mRNA_C-tenellus_contig11029.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11029.1.1
Unique NamemRNA_C-tenellus_contig11029.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.170e-62
Identity = 119/233 (51.07%), Postives = 149/233 (63.95%), Query Frame = 1
Query:    7 TVEILVNDTTNIQTFCGHGKS-CLADGALTVRLNGIE-VTAPAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNV-RNVAEEGNLFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEEDYRVNDILGTDFKQ 696
            ++ I V D  N+ + C  G S CL DGAL V L+G+E + AP    +G  +EVS ANLPG CR FGFEKYW+RK  E      + ++ R LR    M EWIL D   TN +EC   V R  AEEG +F  QSEH+SFQIVTP  T+RL+HG+LHQ+AM DP+  FDLPDHLT+Q+N+      +    +GILG+T VP  D DG PI   + +IRG EEDYRV+  LG DF Q
Sbjct:  383 SIVIEVIDPHNLDSSCPAGVSPCLGDGALVVLLDGVESLFAPGTVALGADVEVSAANLPGACRSFGFEKYWERKKLE------NARAGRLLRTTPSMGEWILGDPTATNMNECVEYVARAEAEEGGVFAHQSEHVSFQIVTPKATVRLSHGRLHQIAMRDPTDRFDLPDHLTWQMNMAIHHEDVSHAAKGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDFVQ 609          
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.170e-55
Identity = 107/229 (46.72%), Postives = 141/229 (61.57%), Query Frame = 1
Query:   16 ILVNDTTNIQTFCG-HGKSCLADGALTVRLNG-IEVTAPAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNVRNVAEEGN--LFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEEDYRVNDILGTDF 690
            I V D  ++ + C   G +CLADGALTV L+G + + +P    +G G+ +S  NLPG CR FGFEKYW+RK  +AE      + +  L+ +++M +WIL D   TN  EC   V     +G   LF   SEH SFQIVTP  T+RL+HG+LHQLAM DP+  FD+PDHLT+Q+N+ F  V L     GILGET     D +G+PI E M +IRG +EDY V+  L   F
Sbjct:  208 ITVTDPHSLDSACPVQGSTCLADGALTVELDGDVALLSPGEAELGPGVAISAVNLPGACRSFGFEKYWERK--KAEYVASGRRLNNDLQ-MQEMSDWILGDPTATNMAECTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRFDIPDHLTWQMNLAFDNVDLAVDATGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVF 433          
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.450e-54
Identity = 110/222 (49.55%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    7 TVEILVNDTTNIQTFCGHGKS-CLADGALTVRLNGIEVT-APAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNV-RNVAEEGNLFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEEDYR 663
            ++ I V +  ++ + C  G S CLADGAL V L+G E   A     +G G+E+S  NLPG CR FGFEKYW+ K  + E AT      R LR    M EWIL D   TN DEC   V R  AEEG +F  QSEH SFQIVTP  T+RL+HG+LHQ+AM DP+  +DLPDHLT+Q+N+      +    +GILGET VP  D  G PI   M +IRG EED +
Sbjct:   86 SIVIEVAEPHSLDSSCPAGVSPCLADGALRVLLDGDEALFAHGTVSLGLGVEISAVNLPGACRSFGFEKYWEHK--KLEYAT----GGRQLRTQPSMGEWILGDPTATNMDECVEYVARAEAEEGGMFAHQSEHASFQIVTPAATVRLSHGRLHQIAMRDPTDQYDLPDHLTWQMNLAVDHNQVSYAAKGILGETFVPTRDASGKPIMTGMEAIRGTEEDCK 301          
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 7.600e-54
Identity = 108/231 (46.75%), Postives = 140/231 (60.61%), Query Frame = 1
Query:    7 TVEILVNDTTNIQTFCGHGKS-CLADGALTVRLNGIE-VTAPAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNVRNV-AEEGNLFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEEDYRVNDILGTDF 690
            ++ I V +  +I++ C  G S CLADG+L V LNG E ++AP    + +G+ V+  NLPGECR FGFE YW+RK  E      + +  R L + + M +W+L D   TN DEC   V     + G LF LQSEH SFQIVTPT T+RL+HG+LHQ+A  DP+  FDLPDH T+Q+N+G     +     GILGET+ P  D  G  I   M +IRG EEDYRV   L   F
Sbjct:  155 SIVIEVKNPHDIESACPAGVSPCLADGSLRVMLNGKEELSAPGSVALADGVIVTAVNLPGECRSFGFEHYWERKKLE------NARHGRHLGE-QSMGDWLLGDPTATNMDECMEYVAQAEGQAGGLFALQSEHASFQIVTPTATVRLSHGRLHQIATRDPTNRFDLPDHTTWQMNMGIDHNEVSYSATGILGETSTPTKDAYGQDIMTGMEAIRGSEEDYRVAGPLDVTF 378          
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.810e-44
Identity = 100/225 (44.44%), Postives = 134/225 (59.56%), Query Frame = 1
