mRNA_C-tenellus_contig10949.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10949.1.1
Unique NamemRNA_C-tenellus_contig10949.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: D7FWJ6_ECTSI (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B\' beta isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ6_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.480e-44
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQAKAGD 318
            QVAERALFLWNNEHLV++GVLS  YP PLLP +YGPLRERSTRHWN+TVE LA+NVL+MY+D +A  +ERCHQQH AE+ E+ RRR K D HWA LEELAQ KAG+
Sbjct:  466 QVAERALFLWNNEHLVTAGVLSMQYPSPLLPVIYGPLRERSTRHWNTTVEGLAHNVLRMYNDQDAAAFERCHQQHVAEEEERGRRRAKADAHWALLEELAQLKAGE 571
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: A0A6H5J7C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.680e-30
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERC 213
            QVAERALFLWNNEHLV++GVLS  YP PLLP +YGPLRERSTRHWN+TVE LA+NVL+MY+D +A  +ERC
Sbjct:  247 QVAERALFLWNNEHLVTAGVLSMQYPSPLLPVIYGPLRERSTRHWNTTVEGLAHNVLRMYNDQDAAAFERC 317
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: A0A7S2V448_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V448_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.720e-25
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQAK 309
            QVAERALFLWNNE LV+SG LS+ Y   +LP +YGPL   S+ HWNSTVE LA NVLKMY + +   Y+RC  ++   + E+ R+ ++  + WA+LE LA +K
Sbjct:  359 QVAERALFLWNNEQLVNSGCLSRQYASSILPLIYGPLYTHSSGHWNSTVEGLAQNVLKMYMEYDINLYDRCSTEYFRLEEERKRKLEQAQQRWAQLEALANSK 461
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: A0A7S4AV92_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AV92_9STRA)

HSP 1 Score: 100 bits (248), Expect = 6.920e-25
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELA 300
            QV ERALFLWNNEHLV+SG LS+   + +LP +YGPL + S+ HWN+TVE LA NVLKMY + +   Y+RC   +  E+ +  R+   L++ WA +E +A
Sbjct:   27 QVVERALFLWNNEHLVNSGCLSRLNAQAVLPIIYGPLYKNSSGHWNATVEGLAQNVLKMYMEYDLVLYDRCTANYFREEEDAKRKLTALEDRWAAIEAVA 126
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: A0A6S9GHG6_HETAK (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GHG6_HETAK)

HSP 1 Score: 106 bits (264), Expect = 7.120e-25
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQAK 309
            QVAERALFLWNNE LV+SG LS+ Y + LLP +YGPL   S  HWNSTVE LA NVLKMY + +   Y++C   +   + E+ R+ ++ ++ WA+LE +A AK
Sbjct:  318 QVAERALFLWNNEQLVNSGCLSRAYAQSLLPLIYGPLYRHSAGHWNSTVEGLAQNVLKMYMEYDINLYDKCSTDYFKLEEERKRKLEQAEKKWAQLEAMANAK 420
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: A0A6H5L4B6_9PHAE (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.070e-23
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQAK 309
            QVAER LFLWNNEHLVS G  S+ Y   +LP +YGPL + S  HWN+TVE LA NVLKMY + +   Y+R   +H   + E ++R++   + WA LEE A +K
Sbjct:  351 QVAERTLFLWNNEHLVSKGCFSRGYTHSILPVIYGPLHKHSLGHWNNTVEGLAQNVLKMYMEFDIHLYDRVLSEHLKLEAEAAQRKEDACKKWAVLEEKALSK 453
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: A0A6U0JU83_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JU83_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.010e-22
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQA 306
            QV ERALFLWNNEHLV+SG LS+   + +LP +YGPL + S+ HWN+TVE LA NVLKMY + +   Y++C   +  E+ E  R+ + + + W  +E+ A A
Sbjct:   80 QVVERALFLWNNEHLVNSGCLSRLNAQTVLPIIYGPLYKNSSGHWNATVEGLAQNVLKMYMEYDLVLYDKCTTAYFKEEEEAKRKVEAIADRWNAIEDQAAA 181
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: A0A7S3Q6T8_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6T8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.220e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQAKA 312
            QV ERALFLWNNEHLV+SG LS+     +LP +YGPL + S+ HWN+TVE LA NVLKMY + + + Y++C   +  ++ E   +++ +   WA++EE+AQ  A
Sbjct:  473 QVVERALFLWNNEHLVNSGCLSRLNAHQVLPIIYGPLYKNSSGHWNATVEGLAQNVLKMYMEYDLDLYDKCTAAYFKQEEEAKTKQEAVAMRWAQIEEMAQENA 576
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: K3XB75_GLOUD (Serine/threonine protein phosphatase 2A regulatory subunit n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XB75_GLOUD)

HSP 1 Score: 100 bits (248), Expect = 1.670e-22
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQAKA 312
            QV+ER+LFLWNNEHLV++G LS+ +   +LP +YGPL   S  HWN+TVE LA NVLK+Y D +   Y++C + ++ ++  Q+ +    +E W ++E +A  KA
Sbjct:  367 QVSERSLFLWNNEHLVNNGCLSKQHAHLILPVIYGPLHRNSLGHWNTTVEGLAQNVLKLYMDYDMALYDQCAKDYSMKEQSQNEKXXXXEEKWRKIESMAAMKA 470
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BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Match: D0N579_PHYIT (Serine/threonine protein phosphatase 2A regulatory subunit n=38 Tax=Peronosporaceae TaxID=4777 RepID=D0N579_PHYIT)

