mRNA_C-tenellus_contig11032.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11032.1.1
Unique NamemRNA_C-tenellus_contig11032.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 8.380e-36
Identity = 71/116 (61.21%), Postives = 82/116 (70.69%), Query Frame = 3 
Query:  279 WIEKYASPRWDISAPNCYRPVAGTDPLCKGYSRPNAA---QSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQRQ 617
            W+E  A  +W +        V G   L  G     A    ++KE+ LCLL+ C+  LASC+LNPKCFANIICLQTCNGRPDEG+CQIRCGDLFENE+VGKFNACAVS K CVKQRQ
Sbjct:   18 WVE--AGKKWLVGVALASSIVGGGGLLSPGAMPAFAGSPEETKEVGLCLLSECRGALASCLLNPKCFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQ 131
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BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.400e-28
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 3 
Query:  384 AAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQRQ 617
            A     I  C+L+SCQ ELA CV NPKC AN+ C+QTCNGRPDE  CQIRCGD+FENE VG+FNACAVS K+CV QRQ
Sbjct:   31 ALDGAAIGKCILSSCQLELAKCVSNPKCLANLACIQTCNGRPDESACQIRCGDIFENEVVGEFNACAVSQKRCVPQRQ 108
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BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A7S2FLU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLU6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.170e-26
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = 3 
Query:  384 AAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCV 605
            +A    I  CLL SCQ ELA CV NPKC AN++C+QTCNGR DE  CQI CGDLFEN+ VG+FNACAVS K CV
Sbjct:   40 SADGAAIGKCLLKSCQLELAKCVTNPKCAANLLCIQTCNGRADEAACQIGCGDLFENDVVGEFNACAVSQKSCV 113
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BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A7S2NVR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVR0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.020e-24
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 3 
Query:  381 NAAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQRQ 617
            NAA   +IA CL   C  +L  C+ NP C AN+IC+ TCNGRPDE  CQI CG+ FENE VG+FN CAVS   CV Q+Q
Sbjct:  104 NAADGAKIAKCLFQKCPLQLGKCIANPNCLANVICINTCNGRPDESECQIECGNTFENEVVGEFNKCAVSDMDCVPQKQ 182
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BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A0G4HUS0_9ALVE (VDE domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HUS0_9ALVE)

HSP 1 Score: 109 bits (273), Expect = 1.260e-23
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 3 
Query:  384 AAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQR 614
            A  S ++ LCLLN C+ +LA C+ NPKC AN+IC+ TC+ RPDE  CQ+ CG+LFENE VG+FN CAVS+ KCV Q+
Sbjct:  151 ATDSAKVGLCLLNKCKLQLAQCIANPKCLANVICINTCSNRPDESECQVSCGNLFENEVVGEFNKCAVSSMKCVTQK 227
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BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A7S2EKH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EKH5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.510e-23
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  339 VAGTDPLCKGYSRPNAAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQR 614
