mRNA_C-tenellus_contig11021.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11021.1.1
Unique NamemRNA_C-tenellus_contig11021.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 4.230e-71
Identity = 121/282 (42.91%), Postives = 181/282 (64.18%), Query Frame = 1
Query:   22 EVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLD-KSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            ++V+ KARL AKGF+Q  G+DY +TF+PT + AS ++V+ LA   + EL HWD +QAF+Q+ +  ++F++L  GCG  SG ++RL K+LYG KQASR F  RLV  L++ G EQ  +DP VLR++    V  M+A HVDD+L AG   ++  + + + +    +  G++ +++GC   RDR A T+ + Q  YI+SV +RF +   +  S+P   S T D +S       G+ P+RE VGSLMW +  TR DI+NA+R VA++S  P  +HW+A + IL YL
Sbjct:   42 KIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYL 319          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 8.020e-70
Identity = 122/287 (42.51%), Postives = 187/287 (65.16%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGF+Q  G+DY +TF+PT + AS ++V+ LA   + EL HWD +QAF+Q+ +  ++F+++  GCG  S  ++RL K+LYG KQASR F  RLV  L++ G EQ  +DP VLR++    V  M+A HVDD+L AG   ++  + + + +    ++ G++++++GCE  RDR A T+ I Q  YI+SV +RF +   +  S+P  L+   D+S       G+ P+RE VGSLMW +  TR DI+NA+R VA++S  P  +HW+A + IL YL
Sbjct:  943 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYL 1226          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 6.570e-69
Identity = 121/287 (42.16%), Postives = 186/287 (64.81%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGF+Q  G+DY +TF+PT + AS ++V+ LA   + EL HWD +QAF+Q+ +  ++F+++  GCG  S  ++RL K+LYG KQASR F  RLV  L++ G EQ  +DP VL ++    V  M+A HVDD+L AG   ++  + + + +    ++ G++++++GCE  RDR A T+ I Q  YI+SV +RF +   +  S+P  L+   D+S       G+ P+RE VGSLMW +  TR DI+NA+R VA++S  P  +HW+A + IL YL
Sbjct:  733 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYL 1016          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 2.880e-68
Identity = 123/288 (42.71%), Postives = 186/288 (64.58%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLD-KSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGF+Q  G+DY +TF+PT + AS ++V+ LA   + EL HWD +QAF+Q+ +  ++F++L  GCG  SG ++RL K+LYG KQASR F  RLV  L++ G EQ  +DP VLR++    V  M+A HVDD+L AG   ++  + + + +    ++ G++ +++GC   RDR A T+ + Q  YI+SV +RF +   +  S+P   S T D +S       G+ P+RE VGSLMW +  TR DI+NA+R VA++S  P  +HW+A + IL YL
Sbjct:  502 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYL 785          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 7.300e-68
Identity = 115/282 (40.78%), Postives = 182/282 (64.54%), Query Frame = 1
Query:   19 GEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            G++V+ KARL AKGF+Q  G+DY +TF+PT + AS+++++ LA   D E  H+D +QAF+Q+ +  ++F++L  GC   +G ++RL K+LYG +QASR F+ RLV  L++ G EQ  +DP VL ++    V  MIA HVDD+L AG   ++  +   + +    ++ G++ +++GC  +RDR A T+ + Q  YI+SV +RF +   +  S+P  L+    +S       G+ P+R+ VGSLMW +  TR DI+NA+R VA++S  PN +HW+A + IL YL
Sbjct:  208 GKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNV--CRTSSIPASLTNDY-RSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYL 486          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.350e-67
Identity = 123/288 (42.71%), Postives = 186/288 (64.58%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLD-KSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGF+Q  G+DY +TF+PT + AS ++V+ LA   + EL HWD +QAF+Q+ +  ++F++L  GCG  SG ++RL K+LYG KQASR F  RLV  L++ G EQ  +DP VLR++    V  M+A HVDD+L AG   ++  + + + +    ++ G++ +++GC   RDR A T+ + Q  YI+SV +RF +   +  S+P   S T D +S       G+ P+RE VGSLMW +  TR DI+NA+R VA++S  P  +HW+A + IL YL
