mRNA_C-tenellus_contig1100.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1100.5.1
Unique NamemRNA_C-tenellus_contig1100.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: D7FN57_ECTSI (Glutamate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN57_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 6.610e-82
Identity = 141/178 (79.21%), Postives = 158/178 (88.76%), Query Frame = 3 
Query:  870 QHPEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDHV 1403
            +HPEIG+RAMRLSSVAL+EG DA+ + +GEEVTLKNWGNVK+ KVD+DA GKA  L+GEFIP+GD K+TKK +TWLAKVPDLVPMVL EFDYLVTKDKIEDGENFKDFL   TRAET  LGDPGLRN++EGDV+QLERRGFFR DKPYRG  KPLVLFMIPDGKT+AMSTL+S L HV
Sbjct:  688 KHPEIGQRAMRLSSVALLEGGDADALAEGEEVTLKNWGNVKIKKVDKDATGKAVKLSGEFIPNGDFKSTKK-LTWLAKVPDLVPMVLVEFDYLVTKDKIEDGENFKDFLNPVTRAETAGLGDPGLRNMREGDVVQLERRGFFRADKPYRGEGKPLVLFMIPDGKTQAMSTLASTLKHV 864
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: A0A7S3YHJ9_HETAK (Glutamate--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHJ9_HETAK)

HSP 1 Score: 226 bits (577), Expect = 7.650e-61
Identity = 110/177 (62.15%), Postives = 132/177 (74.58%), Query Frame = 3 
Query:  870 QHPEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDH 1400
            Q PE+G R MRL S  L+EGDDA  I +GE + L  WG V V KV ++   +   L G F P+G++K  KKK+TWLA VPDLVP  L EFDYL+TK+ +E+ E F+DF+ + TRAETD L DPGLRNLKEG+VIQLERRGFFR D+PY G  +PLVLFMIPDGKTKAMS+L SAL H
Sbjct:  422 QRPELGDRVMRLHSRVLLEGDDAAKIAEGESIVLMRWGVVHVGKVTKEG-DRVVSLEGAFDPEGNIKKAKKKLTWLADVPDLVPAKLVEFDYLITKESVEEDERFEDFVNEHTRAETDGLADPGLRNLKEGEVIQLERRGFFRCDRPYLGPGRPLVLFMIPDGKTKAMSSLGSALKH 597
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: A0A7S2Y144_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y144_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.200e-60
Identity = 105/165 (63.64%), Postives = 127/165 (76.97%), Query Frame = 3 
Query:  870 QHPEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKT 1364
            Q PE+G R +R+    L+EGDDA  I++GEEVTL  WGNV+V+     A GK   L GEF+P+GD K TKKK+TWLA V D+VP+ L EFDYL+TK KIEDGE+FK+F+   T AE+D LGDPGLR L++GDVIQLERRGFFR D+PY G  KPLVL+MIPDGKT
Sbjct:   54 QRPELGYRVLRVGEKVLLEGDDAKAIKEGEEVTLMRWGNVRVTSA---AGGK---LKGEFVPNGDFKKTKKKLTWLANVDDIVPVKLTEFDYLITKPKIEDGEDFKNFVNPHTMAESDGLGDPGLRLLQKGDVIQLERRGFFRCDQPYIGPQKPLVLYMIPDGKT 212
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: G4YR88_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YR88_PHYSP)

HSP 1 Score: 205 bits (521), Expect = 5.020e-54
Identity = 96/175 (54.86%), Postives = 128/175 (73.14%), Query Frame = 3 