            ++ T P+    S   +AQ K IALCL   CQ  L  C+ NPKC AN+IC+ TCN  PDE  CQI+CGDLFEN  VG+FNACA+S + CV Q+
Sbjct:  121 ISATVPMASATS---SAQGKNIALCLFEKCQLPLLKCITNPKCLANVICINTCNNSPDEIGCQIQCGDLFENTVVGEFNACALSQQSCVPQK 209
[Close]
BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A0G4F7V7_VITBC (VDE domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F7V7_VITBC)

HSP 1 Score: 107 bits (266), Expect = 6.330e-23
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 3 
Query:  354 PLCKGYSRPN-AAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQR 614
            P C   + P  A    ++  CLL  C  +LA C+LNP+C A+I+CL  CN +PDE  CQ++CG+LFENE VGKFNACAVS KKCV Q+
Sbjct:   68 PFCAAPTMPAFATDPVKVGTCLLQKCNLQLAQCLLNPRCAADIVCLNLCNNKPDEAECQVKCGNLFENEVVGKFNACAVSDKKCVDQK 155
[Close]
BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A1B1Q5V0_9STRA (Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1B1Q5V0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.400e-22
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 3 
Query:  384 AAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQRQ 617
            A  S ++  CLL +CQ ELA C+L+PKC AN+ICL TCN + DE  CQI CGDLFENE VG+FNACA+S K+CV +++
Sbjct:  106 AVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKE 183
[Close]
BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A0A7S2XNS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.720e-22
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 3 
Query:  384 AAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQRQ 617
            AA    I  CLLN C+  LA C+ NPKC AN+IC+ TCNG+ DE  CQI+CGD+FEN+ VG+FN CAVS   CV QRQ
Sbjct:  118 AADGAAIGTCLLNKCKLPLAKCIANPKCLANVICINTCNGKADEMGCQIKCGDIFENDVVGEFNKCAVSDMDCVPQRQ 195
[Close]
BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Match: A1KZQ7_ORYSI (RVDE1 (Fragment) n=7 Tax=Oryza TaxID=4527 RepID=A1KZQ7_ORYSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.990e-22
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 3 
Query:  381 NAAQSKEIALCLLNSCQKELASCVLNPKCFANIICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQ 611
            +A  + +   CLL  C+ ELA C+ NP C AN+ CL TCN RPDE  CQI+CGDLFEN  V +FN CAVS KKCV Q
Sbjct:   69 DAVDALKTCTCLLKECRIELAKCIANPSCAANVACLNTCNNRPDETECQIKCGDLFENTVVDEFNECAVSHKKCVPQ 145
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11032.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE8.380e-3661.21VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2SKA3_9STRA3.400e-2869.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FLU6_9STRA1.170e-2667.57Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2NVR0_9STRA6.020e-2458.23Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A0G4HUS0_9ALVE1.260e-2359.74VDE domain-containing protein n=1 Tax=Chromera vel... [more]
A0A7S2EKH5_9STRA4.510e-2354.35Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A0G4F7V7_VITBC6.330e-2354.55VDE domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A1B1Q5V0_9STRA1.400e-2260.26Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis ... [more]