Sbjct:  769 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYL 1052          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.800e-67
Identity = 116/287 (40.42%), Postives = 182/287 (63.41%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGF+Q  G+DY  TF+PT + AS+++++ LA   + EL H D +QAF+Q  +   +F++L  GCG  SG ++RL K+LYG KQASR F  RLV  L++ G EQ  +DP VLR++    V  M+A HVDD+L AG   ++  + + + +    ++ G++++++GC   RDR A T+ I Q  YI+SV +RF +   +  S+P   +  +++S       G+ P+RE VG  MW +  TR DI+N +R VA++S  P ++HW+A + IL YL
Sbjct:  221 KADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNV--VRTSSIPASPT-VVNRSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYL 504          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 1.410e-66
Identity = 120/287 (41.81%), Postives = 183/287 (63.76%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGFRQ  G+DY +TF+PT + AS+++++ LA   D EL HWD +QAF+Q+ +  ++F++L  GCG  SG ++RL K+LYG KQASR F  RLV  L++ G EQ  +DP VLR++    V  M+A HVDD+L AG   ++  +   + +    ++ G++++++GC   RDR A T+ I Q  YI+SV +RF +   +  S+P   +   ++S       G+ P+RE VG LMW +  TR DI+NA+R VA++S  P    W+A + IL YL
Sbjct:  834 KADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKI--CRTSSIPASPAND-NRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYL 1117          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 8.780e-65
Identity = 121/289 (41.87%), Postives = 180/289 (62.28%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGM--DGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGF+Q  G+DY +TF+PT + AS ++V+ LA   + EL HWD +QAF+Q+ +  ++F++L  GCG  SG ++RL K+LY  KQ SR F NRLV  L++ G EQ  +DP VLR++    V  M+A HVDD+L AG   ++  + + + +    ++ G++++++GCE  RDR A T  I Q  YI+SV  +F +    +   S  +D +R+L + E    V    P+RE VGSLMW +  TR DI  A R VA+ S NP    W+A + IL YL
Sbjct:   36 KADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNVCSTSSTPASPANDNNRSLKEDEGAKDV----PFREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYL 320          
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.580e-63
Identity = 118/287 (41.11%), Postives = 180/287 (62.72%), Query Frame = 1
Query:    4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864
            K ++ G++V+ KARL AKGF+Q  G+DY +TF+PT + AS+++V+ LA   + EL H D +QAF+Q+ +  ++F++L  GC   SG I+RL K+LYG KQASR F  RLV  L + G EQ  +DP VLR++    V  +IA HVDD+L AG   ++  I   + +    ++ G++ +++GC  SRDR A T+ I Q  YI+SV +RF +   +  S+P   +    +S       G+ P+RE VG LMW +  TR + +NA+R VA++S  P  + W+A + IL+YL
Sbjct:  472 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNI--CRTSSIPASPANDS-RSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYL 755          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQD0_9PHAE4.230e-7142.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZH7_9PHAE8.020e-7042.51Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I1_9PHAE6.570e-6942.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKK1_9PHAE2.880e-6842.71Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KN43_9PHAE7.300e-6840.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE1.350e-6742.71Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE3.800e-6740.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE1.410e-6641.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9B2_9PHAE8.780e-6541.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LDZ0_9PHAE1.580e-6341.11CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11021contigC-tenellus_contig11021:2446..3312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7029.ACYPI24114-PA
PFAMsRVT_2,Retrotran_gag_2,rve
Model size867
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.6e-53