Query:  876 PEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDH 1400
            P +G + +R  +  L+E DD +   +GEEVTL   GN+ V K+++ A G  T +  E  P+GD K TK K+TWLA VPDLVP+ L EFD+L+ K K+E+G+NF+DFLT+ TRAE  A+GD  LRN+KEG V+QLERRG+FR+D+PY    KP+V+FM+PDGK KAMSTLS+ L H
Sbjct:  321 PSMGNKMVRFCNKLLLERDDVDNFVEGEEVTLMRHGNIIVKKINKAADGTITSVEAENHPEGDFKKTKLKVTWLADVPDLVPLTLVEFDHLLNKPKLEEGDNFQDFLTETTRAEMHAVGDHELRNMKEGQVVQLERRGYFRIDEPYVSDDKPIVMFMVPDGKVKAMSTLSTKLAH 495
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: A0A0P1AWN0_PLAHL (Glutamate--tRNA ligase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWN0_PLAHL)

HSP 1 Score: 209 bits (533), Expect = 3.470e-53
Identity = 99/175 (56.57%), Postives = 129/175 (73.71%), Query Frame = 3 
Query:  876 PEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDH 1400
            P +G + +R  S  L+E DD N   +GEEVTL   GN+ V K++++A G  T +  E  P+GD K TK K+TWLA VPDLVP++L EFD+L+ K K+E+G+NF+DFLT  TRAE  A+GD  LRN+KEG V+QLERRG+FRVD+PY    KP+V+FM+PDGK KAMSTLS+ L H
Sbjct:  697 PTMGNKMVRFCSKLLLERDDVNNFVEGEEVTLMRHGNMIVKKMNKNADGMITSVEAENYPEGDFKKTKLKVTWLADVPDLVPLILVEFDHLLNKPKLEEGDNFQDFLTDTTRAEMHAVGDHELRNMKEGQVVQLERRGYFRVDRPYLSDDKPIVMFMVPDGKVKAMSTLSTKLAH 871
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: W7TTA8_9STRA (Glutamate--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTA8_9STRA)

HSP 1 Score: 209 bits (531), Expect = 5.880e-53
Identity = 100/179 (55.87%), Postives = 133/179 (74.30%), Query Frame = 3 
Query:  870 QHPEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRD-ARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDHV 1403
            + PE+G R +RL++V L+EG DA G+ +GEEVTL  WGNVK+  V++D A G+   + G     GD +ATK K++WLA V D VP+VL EFDYL++K K+E+GE+FKDF+   T+AE+    DP LRNLK G+V+QLERRGF+  D+PY G  K +VLFM+PDG++KAMSTLS AL HV
Sbjct:  685 KRPELGSRVLRLANVVLLEGQDAEGLTEGEEVTLLRWGNVKILSVEKDPATGRVLRVRGRHNAAGDPRATKLKLSWLADVRDKVPVVLTEFDYLISKKKLEEGEDFKDFINPVTKAESLGWADPALRNLKRGEVVQLERRGFYICDRPYMGPEKGVVLFMVPDGRSKAMSTLSGALKHV 863
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: A0A1V9YRF8_9STRA (Glutamate--tRNA ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRF8_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.810e-52
Identity = 101/177 (57.06%), Postives = 130/177 (73.45%), Query Frame = 3 
Query:  870 QHPEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDH 1400
            ++PE+G    RLSS  L+E DDAN    GE+VTL  +GNV ++ +++++ G+   +  +  P+GD K TK KITWLA+V D+VP  L EFD+L++K K+E+ +NFKD LT  TRAE  ALGD GLRNL+ GDVIQLERRG+FRVD PY    KPLVLFMIPDGK +AMSTLS+ L H