A0A7S2XNS0_9STRA1.720e-2260.26Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A1KZQ7_ORYSI1.990e-2258.44RVDE1 (Fragment) n=7 Tax=Oryza TaxID=4527 RepID=A1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11032contigC-tenellus_contig11032:1472..3672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FY70
Preferred nameVDE
PFAMsVDE
Model size835
Max annot lvl2759|Eukaryota
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010028,GO:0015994,GO:0016108,GO:0016116,GO:0016122,GO:0016491,GO:0019752,GO:0019904,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0033013,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046422,GO:0046483,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564
Exons4
Evalue9.65e-38
EggNOG OGs28K1H@1|root,2QSFY@2759|Eukaryota
EC1.23.5.1
Descriptionviolaxanthin de-epoxidase activity
Cds size519
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11032.1.1prot_C-tenellus_contig11032.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11032 1648..3532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.9384809-UTR-C-tenellus_contig11032:1471..16471680789159.9384809-UTR-C-tenellus_contig11032:1471..1647Choristocarpus tenellus KU2346UTRC-tenellus_contig11032 1472..1647 +
1680789159.9954584-UTR-C-tenellus_contig11032:3532..36721680789159.9954584-UTR-C-tenellus_contig11032:3532..3672Choristocarpus tenellus KU2346UTRC-tenellus_contig11032 3533..3672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.9537756-CDS-C-tenellus_contig11032:1647..17891680789159.9537756-CDS-C-tenellus_contig11032:1647..1789Choristocarpus tenellus KU2346CDSC-tenellus_contig11032 1648..1789 +
1680789159.961555-CDS-C-tenellus_contig11032:2055..21181680789159.961555-CDS-C-tenellus_contig11032:2055..2118Choristocarpus tenellus KU2346CDSC-tenellus_contig11032 2056..2118 +
1680789159.9735332-CDS-C-tenellus_contig11032:2289..23711680789159.9735332-CDS-C-tenellus_contig11032:2289..2371Choristocarpus tenellus KU2346CDSC-tenellus_contig11032 2290..2371 +
1680789159.9828804-CDS-C-tenellus_contig11032:3300..35321680789159.9828804-CDS-C-tenellus_contig11032:3300..3532Choristocarpus tenellus KU2346CDSC-tenellus_contig11032 3301..3532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11032.1.1

>prot_C-tenellus_contig11032.1.1 ID=prot_C-tenellus_contig11032.1.1|Name=mRNA_C-tenellus_contig11032.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=173bp
MRCPLRRGVVAGATVVATIGTCSALISSPRLGGNWIEKYASPRWDISAPN
CYRPVAGTDPLCKGYSRPNAAQSKEIALCLLNSCQKELASCVLNPKCFAN
IICLQTCNGRPDEGFCQIRCGDLFENESVGKFNACAVSAKKCVKQRQVIC
FIFLNFLSDKMPVLQDTKKKYL*
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mRNA from alignment at C-tenellus_contig11032:1472..3672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11032.1.1 ID=mRNA_C-tenellus_contig11032.1.1|Name=mRNA_C-tenellus_contig11032.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2201bp|location=Sequence derived from alignment at C-tenellus_contig11032:1472..3672+ (Choristocarpus tenellus KU2346)
CTTTGCAAACGCACCCCTCCCAAGGCATCTCCCAGGAAGAACCTCACATG
AGAGTGATCAATCCCTCGTGAGGGCCTTGACCGCTCATACCTGTGAAATA
CGATCCACACAAACACATTAGACTTCAAAGTGAAGTTTTCCCAGATTTTC
