTGTGATA
TAAGTGAGTTAGGTGCGTGTGTGTGTGTGTTGTGTCATATTTGAGTCTAA
TCTGTGCTCCGGCCTGGAAACTGCTCAGATGTGAGGGTGCAAACCCGAAC
TAGTGATGCATCTGTTCAGATAAGTCCCCTCACCCTACCCACACGTACTA
ACACAACATCACCGTTCCAACTCCTATCCTCAAACCTTACGAGCAGCCAA
GGTCTGCGCCTGCAACTTAGCTTGACCCGGTTCTACTGTGTTGCACAACG
GGAGAGGGAACAAGAGGACCGTGTAACTGCTGCTTGTCCCAGTTTAGAAG
AACCGCAATTTACACCAATGCCATCGCCATGGGGAACTGCGGGGGAAGCT
ACACAGAAGACCTATGTGCCTGAGCTCTTGGAACCTTTTGGGCAGCGAAG
AGAACTGAACATGAACCTGCCTCCCCAAGTGCAGTCTCAGGCGCCAGTAC
CACAACTGGAAAGATAATGTGTAAAGACATGGAGTGCAACGCAGGACTTC
ATTGGAACTTCGGGAAGATGGAAACACTCTGCCGTAGGTAAAATTCCAC
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Coding sequence (CDS) from alignment at C-tenellus_contig11268:2090..4638-

>mRNA_C-tenellus_contig11268.2.1 ID=mRNA_C-tenellus_contig11268.2.1|Name=mRNA_C-tenellus_contig11268.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig11268:2090..4638- (Choristocarpus tenellus KU2346)
ATGCGTGAAAGGGCAAAAGAGCACCGCGCACGCCTGAGAAGCCAAGGTCT
GCGCCTGCAACTTAGCTTGACCCGGTTCTACTGTGTTGCACAACGGGAGA
GGGAACAAGAGGACCGTGTAACTGCTGCTTGTCCCAGTTTAGAAGAACCG
CAATTTACACCAATGCCATCGCCATGGGGAACTGCGGGGGAAGCTACACA
GAAGACCTATGTGCCTGAGCTCTTGGAACCTTTTGGGCAGCGAAGAGAAC
TGAACATGAACCTGCCTCCCCAAGTGCAGTCTCAGGCGCCAGTACCACAA
CTGGAAAGATAA
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