mRNA_C-tenellus_contig11008.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11008.2.1
Unique NamemRNA_C-tenellus_contig11008.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11008contigC-tenellus_contig11008:3293..5338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size705
Hectar predicted targeting categorysignal anchor
Exons2
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.0255969-UTR-C-tenellus_contig11008:3292..36121680789159.0255969-UTR-C-tenellus_contig11008:3292..3612Choristocarpus tenellus KU2346UTRC-tenellus_contig11008 3293..3612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.0381901-CDS-C-tenellus_contig11008:3612..38241680789159.0381901-CDS-C-tenellus_contig11008:3612..3824Choristocarpus tenellus KU2346CDSC-tenellus_contig11008 3613..3824 +
1680789159.0505517-CDS-C-tenellus_contig11008:5166..53381680789159.0505517-CDS-C-tenellus_contig11008:5166..5338Choristocarpus tenellus KU2346CDSC-tenellus_contig11008 5167..5338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11008.2.1prot_C-tenellus_contig11008.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11008 3613..5338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11008.2.1

>prot_C-tenellus_contig11008.2.1 ID=prot_C-tenellus_contig11008.2.1|Name=mRNA_C-tenellus_contig11008.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=128bp
MRTARPSRGWDRFRQQRSRHCCGGGRVAAFMAGAIAMMLLWSQLHLYIHQ
PSVDTVDIYKDLSLRNGDASMKKELQDRIQVLEAQVAEVNAALSSWQSQQ
RGEQGEAARQEVGTGKEGTGADVREERG
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mRNA from alignment at C-tenellus_contig11008:3293..5338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11008.2.1 ID=mRNA_C-tenellus_contig11008.2.1|Name=mRNA_C-tenellus_contig11008.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2046bp|location=Sequence derived from alignment at C-tenellus_contig11008:3293..5338+ (Choristocarpus tenellus KU2346)
CATCACAACACAAACGTTGTCTCATCTCCCATCCACTACTGGTGTGAGTT
TGTGTTGTCTTTGCTGTTTCATTCACAATATCCTGGCACCTCGTCGTGGG
GGAACGGGTGCGCGTATTTCTCCCCAGACAACGATAGGGCAGGGGGAGGT
TGGGAGGATTCCGTCCCAATCGAAGAAAAGATACAGAACACGTCTCTCGA
GAAGGATCGGGAATTGTGAAAGCCAGGAAGACGGGTGGAAAGGGTTGGAA
GGTGGAGCGGGGATTTTAATGTTGGTTGTATTGTCACTGTGAGAAGCCTC
TTTCATAAACAGGAGGCACAATGAGGACAGCACGACCATCTAGGGGGTGG
GATCGCTTCCGCCAACAGCGAAGTCGTCATTGCTGTGGTGGGGGCAGGGT
AGCGGCCTTCATGGCTGGGGCCATAGCGATGATGCTCCTTTGGTCGCAGC
TCCACCTTTATATCCATCAACCCAGTGTTGATACGGTCGACATATACAAG
GATCTAAGCTTGAGAAATGGAGATGCATCGATGTGAGTGACCTATTTTTC
TATCATTACATGGGTAAACAGATATTGGAGTCGGGGAGGTGGCCATGTTT
TGTGGACCAACTTTCACTTCCCTGTGTAGGCTTAGGACTACACGGCAGAG
ACGGTTGATCTCATCAAATGGACATTACTCATTACTCTCCCGAGTCGGTA
TACGATCGAGGGAGTTGGGCAGAGCCGCAGCTCACCGCTCAGGCTTGCAA
TATATGTGACTTTCCTAAGCAGCTGATGTTGCAAGCAAGAGCTAGTGGTA
TTTTGTGGATTTCCGTGTCAGTTGAGAGCTCGAATGCATTGGGTCAGGGA
CAGAAAAGATGATGAAATTCAGGCGAACCACAGGAAACCTATTGATTCCT
TAAGACGAGGAAATTGGATATAAAAAATCTTTTGCATGATTTTTTTAATG
CTCCAAACAGTCTTGAAACACATGGATATTTTTGTACGTGGGTCCTTGTT
TCTCATCCCCCCTTCCCCGTCCTCCCCCCTCCACTCCCAACAATTATTCT
GTGTGCGAAAGGAGTTATGCCAAGATTTATAATAATATCATTGAGAAATA
GTGGACTCGATGTAAAAAGCAGCTTTTAGGCTAATGTATTTACCCAAGTA
CCTATATCTAACTGTTAATGTAATGCATCCCCTCTGCAACGTTCCCTGCC
ACATCAAGATCAGAATCCGAATGCTCTCTTTAGTAGAGTTTGGTTGAGGT
GTTGATATGTAGTACTCTATACAATATGACCTACTCCGCACACTAGCCCT
ATCCCAACACAATGCAGGGTGGTGGAAAGCCGATCCTGTGTGCAAAAATT
GAGTTGTTAGGCAGTGGAAGGCGTAGGAAAATGCGTGCAAGGTAGATACG
ATGATGTCTTGCACACGGTCCACTGTAAATAGTTTTAATATTGTATCCTC
TTCAAATGAGGAATGCATCCCTCATTGCATATATAAGCATGTGCGTGTGT
GTGTGTGTATCCTAGCACTTCGCTGGAGTAAATGGATTGATATTACCCTC
AAATGTCATCTTTCAGAGCTTTTCTTGCAGGTATCTTGCTTGGTGTAAGG
ATGTATGCTATCAATATTGCAAAATTTAAGGTGTACATTGTAAAAACACC
CACAAAGTAATTTTCATTTTTTTGTGTCCAAACACTACCATCATCGTCAT
CAATGCAATGTATGCATGGCATCTGTACTCGAACCTTAACATTCCACAAG
ATTGGACTTTATTGTGTAGGTGTTACCAACACTCAACTCCCTAAATCACA
ATGCTTCTGTCACCCACCTCACCTACCCCGCAACCCTCACTCTGCCATCT
ATCCTGGACCGTATATCCTGGCAGGAAGAAGGAGCTACAAGATCGAATCC
AAGTGCTGGAGGCACAAGTAGCTGAGGTGAATGCTGCCTTGTCTTCTTGG
CAATCTCAACAGAGAGGTGAGCAAGGAGAAGCGGCAAGACAAGAAGTAGG
AACTGGGAAAGAAGGTACTGGAGCAGATGTGAGAGAGGAACGGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11008:3293..5338+

>mRNA_C-tenellus_contig11008.2.1 ID=mRNA_C-tenellus_contig11008.2.1|Name=mRNA_C-tenellus_contig11008.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=384bp|location=Sequence derived from alignment at C-tenellus_contig11008:3293..5338+ (Choristocarpus tenellus KU2346)
ATGAGGACAGCACGACCATCTAGGGGGTGGGATCGCTTCCGCCAACAGCG
AAGTCGTCATTGCTGTGGTGGGGGCAGGGTAGCGGCCTTCATGGCTGGGG
CCATAGCGATGATGCTCCTTTGGTCGCAGCTCCACCTTTATATCCATCAA
CCCAGTGTTGATACGGTCGACATATACAAGGATCTAAGCTTGAGAAATGG
AGATGCATCGATGAAGAAGGAGCTACAAGATCGAATCCAAGTGCTGGAGG
CACAAGTAGCTGAGGTGAATGCTGCCTTGTCTTCTTGGCAATCTCAACAG
AGAGGTGAGCAAGGAGAAGCGGCAAGACAAGAAGTAGGAACTGGGAAAGA
AGGTACTGGAGCAGATGTGAGAGAGGAACGGGGG
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