Query:    7 TVEILVNDTTNIQTFCGHGKS-CLADGALTVRLNGIE-VTAPAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNV-RNVAE--EGNLFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEEDYRV 666
            +V I V D  ++++ C  G + CLA+GAL+V L+G E ++AP    +   M+VS  NLPG CR FGFEKYW+RK  E   A     SS+     +DM +WIL D   TN  EC   V R+V E  +G LF  +SEH SFQIV P  T+RL+HG+LHQ+A       + LPDH T+Q+N+      +G   QG+LGET VP  D DG  +   M SIRG +E+  +
Sbjct:  122 SVVITVKDPHSLESSCPAGVTPCLANGALSVSLDGKEALSAPGVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKD----QDMGDWILGDPTATNMAECTEYVARHVVEGGDGGLFAHKSEHASFQIVMPIATVRLSHGRLHQIAQ------YGLPDHSTWQMNLAIDSDSVGVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEECEL 336          
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 4.020e-44
Identity = 103/233 (44.21%), Postives = 134/233 (57.51%), Query Frame = 1
Query:    7 TVEILVNDTTNIQTFCGHGKS-CLADGALTVRLNGIE-VTAPAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNV-RNVA--EEGNLFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEEDYRVNDILGTDF 690
            ++ I V D  ++ + C  G S CLADG+L V L+G E + AP    + + + VS  N+PG CR FGFEKYW+RK  E   A       R L   + M EWIL D   TN  EC   V R++A  E+G+LF  QSEH SFQIVTP   +RL+HG+LHQ+A       F LPDH+T+Q+N+      +    +G+LGET VP     G  I   M +IRG +EDY V   LG DF
Sbjct:  846 SIIISVKDPYSLDSDCSPGVSPCLADGSLIVVLDGNETLLAPGAVELASDVMVSAVNIPGACRSFGFEKYWERKKLEYAQA-----GGRRLSVQQSMGEWILGDPTATNMAECTEYVARHIAGGEDGDLFTHQSEHASFQIVTPAAIIRLSHGRLHQIAQ------FGLPDHMTWQMNLAVDHNDVSLNAKGVLGETMVPTRTVSGEYIMHGMEAIRGTQEDYHVEGPLGLDF 1067          
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.620e-42
Identity = 101/233 (43.35%), Postives = 132/233 (56.65%), Query Frame = 1
Query:    7 TVEILVNDTTNIQTFCGHGKS-CLADGALTVRLNGIEVT-APAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNV-RNVAE--EGNLFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEEDYRVNDILGTDF 690
            ++ I V D  N+ + C  G S CLADG+L V L+G E   AP    +   ++VS  N+PG CR FGFEKYW+RK  E   A       R L   + M EWIL D   TN +EC   V R+VA   +G+LF  QSEH SFQIVTPT  +RL+HG+ HQ+A         LPDH+T+Q+N+      +    +G+LGET +P     G  +   M +IRG EEDY V+  LG  F
Sbjct:  664 SIIISVKDPHNLDSDCPPGVSPCLADGSLIVVLDGNETLFAPGAVELAPDVKVSAVNIPGACRSFGFEKYWERKKLEYAQA-----GGRGLLTEQSMGEWILGDPTATNVEECTEYVARHVAGSVDGDLFAHQSEHTSFQIVTPTAVVRLSHGRRHQIAE------LGLPDHVTWQMNLAVDHNDVSLSAKGVLGETLIPTRAASGEYVMHGMEAIRGTEEDYHVDGPLGLGF 885          
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 7.650e-30
Identity = 81/221 (36.65%), Postives = 106/221 (47.96%), Query Frame = 1
Query:    7 TVEILVNDTTNIQTFCGHGKS-CLADGALTVRLNGIE-VTAPAHYFVGNGMEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEWILSDLAKTNPDECESNVRNVAEEG--NLFNLQSEHISFQIVTPTMTLRLNHGKLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTDKDGSPIREEMGSIRGGEED 657
            T+ I V D  ++ + C  G S CLADGALTV+L+G   + AP     G  + +S  NLPG CR FGFE+YW+RK  E     +   SS  ++ + D   WIL D   TN  EC   V      G   LF    EH SFQI+TP  T+R                           +N+    + +     GILGET  P  D +GSPI + M SIRG ++D
Sbjct:   63 TIVITVTDPHSLDSACPVGVSPCLADGALTVQLDGKHALLAPGEVLFGPQVAISAVNLPGACRSFGFEEYWERKKQEYARGGRRLPSSTQMQAMSD---WILGDPTATNMAECTEYVVEATRNGLGGLFEHDLEHTSFQILTPMGTIRRAMAAFTSFPC----------------MNLAIDRIDVSPNATGILGETQKPTLDANGSPIMQGMASIRGAQDD 264          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11029.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KVF3_9PHAE1.170e-6251.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE1.170e-5546.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Y7_9PHAE1.450e-5449.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW46_9PHAE7.600e-5446.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE2.810e-4444.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE4.020e-4444.21LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE2.620e-4243.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W0_9PHAE7.650e-3036.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11029contigC-tenellus_contig11029:124..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons1