Sbjct:  685 KNPELGHTVKRLSSSLLIERDDANSFTVGEDVTLMRYGNVTITAINKNSDGEIVSVDAKDHPEGDFKKTKLKITWLAQVDDIVPATLVEFDHLISKPKLEENDNFKDHLTPVTRAEMHALGDHGLRNLQYGDVIQLERRGYFRVDSPYVSKDKPLVLFMIPDGKQRAMSTLSTNLAH 861
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: T0RKD4_SAPDV (Glutamate--tRNA ligase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RKD4_SAPDV)

HSP 1 Score: 202 bits (514), Expect = 1.120e-50
Identity = 100/177 (56.50%), Postives = 128/177 (72.32%), Query Frame = 3 
Query:  870 QHPEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDH 1400
            ++PE+G    RLSS  L+E DDAN    GE+VTL  +GNV ++ +++++ G+   +  +  P GD K TK KITWLA+V D+VP  L EFD+L++K K+E+ +NF D LT  TRAE  ALGD GLRNL+ GDVIQLERRG+FRVD PY    KPLVLFMIPDGK +AMSTLS+ L H
Sbjct:  704 KNPELGHTVKRLSSSLLIERDDANNFSIGEDVTLMRYGNVTITSINKNSDGEIVSVDAKDHPAGDFKKTKLKITWLAQVDDIVPATLVEFDHLISKPKLEENDNFVDHLTPVTRAEMHALGDHGLRNLQYGDVIQLERRGYFRVDAPYVSKDKPLVLFMIPDGKQRAMSTLSTNLAH 880
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BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: A0A7S2L7W1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L7W1_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.640e-50
Identity = 93/175 (53.14%), Postives = 123/175 (70.29%), Query Frame = 3 
Query:  876 PEIGKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDH 1400
            P  GKR +R+    L+E  D  GI  GE + L  WG V+++KVD        GL G+F+PDGDVKA K+KI+W+A VP+  P++L+EFD LV+K+K+E+ +NF+DF+   T A+T+ +GD GL+ LKE D+IQLERRGF+RVD+ Y   SKPL LFMIPDGK KAMS L   L H
Sbjct:  279 PSFGKRLVRIGKKVLLEKVDTEGITVGENIVLTRWGVVEITKVDG-------GLEGKFVPDGDVKAAKRKISWIADVPENTPVILSEFDNLVSKEKLEEEDNFEDFINPDTEADTEVIGDAGLKTLKEHDIIQLERRGFYRVDRAYVNESKPLKLFMIPDGKKKAMSGLDGKLAH 446
[Close]
BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Match: A0A2D4CBD5_PYTIN (Glutamate--tRNA ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBD5_PYTIN)

HSP 1 Score: 202 bits (513), Expect = 1.670e-50
Identity = 104/172 (60.47%), Postives = 124/172 (72.09%), Query Frame = 3 
Query:  885 GKRAMRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGEFIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFLTKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFMIPDGKTKAMSTLSSALDH 1400
            G + MR +   LVE DDAN   +GEEVTL   GN+ V KV RDA G  T +  E  P+GD K TK KITWLA +PDLV  VL EFD+L++K K+E+ +NF+D LT  TRAE  ALGD  LRNL++ DV+QLERRGFFRVD+PY    KPLVLFM+PDGK KAMSTLS+ L H
Sbjct:  723 GNKIMRFARRLLVERDDANLFVEGEEVTLMRHGNIIVRKVVRDAAGVVTAVEAENHPEGDFKKTKLKITWLADLPDLVECVLVEFDHLISKPKLEENDNFQDHLTPVTRAEMVALGDHELRNLQQDDVVQLERRGFFRVDRPYISKDKPLVLFMVPDGKAKAMSTLSTNLAH 894