HSP 1 Score: 99.8 bits (247), Expect = 2.510e-22
Identity = 47/104 (45.19%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVETLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELAQAKA 312
            QV+ER+LFLWNNEHLV++G LS+ +   +LP +YGPL   S  HWN+TVE LA NVLK+Y D +   Y++C ++++ ++   +  + K  E W ++E +A +KA
Sbjct:  386 QVSERSLFLWNNEHLVNNGCLSKQHAHLILPVIYGPLHRNSLGHWNTTVEGLAQNVLKLYMDYDMALYDQCAKEYSLKEQAMADTKNKEQEKWRKIESMAASKA 489
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWJ6_ECTSI1.480e-4473.58Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
A0A6H5J7C6_9PHAE4.680e-3076.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V448_9STRA4.720e-2552.43Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S4AV92_9STRA6.920e-2550.00Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6S9GHG6_HETAK7.120e-2552.43Serine/threonine protein phosphatase 2A regulatory... [more]
A0A6H5L4B6_9PHAE4.070e-2350.49Serine/threonine protein phosphatase 2A regulatory... [more]
A0A6U0JU83_9STRA1.010e-2248.04Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S3Q6T8_9STRA1.220e-2248.08Serine/threonine protein phosphatase 2A regulatory... [more]
K3XB75_GLOUD1.670e-2245.19Serine/threonine protein phosphatase 2A regulatory... [more]
D0N579_PHYIT2.510e-2245.19Serine/threonine protein phosphatase 2A regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10949contigC-tenellus_contig10949:4461..5169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWJ6
PFAMsB56
Model size318
Max annot lvl2759|Eukaryota
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377
Exons2
Evalue2.43e-45
EggNOG OGsKOG2085@1|root,KOG2085@2759|Eukaryota
Descriptionprotein phosphatase regulator activity
Cds size318
COG categoryZ
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.2414665-CDS-C-tenellus_contig10949:4460..46691680789156.2414665-CDS-C-tenellus_contig10949:4460..4669Choristocarpus tenellus KU2346CDSC-tenellus_contig10949 4461..4669 +
1680789156.2605865-CDS-C-tenellus_contig10949:5060..51691680789156.2605865-CDS-C-tenellus_contig10949:5060..5169Choristocarpus tenellus KU2346CDSC-tenellus_contig10949 5061..5169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10949.1.1prot_C-tenellus_contig10949.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10949 4461..5169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10949.1.1

>prot_C-tenellus_contig10949.1.1 ID=prot_C-tenellus_contig10949.1.1|Name=mRNA_C-tenellus_contig10949.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
QVAERALFLWNNEHLVSSGVLSQNYPRPLLPFLYGPLRERSTRHWNSTVE
TLANNVLKMYSDLNAEEYERCHQQHTAEQGEQSRRRKKLDEHWARLEELA
QAKAGD
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mRNA from alignment at C-tenellus_contig10949:4461..5169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10949.1.1 ID=mRNA_C-tenellus_contig10949.1.1|Name=mRNA_C-tenellus_contig10949.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=709bp|location=Sequence derived from alignment at C-tenellus_contig10949:4461..5169+ (Choristocarpus tenellus KU2346)
CAGGTGGCCGAGCGTGCTCTATTTCTTTGGAACAATGAGCACCTGGTGAG
CTCTGGAGTTCTTTCCCAGAACTACCCACGACCACTGTTACCGTTCTTGT
ATGGGCCCTTACGAGAACGCTCTACTAGACATTGGAACTCCACCGTGGAG
ACACTGGCAAACAACGTCCTCAAGATGTACAGTGACCTGAATGCGGAGGA
GTATGAGAGGTGGGAAAATAAATAATAAACAGTGAACAAGGACTAAATAA
CCTCTCCATTTTTTTTTTCATAAAAAGGTTGGGAAGAAAGTTCACTTTAA
AAAAAAAAAAAAATGTTTTCTGGGACTTTTGGGAGATTACTTTTTTGTAG
TCCGAAAGGGCAGTCAGTCATGCGGTTCTCACTTTTTTTTATATGCACGG
TCCGTATGACTTTTTTCTTATAAAAAGGGAAGGAAAAAAAAGAACTTTTG
CTGAAGTGGTGTATTTATTTTTGAAGGAGTTCTACATCTATAATATATAT
ATAGAGAGAGAGAGACCATCCTGAGCAATGAAAAGAAAAAAAATGTAGGC
CTGAGCGTGTCTCCCCCTTGCCCTCGCCCTCCCTCCCACCATCTGTGCAG
GTGCCATCAACAGCACACGGCAGAGCAAGGAGAGCAAAGCAGGCGACGAA
AAAAGCTTGATGAACATTGGGCTCGGCTTGAAGAGCTTGCCCAGGCTAAG
GCAGGGGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10949:4461..5169+

>mRNA_C-tenellus_contig10949.1.1 ID=mRNA_C-tenellus_contig10949.1.1|Name=mRNA_C-tenellus_contig10949.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig10949:4461..5169+ (Choristocarpus tenellus KU2346)
CAGGTGGCCGAGCGTGCTCTATTTCTTTGGAACAATGAGCACCTGGTGAG
CTCTGGAGTTCTTTCCCAGAACTACCCACGACCACTGTTACCGTTCTTGT
ATGGGCCCTTACGAGAACGCTCTACTAGACATTGGAACTCCACCGTGGAG
ACACTGGCAAACAACGTCCTCAAGATGTACAGTGACCTGAATGCGGAGGA
GTATGAGAGGTGCCATCAACAGCACACGGCAGAGCAAGGAGAGCAAAGCA
GGCGACGAAAAAAGCTTGATGAACATTGGGCTCGGCTTGAAGAGCTTGCC
CAGGCTAAGGCAGGGGAT
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