mRNA_C-tenellus_contig110.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig110.1.1
Unique NamemRNA_C-tenellus_contig110.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A6H5JRP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP2_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 5.570e-59
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            YVH+PDWKIPLTKKGF + + AGE IKE+IGDKPLFIYTSPY+RTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIV SKAERARFGRFYYR
Sbjct:   60 YVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYR 159          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: D7FZ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ54_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.140e-58
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            YVH+PDWKIPLTKKGF + + AGE IKE+IGDKPLFIYTSPY+RTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIV SKAERARFGRFYYR
Sbjct:  138 YVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYR 237          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A836CA23_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA23_9STRA)

HSP 1 Score: 179 bits (453), Expect = 3.770e-53
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGEN-----------IKEFIGDKPLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            YVH+PDWKIPLTK+G++D+R+AG+            IKE +GDKPLFIYTSPY+RTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATI  SK ERARFGRFYYR
Sbjct:  101 YVHVPDWKIPLTKQGYRDARLAGQKXXXXXXXXXXKIKEHVGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIRDSKQERARFGRFYYR 211          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A7S1XZK9_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.290e-40
Identity = 72/128 (56.25%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLAG----------------------------MVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            YV+ PDWKIPLTKKG++D+R+AG+ IKE +GD P++IYTSPY+RTKQTLAG                            MV A+DTN IVGVREEPRLTEQQFGNFQN+  +  S+ +R RFGRFY+R
Sbjct:  102 YVNTPDWKIPLTKKGWKDARLAGQQIKEIVGDSPIYIYTSPYLRTKQTLAGKGSPQPRSLPLSLAPLPLSSTRPPAPPGMVGAWDTNEIVGVREEPRLTEQQFGNFQNVTNVKESREQRTRFGRFYFR 229          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A7S2SR22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR22_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.440e-35
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            Y+++PDW+I LT++G + ++  G  I   IG+ P+F YTSPY RTK+TL  MV  F+ + IVGVREEPRLTEQQFGNFQNL  I   K ER+ +GRFYYR
Sbjct:   61 YINVPDWRISLTEEGKEQAKATGSKISHIIGEDPVFFYTSPYRRTKETLQSMVTEFEQSDIVGVREEPRLTEQQFGNFQNLDEIQICKVERSSYGRFYYR 160          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A4D9D0Z6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Z6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.940e-33
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            YV  PDWK+PL+  G + +R  G  +K  +GD+PL+IYTSPY RTKQTL+ ++E+F+ N  VGVREEPR+TEQQFGNFQ    +  +K ER  FGRFY+R
Sbjct:  195 YVETPDWKVPLSPIGHEQARQTGRQLKALVGDEPLYIYTSPYRRTKQTLSNILESFEDNLKVGVREEPRITEQQFGNFQCQQLMQQAKKERCNFGRFYFR 294          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A7S0SR39_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR39_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.470e-31
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDK-PLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            Y  +PDWKIPLT+KG + +   G+ IKE IG+  P+ +Y SPY+RTKQT A M++    N ++ VREEPRLTEQQFGNFQ    ++  K ER +FGRFYYR
Sbjct:   65 YCSMPDWKIPLTEKGKEQASNVGKKIKEIIGNNSPISVYLSPYIRTKQTFALMIKELSNNNVITVREEPRLTEQQFGNFQKAEDMIRYKKERGQFGRFYYR 165          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A7S2N3B8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N3B8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.160e-30
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKP-LFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            YV  PDW++PLT KG   +  AG+ +++ +G K   F Y SPY+RT++TL  + +  D + IV +REEPR++EQQFGNFQN+  ++ +KAER  FGRFYYR
Sbjct:    8 YVKTPDWRVPLTSKGRSQASDAGKELRDLVGPKGCFFFYCSPYLRTRETLQEVTQHIDQDQIVSIREEPRISEQQFGNFQNVQEVLQAKAERHEFGRFYYR 108          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: L1IPB5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPB5_GUITC)