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1100.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN57_ECTSI6.610e-8279.21Glutamate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S3YHJ9_HETAK7.650e-6162.15Glutamate--tRNA ligase n=1 Tax=Heterosigma akashiw... [more]
A0A7S2Y144_9STRA1.200e-6063.64Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
G4YR88_PHYSP5.020e-5454.86Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0P1AWN0_PLAHL3.470e-5356.57Glutamate--tRNA ligase n=1 Tax=Plasmopara halstedi... [more]
W7TTA8_9STRA5.880e-5355.87Glutamate--tRNA ligase n=2 Tax=Monodopsidaceae Tax... [more]
A0A1V9YRF8_9STRA4.810e-5257.06Glutamate--tRNA ligase n=1 Tax=Achlya hypogyna Tax... [more]
T0RKD4_SAPDV1.120e-5056.50Glutamate--tRNA ligase n=2 Tax=Saprolegnia TaxID=4... [more]
A0A7S2L7W1_9STRA1.640e-5053.14Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2D4CBD5_PYTIN1.670e-5060.47Glutamate--tRNA ligase n=1 Tax=Pythium insidiosum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1100contigC-tenellus_contig1100:9908..14912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN57
Preferred nameEPRS
PFAMsGST_C,GST_C_3,HGTP_anticodon,ProRS-C_1,WHEP-TRS,tRNA-synt_1c,tRNA-synt_1c_C,tRNA-synt_2b
Model size2492
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01885,ko:K14163
KEGG ReactionR03661,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004818,GO:0004827,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0017148,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034641,GO:0034645,GO:0034660,GO:0035613,GO:0035770,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0046483,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097452,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1990904,GO:2000112,GO:2000113
Exons4
Evalue5.41e-85
EggNOG OGsCOG0008@1|root,KOG1147@2759|Eukaryota
EC6.1.1.15,6.1.1.17
Descriptionglutamyl-tRNA aminoacylation
Cds size510
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1100.5.1prot_C-tenellus_contig1100.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1100 10994..14016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.7486892-UTR-C-tenellus_contig1100:9907..109931680789158.7486892-UTR-C-tenellus_contig1100:9907..10993Choristocarpus tenellus KU2346UTRC-tenellus_contig1100 9908..10993 -