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.7437558-CDS-C-tenellus_contig11029:123..8251680789159.7437558-CDS-C-tenellus_contig11029:123..825Choristocarpus tenellus KU2346CDSC-tenellus_contig11029 124..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11029.1.1prot_C-tenellus_contig11029.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11029 124..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11029.1.1

>prot_C-tenellus_contig11029.1.1 ID=prot_C-tenellus_contig11029.1.1|Name=mRNA_C-tenellus_contig11029.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=234bp
MKTVEILVNDTTNIQTFCGHGKSCLADGALTVRLNGIEVTAPAHYFVGNG
MEVSTANLPGECRPFGFEKYWQRKVHEAELATQSEQSSRALRDVKDMDEW
ILSDLAKTNPDECESNVRNVAEEGNLFNLQSEHISFQIVTPTMTLRLNHG
KLHQLAMPDPSGLFDLPDHLTYQINVGFVEVGLGSMPQGILGETAVPNTD
KDGSPIREEMGSIRGGEEDYRVNDILGTDFKQLH
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mRNA from alignment at C-tenellus_contig11029:124..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11029.1.1 ID=mRNA_C-tenellus_contig11029.1.1|Name=mRNA_C-tenellus_contig11029.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=702bp|location=Sequence derived from alignment at C-tenellus_contig11029:124..825+ (Choristocarpus tenellus KU2346)
ATGAAAACAGTAGAAATCTTGGTCAATGACACTACCAACATTCAGACCTT CTGCGGACATGGAAAGTCGTGCCTTGCTGATGGTGCACTTACCGTTCGCC TAAATGGCATTGAGGTGACAGCTCCCGCCCACTACTTTGTAGGCAATGGT ATGGAGGTTAGTACTGCAAACCTTCCTGGTGAGTGCAGACCTTTTGGATT TGAGAAATACTGGCAAAGGAAGGTTCATGAAGCTGAACTCGCCACTCAAA GTGAGCAGTCCAGTCGAGCACTGAGGGATGTGAAGGACATGGATGAGTGG ATCCTTAGCGACCTTGCCAAAACCAATCCTGACGAATGTGAATCAAATGT TCGGAACGTTGCGGAAGAAGGCAACCTCTTTAACCTCCAATCTGAGCACA TATCATTCCAAATTGTTACCCCTACAATGACACTTCGCTTAAATCACGGC AAGCTGCATCAGCTAGCAATGCCAGATCCGTCTGGACTCTTTGACCTTCC AGATCATCTCACATACCAAATAAATGTCGGATTTGTGGAAGTGGGCCTTG GGTCCATGCCTCAGGGTATTTTGGGTGAGACTGCCGTTCCCAACACGGAC AAGGATGGAAGTCCTATCCGAGAAGAGATGGGATCAATCCGTGGGGGGGA GGAAGACTACAGGGTCAATGATATTCTTGGCACAGACTTTAAGCAGCTTC AT
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Coding sequence (CDS) from alignment at C-tenellus_contig11029:124..825+

>mRNA_C-tenellus_contig11029.1.1 ID=mRNA_C-tenellus_contig11029.1.1|Name=mRNA_C-tenellus_contig11029.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=702bp|location=Sequence derived from alignment at C-tenellus_contig11029:124..825+ (Choristocarpus tenellus KU2346)
ATGAAAACAGTAGAAATCTTGGTCAATGACACTACCAACATTCAGACCTT
CTGCGGACATGGAAAGTCGTGCCTTGCTGATGGTGCACTTACCGTTCGCC
TAAATGGCATTGAGGTGACAGCTCCCGCCCACTACTTTGTAGGCAATGGT
ATGGAGGTTAGTACTGCAAACCTTCCTGGTGAGTGCAGACCTTTTGGATT
TGAGAAATACTGGCAAAGGAAGGTTCATGAAGCTGAACTCGCCACTCAAA
GTGAGCAGTCCAGTCGAGCACTGAGGGATGTGAAGGACATGGATGAGTGG
ATCCTTAGCGACCTTGCCAAAACCAATCCTGACGAATGTGAATCAAATGT
TCGGAACGTTGCGGAAGAAGGCAACCTCTTTAACCTCCAATCTGAGCACA
TATCATTCCAAATTGTTACCCCTACAATGACACTTCGCTTAAATCACGGC
AAGCTGCATCAGCTAGCAATGCCAGATCCGTCTGGACTCTTTGACCTTCC
AGATCATCTCACATACCAAATAAATGTCGGATTTGTGGAAGTGGGCCTTG
GGTCCATGCCTCAGGGTATTTTGGGTGAGACTGCCGTTCCCAACACGGAC
AAGGATGGAAGTCCTATCCGAGAAGAGATGGGATCAATCCGTGGGGGGGA
GGAAGACTACAGGGTCAATGATATTCTTGGCACAGACTTTAAGCAGCTTC
AT
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