HSP 1 Score: 112 bits (280), Expect = 5.220e-29
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            Y  + DW+I LT++G Q +R AG  +KE  G   +F Y SPY RT QT   +++AF+   + G+REEPR+ EQQFGN QNL +I  SK ER ++GRF+YR
Sbjct:   17 YTRVSDWRISLTQRGRQQARAAGHKLKELAGASDVFFYYSPYYRTVQTCEEILQAFNPEQVRGMREEPRMAEQQFGNLQNLTSIKKSKDERHKYGRFFYR 116          
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Match: A0A7S3QIR9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIR9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.820e-28
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR 300
            YV  PDWK+PLT++G Q S  AG+ + + +GD  +F Y SPY RT+ T+  +++  + + I+  REEPR++EQQFGNFQN+  +  SK ER  FGRFYYR
Sbjct:   82 YVATPDWKVPLTERGRQQSFDAGKELADIVGDGQVFFYYSPYKRTRATVDELLKHINKSQIISTREEPRISEQQFGNFQNVEQVWESKKERHEFGRFYYR 181          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig110.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRP2_9PHAE5.570e-5990.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ54_ECTSI1.140e-5890.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA23_9STRA3.770e-5377.48NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S1XZK9_9STRA1.290e-4056.25Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SR22_9STRA3.440e-3558.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D0Z6_9STRA1.940e-3357.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0SR39_9STRA2.470e-3155.45Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2N3B8_9STRA2.160e-3050.50Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
L1IPB5_GUITC5.220e-2950.00Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S3QIR9_9STRA1.820e-2850.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig110contigC-tenellus_contig110:783..1794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZ54
PFAMsHis_Phos_1
Model size303
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0009987,GO:0010876,GO:0015850,GO:0015918,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0032365,GO:0032366,GO:0033036,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071702
Exons2
Evalue1.87e-59
EggNOG OGs2CMFW@1|root,2QQ8J@2759|Eukaryota
DescriptionHistidine phosphatase superfamily (branch 1)
Cds size303
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.3982382-CDS-C-tenellus_contig110:782..9441680789158.3982382-CDS-C-tenellus_contig110:782..944Choristocarpus tenellus KU2346CDSC-tenellus_contig110 783..944 -
1680789158.4084663-CDS-C-tenellus_contig110:1653..17941680789158.4084663-CDS-C-tenellus_contig110:1653..1794Choristocarpus tenellus KU2346CDSC-tenellus_contig110 1654..1794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig110.1.1prot_C-tenellus_contig110.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig110 783..1794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig110.1.1

>prot_C-tenellus_contig110.1.1 ID=prot_C-tenellus_contig110.1.1|Name=mRNA_C-tenellus_contig110.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=101bp
YVHIPDWKIPLTKKGFQDSRVAGENIKEFIGDKPLFIYTSPYMRTKQTLA
GMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVASKAERARFGRFYYR
*
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mRNA from alignment at C-tenellus_contig110:783..1794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig110.1.1 ID=mRNA_C-tenellus_contig110.1.1|Name=mRNA_C-tenellus_contig110.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1012bp|location=Sequence derived from alignment at C-tenellus_contig110:783..1794- (Choristocarpus tenellus KU2346)
TACGTCCACATCCCGGATTGGAAGATCCCTCTCACCAAGAAAGGGTTTCA AGACTCGCGTGTAGCTGGGGAGAACATCAAGGAGTTCATTGGGGACAAGC CCCTCTTTATTTACACCTCTCCCTACATGCGAACCAAGCAGGTGCAGTCA AGGGTCAGCTAGTGTCGAGTACTCTCAACTGTTTTGTTGTCCTTTTTACT TATTTTTTACCTTTTTTTAAAAATTCAAGTCACTTGGGATTCACTTAAGG ATGGGGGGTTGTAGGGGGTTGCAGGGAGTTGCATGCATTGTCTTGGGTGG AATATATGTTTTCATCTGTGTTGTGTGTCTCTCTGCCTATGGTGTCGCCA TGACTGAGGTCGTAGGCGTGTATGTTGCAGCATTTACATGATAGTAGCAC AATCTCTGGTAATGGCACTTATCTCCAAGACCTCAATTGCATACTGTTGC ATACCATCCAATCAAGGATAATAAGAATGACCAGGGAGTGGATCATTGTA ATATTCAAGGTTGAATGTGCCAAAGCAAGTGGTCTGTGATGGTATGGTAA ATGCTTGTCATCATTCTTTTATTGTTTCATCCCCCTTCTCTCTCTCTCTC TCTCTCTCGCTCTCTCTTTCCCATGTGCCTTCTTGCTTACCCCAGTCACC AACCCAGCCACACAGCCAATTTGTGTCACTGCTTCCTACTCCCGCTGGAA CCTTTTCCGAAGGACCTCTTTTGTTTGTTGTCTGATTGGAGTATTATTGC TTCGTCCTAGCGGTCGCCATTATTTTTTTTGTACCATGTTCTAAAGTGTA GGTTACACACTCCGGAGTGACAAACACGCCTCCGCAATGTCAACGAACAG ACCCTTGCGGGCATGGTGGAGGCGTTTGATACCAACTACATCGTTGGGGT TAGGGAGGAGCCGCGTTTAACCGAGCAGCAGTTTGGAAATTTCCAGAACC TCGCCACGATCGTCGCCTCCAAGGCAGAACGAGCGCGATTTGGACGCTTC TACTACAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig110:783..1794-

>mRNA_C-tenellus_contig110.1.1 ID=mRNA_C-tenellus_contig110.1.1|Name=mRNA_C-tenellus_contig110.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=303bp|location=Sequence derived from alignment at C-tenellus_contig110:783..1794- (Choristocarpus tenellus KU2346)
TACGTCCACATCCCGGATTGGAAGATCCCTCTCACCAAGAAAGGGTTTCA
AGACTCGCGTGTAGCTGGGGAGAACATCAAGGAGTTCATTGGGGACAAGC
CCCTCTTTATTTACACCTCTCCCTACATGCGAACCAAGCAGACCCTTGCG
GGCATGGTGGAGGCGTTTGATACCAACTACATCGTTGGGGTTAGGGAGGA
GCCGCGTTTAACCGAGCAGCAGTTTGGAAATTTCCAGAACCTCGCCACGA
TCGTCGCCTCCAAGGCAGAACGAGCGCGATTTGGACGCTTCTACTACAGG
TGA
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