1680789158.8118467-UTR-C-tenellus_contig1100:14016..149121680789158.8118467-UTR-C-tenellus_contig1100:14016..14912Choristocarpus tenellus KU2346UTRC-tenellus_contig1100 14017..14912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.7633467-CDS-C-tenellus_contig1100:10993..111941680789158.7633467-CDS-C-tenellus_contig1100:10993..11194Choristocarpus tenellus KU2346CDSC-tenellus_contig1100 10994..11194 -
1680789158.7731822-CDS-C-tenellus_contig1100:11635..117371680789158.7731822-CDS-C-tenellus_contig1100:11635..11737Choristocarpus tenellus KU2346CDSC-tenellus_contig1100 11636..11737 -
1680789158.7897687-CDS-C-tenellus_contig1100:12964..130471680789158.7897687-CDS-C-tenellus_contig1100:12964..13047Choristocarpus tenellus KU2346CDSC-tenellus_contig1100 12965..13047 -
1680789158.8009272-CDS-C-tenellus_contig1100:13892..140161680789158.8009272-CDS-C-tenellus_contig1100:13892..14016Choristocarpus tenellus KU2346CDSC-tenellus_contig1100 13893..14016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1100.5.1

>prot_C-tenellus_contig1100.5.1 ID=prot_C-tenellus_contig1100.5.1|Name=mRNA_C-tenellus_contig1100.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=170bp
MRLSSVALVEGDDANGIEDGEEVTLKNWGNVKVSKVDRDARGKATGLTGE
FIPDGDVKATKKKITWLAKVPDLVPMVLAEFDYLVTKDKIEDGENFKDFL
TKKTRAETDALGDPGLRNLKEGDVIQLERRGFFRVDKPYRGSSKPLVLFM
IPDGKTKAMSTLSSALDHV*
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mRNA from alignment at C-tenellus_contig1100:9908..14912-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1100.5.1 ID=mRNA_C-tenellus_contig1100.5.1|Name=mRNA_C-tenellus_contig1100.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5005bp|location=Sequence derived from alignment at C-tenellus_contig1100:9908..14912- (Choristocarpus tenellus KU2346)
TATAAGCTTTGTCCAGGTTTTTGTAGTCTTAGGGAATATCATATGTATTG
CTGCAGAGTGATTGGGGGGGGGGGGTTGTACCTTTTTTTTGTATTGTAAT
TGTGCCAAGATTGAGGAGACACCTTGTTGGCTTGAATTGTCAGTTGCGGG
CTATTGGTGGAGAGGTTTATGTGGACAATTGTCTTTTGTTCTGTGTCCCC
TACCCTTCAATCTTATCGTTGTTCCTCTTGGTAAGGCTCTAGGGCTCTGT
AGCTCTACTACATAGCACTAGCAGTATTGTTGTAGATGTGTGTTGGTGTT
TTATTCAAGTAGTTGATAGTAGATGAAGTTATTTGAGAATCTGATGTGTT
TTCTGGTATCTCCATGCCTATATTTTTGTTTTTTTTGTTGCACCTTGGAA
AAGAGTCTGTTAAATAGCACTACAAAAAAGACAAGTTCATTCTGCACACC
CTCCATCTCCTGCGCATACCCCAAGGGGACTTCAAAGTTTACGTTCACAT
GCAAGTTACTCAAGGTATATTTCAGGGCTTTGTACTAGACCGACTGGTCA
GACCGTGACCATGGCCAGTGGCCTGATCCGGTCTCAGTCTCCATGGCCCC
GGTCTGACCCCGATAAGACATATTTCACCCAGCCTGGCCCACAGTCCAGT
CCAACTACAATCTGAATTACTCCAGTCTGACCTGTTCAGACATCTAAACA
GGGTGGTCCATGGTCCACTCTGGTTCTGCTCTCTGATGGACCTTGACCGG
TACCATTGGAAAGAAATATAAAAAAATCCACCCAGCCAAGTGAAAAGTTC
AACTGGATTGGCTTGATTCCTGCTCACCTTCTATGAAGTATTAACAACTC
GTATTGGCTGGATGCCTGGCAGCACCCGGAGATTGGCAAGCGGGCGATGC
GGTTGAGCTCGGTGGCGCTGGTGGAAGGTGATGATGCCAACGGAATCGAG