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SQRW@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size867
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.5594702-CDS-C-tenellus_contig11021:2445..33121680789159.5594702-CDS-C-tenellus_contig11021:2445..3312Choristocarpus tenellus KU2346CDSC-tenellus_contig11021 2446..3312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11021.1.1prot_C-tenellus_contig11021.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11021 2446..3312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11021.1.1

>prot_C-tenellus_contig11021.1.1 ID=prot_C-tenellus_contig11021.1.1|Name=mRNA_C-tenellus_contig11021.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=289bp
RKTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAA
DKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTK
QASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLV
AGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRY
IKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMW
ASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYLN
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mRNA from alignment at C-tenellus_contig11021:2446..3312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11021.1.1 ID=mRNA_C-tenellus_contig11021.1.1|Name=mRNA_C-tenellus_contig11021.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=867bp|location=Sequence derived from alignment at C-tenellus_contig11021:2446..3312+ (Choristocarpus tenellus KU2346)
CGTAAGACTAACAAATTTGGTGAGGTAGTTAGATACAAGGCACGTTTAGG AGCAAAAGGTTTTCGACAGATTGAGGGTTTAGATTACCAAGATACCTTTG CACCAACACCGTCCCCTGCGTCTTTGAAAATGGTCTTAGGATTAGCTGCA GACAAGGATTGGGAATTGAAACATTGGGATGCGAAACAAGCTTTTATCCA AGCAAATATTAGTGAAAAGATCTTTGTTCGTTTATGTGATGGATGTGGTA TATCGTCTGGAATGATTTTGCGTTTAGTCAAGGCACTTTATGGCACCAAA CAGGCAAGCAGGGAGTTCAATAATCGGTTGGTGCACGTTTTGGAACAGTG TGGTTTAGAGCAATGCAGAGCAGATCCCTATGTGTTACGCTATATAAGAG ATGGCGTTGTTTGTGCTATGATAGCCCCCCACGTAGACGACCTTTTGGTA GCTGGTAAAATAGATGTTTCGATTTGGATTTGCTCTAGGATTAAGGAGCA GTTTTCCATAGAAGATTTTGGTGATCTTGAGTATTATATGGGTTGTGAGA TTTCACGTGACAGAACCGCACAGACTGTCACCATCGGTCAGACTAGGTAC ATTAAGAGTGTTTGTCAAAGATTTGGTATGGATGGGGCAAAGAAGAGGTC GGTACCCCATGATCTCTCAAGGACTCTAGACAAGAGTGAGAATCATCCAA GTGTTGATGGAAATGCACCATACAGAGAGGCAGTTGGTAGTTTGATGTGG GCATCTGTTATGACTAGGCTTGACATTGCAAATGCAATTCGTGAAGTTGC CAAGTACAGTAGCAATCCCAACGTCACACATTGGCGTGCAGTAAGATGTA TTTTAGCATATTTGAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig11021:2446..3312+

>mRNA_C-tenellus_contig11021.1.1 ID=mRNA_C-tenellus_contig11021.1.1|Name=mRNA_C-tenellus_contig11021.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=867bp|location=Sequence derived from alignment at C-tenellus_contig11021:2446..3312+ (Choristocarpus tenellus KU2346)
CGTAAGACTAACAAATTTGGTGAGGTAGTTAGATACAAGGCACGTTTAGG
AGCAAAAGGTTTTCGACAGATTGAGGGTTTAGATTACCAAGATACCTTTG
CACCAACACCGTCCCCTGCGTCTTTGAAAATGGTCTTAGGATTAGCTGCA
GACAAGGATTGGGAATTGAAACATTGGGATGCGAAACAAGCTTTTATCCA
AGCAAATATTAGTGAAAAGATCTTTGTTCGTTTATGTGATGGATGTGGTA
TATCGTCTGGAATGATTTTGCGTTTAGTCAAGGCACTTTATGGCACCAAA
CAGGCAAGCAGGGAGTTCAATAATCGGTTGGTGCACGTTTTGGAACAGTG
TGGTTTAGAGCAATGCAGAGCAGATCCCTATGTGTTACGCTATATAAGAG
ATGGCGTTGTTTGTGCTATGATAGCCCCCCACGTAGACGACCTTTTGGTA
GCTGGTAAAATAGATGTTTCGATTTGGATTTGCTCTAGGATTAAGGAGCA
GTTTTCCATAGAAGATTTTGGTGATCTTGAGTATTATATGGGTTGTGAGA
TTTCACGTGACAGAACCGCACAGACTGTCACCATCGGTCAGACTAGGTAC
ATTAAGAGTGTTTGTCAAAGATTTGGTATGGATGGGGCAAAGAAGAGGTC
GGTACCCCATGATCTCTCAAGGACTCTAGACAAGAGTGAGAATCATCCAA
GTGTTGATGGAAATGCACCATACAGAGAGGCAGTTGGTAGTTTGATGTGG
GCATCTGTTATGACTAGGCTTGACATTGCAAATGCAATTCGTGAAGTTGC
CAAGTACAGTAGCAATCCCAACGTCACACATTGGCGTGCAGTAAGATGTA
TTTTAGCATATTTGAAT
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