ATTGTACATATCGCGAACATTGAAACATGCGTTGCCCTCTTCGTCGGGGA
GTAGTTGCCGGGGCAACGGTTGTTGCCACGATAGGAACCTGCTCAGCCCT
AATCTCATCGCCGCGTCTTGGGGGCAATTGGATTGAAAAATATGCTTCAC
CACGATGGGATATATCAGGTGCGGGATATCAAGCACATTGTGCTTGGGGG
CTTGCCTGTTGTCCAATAGTATGGTACCTTTTGCTATCTCGGTGCCTTGT
ATTTTGGGCGTCGTGGTCTATTCACTGCGTCCTCTTACACTCCAGAGTAT
ACCAGGTAGCCATGAAGGCTGTATGCACTTGGTATCAATACCAGGGGAGT
GATCAAAAGGCAAAGGTGATGTGATGAACAGAATTGCTCTTTACATTTCC
TCTTGTCTGTGCCCCCATGCCGACCTTTTTCCAGCCCCCAACTGCTATCG
CCCAGTCGCGGGAACGGATCCTTTATGTAAAGGGTACTCACGACCTAGTC
TTCGATGCTCTATGAAGAAGCCTGGTGATCACAGCTCTGGCAGATCAATG
GCGTCGATAAAGGGGTACATGGAGTCTGGGAAGAAGTGGCTGGTAAATGC
CGCCATTGCGGGGACACTTATTGGAGGACTTGCCTTGTCGTCGTTGCCTG
GATCGGCGATTGCAACAGATGCAGCCCAAAGCAAAGAAATCGCGCTTTGT
CTCCTCAACTCTTGCCAGAAGGAACTGGCGAGTTGTGTTCTTAACCCAAA
GTAAGTGTTGATGGGTGATGGACTGGAGACCTCTCACTTGGGTTATTTGT
GAAGCCCATCTCAACGCCATTGAACTAAGACCTCAATCAACGGCTCTTGA
CAAGTTCTTCTAATTCGAGAGCAAGGATAAGAACGTTCAAGGGTGCTTAT
CCCTTTCTTCCATGCAACTATGAGGCAATGGGATCGGAGTGTTACCCTTG
ATTATGAGAGCAATAGAAAGAAAACTGGGAGTACTGTGATGTGCCTGTTG
ACTTGAAAGCCTAGGAGGAACCAGTTGGTATTTTTTTGTAGTTTGTGCAC
AAAGGTGACAAGCAGTGGTTAACCTTTTATTTACATTGGGTGGTGCAAAC
GTAATGTGGGTCCAATAAAAAATTGTCTAACAAAAGCCTAGGAAATATTA
ACACTGAAGAGAAGGATTTGTAGCAGGGTATATTGCTTGGGGTGCACCTG
ATCACATTGTATCTTGTCGAGGTACATTGGAATATGGCATACATGCACAC
ACACACACACACACTACTAAAAGAAACCATACAAAGGTACAATTTAATGC
CTAGGTGTAGAGATAAAATTGGTTTGAAAGGTCAGCCAGCTGTTGATCAG
CGGAGCTAGGGTGGAGTTTTTTTTCCCATGTATGCCATCAATTTCAATGA
GGAGATAATAACTCTCATATTGATAGATCACTTCAGATGTGGATCAAAGA
CAAGTTTGTGAAGGGCTTCACTCTCAACGTTCAGAGTGGTGTATTGTACA
TGATGTATGCTTAAAAGGGACAACAAGTACCTTCTTCTGACCTCCTCAAG
TCCTGCCTTTGCTGACTACTTCACATTGCACAAGACCTTTCCCCACACTT
TTGATATGCCTATGCTCCCCAACTCAACATAGATACCCCTTGGTTGTGTA
CACAATGCCATTTTAAAAACAATTTGAAGGTGCTTTGCAAACATCATCTG
CTTGCAGACATGCAATGGCCGGCCAGATGAGGGCTTCTGCCAGATCCGCT
GTGGTGACCTGTTTGAGAATGAGTCTGTGGGAAAGTTCAATGCCTGCGCT
GTGTCTGCGAAGAAATGTGTGAAACAACGCCAGGTGATTTGTTTTATTTT
TTTGAACTTTCTCAGTGATAAGATGCCAGTCCTGCAAGATACCAAGAAAA
AGTATTTGTAAGAGGTGAGGTAGAAAACTTGTAGCACCTGGATATGTTAT
GTACTATATTCACTCAGATGCTTATTCCTATACCCCCCACCCACCCCGTT
CTGAGTTTGTTGAAGACTATGTGTAGCCCTATTTGCACGCTAAGCTTTTG
G
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Coding sequence (CDS) from alignment at C-tenellus_contig11032:1472..3672+

>mRNA_C-tenellus_contig11032.1.1 ID=mRNA_C-tenellus_contig11032.1.1|Name=mRNA_C-tenellus_contig11032.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=519bp|location=Sequence derived from alignment at C-tenellus_contig11032:1472..3672+ (Choristocarpus tenellus KU2346)
ATGCGTTGCCCTCTTCGTCGGGGAGTAGTTGCCGGGGCAACGGTTGTTGC
CACGATAGGAACCTGCTCAGCCCTAATCTCATCGCCGCGTCTTGGGGGCA
ATTGGATTGAAAAATATGCTTCACCACGATGGGATATATCAGCCCCCAAC
TGCTATCGCCCAGTCGCGGGAACGGATCCTTTATGTAAAGGGTACTCACG
ACCTAATGCAGCCCAAAGCAAAGAAATCGCGCTTTGTCTCCTCAACTCTT
GCCAGAAGGAACTGGCGAGTTGTGTTCTTAACCCAAAGTGCTTTGCAAAC
ATCATCTGCTTGCAGACATGCAATGGCCGGCCAGATGAGGGCTTCTGCCA
GATCCGCTGTGGTGACCTGTTTGAGAATGAGTCTGTGGGAAAGTTCAATG
CCTGCGCTGTGTCTGCGAAGAAATGTGTGAAACAACGCCAGGTGATTTGT
TTTATTTTTTTGAACTTTCTCAGTGATAAGATGCCAGTCCTGCAAGATAC
CAAGAAAAAGTATTTGTAA
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