GATGGGGAGGAGGTTACACTGAAGAACTGGGGCAATGTCAAGGTCAGCAA
GGTTGATCGGGATGCCCGAGGTAAGGCCGTCCCCCTCTCTCTCCCTCTCC
TACTGAATTTCTTGGAAGAGATGCCGCTTCGCTTTGATTGTAATGGTTAG
CATGGTATTTATTATTGCCTGGGGGATGTGGTGGAGTTATCTCAGTGTTT
CTAGTCGAACTTACAGAGATAAGGAACATTCCCTGAATTTTCTCCTTATT
TTCTGCAATGTGCTGATTTTATTCAGCAGAAGCAGTGATTCTTGGATCAA
GTTCGATTTTTTTTTTCATTGAAGAATATTCAAGTTATTTGTTTATTAAT
TTTTATTATTTAATTTTGTGTTTGTTTTATTGTAATGTCGGTTGGTCTTT
TAGAAAAAACAAAACAAAAAACTCCTTGCGATGCCTCGTGTGACTGTGCT
CACACCTACATTTGATTGAGGTGCAATTGAATCATTTTTGAGGAGGTGAC
ATGAATGCTGTTTGTTTTCTATGGTTGAACCAGTGTTCGTTGAAAGCACT
GATAAAAGAAAGTTTGTGGTGTTTTTTCTTTTTTTTAATTTGTGTGTTTG
CGATACAAGCCTTCTTCATCTAGTCGATTCCCCAACGGATATTGTCTTGC
TGTTGTATGCAGTCTACTCCAGAGTACAGATTTGGTGTCCGCAGCACTAC
TACCACAGAACACTGCTACAGAGCTGAAAAATTATGGGACTTCACATGTC
ATTGTTGCCTCTATACATAGGATTGCCAGTGGCAAAGCATCTAGAGCTTC
GGTATGAGTATCGGATGACCTGCAGGCTTTTGTCTGCTGAGCTATGATCC
CTGATCATGGTTCTGTACCCTTATACATACACCTCTCAATCTACATCTAC
ACACCCACCTGGCAGGGAAAGCAACAGGCTTGACGGGAGAGTTCATTCCT
GATGGAGACGTCAAGGCTACTAAGAAGAAGATCACCTGGCTGGCAAAGGT
GAGCACCAACAACCAAGCCTCACAGGGTTCTTTGTGGATCTGTGCTCCAT
ATTTTTGTTGTGCATGCATGCACATCAATCTGTCTGCCCTGGAGGGGGGA
GGGGCGGCGGATACCAGTACCTTAGTGTTGTGTAAGGAGCATCATGAGCA
TCATTTTGTTTTCCCTAACTTATCGAGAGTATGATCATTTCAAAGAGTTG
GTATTAGGGTTAAGGGCTAGGGTACATACACATGGCAGAGTGTTTCTAAA
ATGTATGTGTTTTGTGCACTACTACATGGGTAAAGGGGGGGGAGGATAGA
AATAATAGCAGCCTTGTGGTTGACCTGTGTTACGTCTTGTTTTGGCGGTA
TGTGTGTAGAAAGGTGTTCCTGCAGGTTATAGATCATAGGGTGTATCAAG
GAGCAAAGATAGGCTTCGCCATTAATCATGGAAGGTCTCTGGAAGCCTAA
CCATCTAAGAGGCATAGGAGAACATTGTACAGGACATTCACAGATGTGAT
GACCACCACTCCGAAAGATATTTAAAATCCTAGCCTATTCTGGTTGGATC
TAGTTTTGTTTATCACTACAATTTATTTAGGTAGGCGCAGTTTTTGCTCC
TTGGTCTGACTTTCCTGCAACACTATTTAGTCGTAGACCATCTCTCTCTT
CTAGTCATCGCATACTAAGAAGGCTCAGGCACTTAAGTTGTAGCTGCAAA
TTGACAAGATCTTTTTCTGCAGCATGTGTAGTGGTCAATGGTGTTGATAG
TTTTGTGCATCAACCTTTGTGACCCCTTTGTACACCTGTCAAAAGGGATT
ATGTCGGTTTTCCATCAAGATCCCGTGGCAGGGGGACACCACTTTGTCGG
CATAGAAAATGTCATCGCAATTTTTGGTTAGTTGGAAGAGCTGTACCAAA
CTGTAGTAAGAGCTGAACCCCTGAATATATTGTTCAAGTCGCTGCTACGA
ATGTTGGAAGGGGTCCACCTTCTTCCCTCCATCAACTTACCAAATTCTGT
TTTACTCTCAAGGTAGTCCTCAACTTTGCCTGAATTTCAATGACCGCTAG
AGGCCCTTCTCCTCTCCCTAGTCCCAATATTTCCTCCTCTGGACCTGATT
GACCACCACTCTTGAGGCCCCCGGTCTGTGAACTAGATCATGTAGATAAT
TTTTTTAAGTGTGCTCCTTAGCTGTCATGGTTTTCCCTCTAAATGCTGGA
TTCCGGTCTGTTTCCCTGCCCAAAGGTCCCAGACCTGGTTCCAATGGTCC
TGGCAGAGTTTGACTACTTGGTGACCAAGGACAAGATTGAGGACGGCGAG
AACTTCAAGGACTTCCTCACTAAAAAGGTTAGGTCTCTTTTTTTTTGTTT
TGGTTGTGTTTGTTAAATGCGGTACATAAATTACTCAAAGTACTGTGGCT
GTGGACATTTTATGGAATACTTCCTTCCACTGGAGTCTGTACAAATGGTC
GGGATTCTGATGGGAAACACACATGAGCTAAATGAAGGACAGTCTTTCTG
AAGTGAGTGGCAGTACCACTTGCTCCATCGATCCTGGAACAGTGATGAAT
CCTTTGTCTGCTAGAATGCTAGAACTGTGGACCTGTTCGCGATCAGAGTG
CTGCATAGCCTTCAATATACACAAGGGATGGAGCAGTGTAATACTGCAAC
TTCTCTATAATGCGGTGCTTCACTTGTCACCTTCACATGGCCATACCCGT
TTCACACAACCTGGACAGTGTGCTTAACGTACCCCCTGCTTGGACCATTC
CATGTTGTTCTCTCACAGACACGGGCTGAGACTGATGCACTTGGTGACCC
GGGGCTTCGCAACCTCAAAGAAGGAGATGTGATCCAACTTGAACGGCGAG
GGTTCTTCCGGGTGGACAAACCATACAGGGGTTCCAGCAAGCCCCTAGTG
CTTTTCATGATTCCTGATGGGAAAACCAAGGCTATGTCAACCCTCTCTTC
TGCACTTGATCATGTCTGAAATGCATTATTTGCTTGAGTGTATTTTGTGT
GTGTGTGTCTGTTTGCTTTGATGACTCTATCTCATTATTATGGTTGTAAC
TTCTCATTGGCACATCGGTGCTCCCGCTTTTGTTGCGACAAAGATTGAAA
GTGCTTCAGATGTTTGAATGGCATCTGCCTTGACTTGATTGGGGGTTTTG
TCTTTTTGTGCCAAGAGGCTCTTTTGACCCGAATTGACTGAGAGTTTTAG
AGGATTGTTGTTGTTGATTGAATATTTTCAATCCACCACACGGATGTGCA
TACGTTTGATGGTATGTACTCAATCTAATGGGGTGCACGGCAATGCCATT
TGGTGGATTGGGATCATATGCACACATGGCAAGGTAGCTTTGACTGCAAG
CGGGTGCAGAAGAGGGTCAGAAATCCGTCGTGTTGCTTTAAATTGGGGGG
TTGTGTTTTAACCCCTGATTCTTGTGTACTTGAGAGTTGCCATACAGAAC
ATCCTACTGTGGACACCCTTTTGCTAGTATGTTGATCTCGTGGATTGACT
TCTACTATGCATGTGTTGCGGGATACCATGATCATACCTGGAGTGCTGTG
CTACTGATGAGTGAGTCAATAGTATTAGTGCAATGAATGAGTGTAGAGAA
ACAGTGTGGAAGTGGGTCCTTCTCGTCTCTCTAGGGCACCAGAGCACATA
TACGTATAAAATACTTGTATTGGCTAGTTGCCTTCATGTGTGCAACTTGT
GGACAAAATGAATTAGTTGCAATAGTCGTAGGATTACAATAAACTATGTC
ATGTCTGTCTTGCGGAAATGTTCCTACATGTTTTGTGGGGAGTGGGTATA
TATCTTGGAGCAATACCCCTATCCCAGATGACTGAAATTGACATGACAAG
TAGTACCTAGGTTGGGACTTGGTGTTATTTTACATTATGGTGCATAGAGT
TAGAGGCCACCTCTCATCACAACCAGCTTAACATTTTTCTCGTCCTGACT
CAATAGCTGAAGAAGCCACCGCTAAGGGTTTTATCATCATGTTCTGCCTA
CCTCTTCTTCTGTATTCCACTCAGTGCTCAGTGTCAGGGGTATCAAAAGC
AGTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig1100:9908..14912-

>mRNA_C-tenellus_contig1100.5.1 ID=mRNA_C-tenellus_contig1100.5.1|Name=mRNA_C-tenellus_contig1100.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=510bp|location=Sequence derived from alignment at C-tenellus_contig1100:9908..14912- (Choristocarpus tenellus KU2346)
ATGCGGTTGAGCTCGGTGGCGCTGGTGGAAGGTGATGATGCCAACGGAAT
CGAGGATGGGGAGGAGGTTACACTGAAGAACTGGGGCAATGTCAAGGTCA
GCAAGGTTGATCGGGATGCCCGAGGGAAAGCAACAGGCTTGACGGGAGAG
TTCATTCCTGATGGAGACGTCAAGGCTACTAAGAAGAAGATCACCTGGCT
GGCAAAGGTCCCAGACCTGGTTCCAATGGTCCTGGCAGAGTTTGACTACT
TGGTGACCAAGGACAAGATTGAGGACGGCGAGAACTTCAAGGACTTCCTC
ACTAAAAAGACACGGGCTGAGACTGATGCACTTGGTGACCCGGGGCTTCG
CAACCTCAAAGAAGGAGATGTGATCCAACTTGAACGGCGAGGGTTCTTCC
GGGTGGACAAACCATACAGGGGTTCCAGCAAGCCCCTAGTGCTTTTCATG
ATTCCTGATGGGAAAACCAAGGCTATGTCAACCCTCTCTTCTGCACTTGA
TCATGTCTGA
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