mRNA_C-tenellus_contig1083.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1083.1.1
Unique NamemRNA_C-tenellus_contig1083.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: D7FJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 7.300e-24
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 SNIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVNSNRT-------------------VVIFEYTVVTGDSATDLDY 261
            S+I LDG  PHI  + F G+SNATY GGD +Q+ V F+APVVV+G+P+L LETG +DR+A+WVN+                      +++FEY VVTGDSA DLDY
Sbjct: 1344 SDIALDGSTPHIREIYFAGESNATYQGGDVVQVVVRFSAPVVVSGAPALKLETGVVDRQALWVNTTEFNSSAADNDAVAEEVEGDDYLLLFEYLVVTGDSAGDLDY 1449          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: A0A6H5L133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L133_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.510e-23
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 SNIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVNSNRT-------------------VVIFEYTVVTGDSATDLDY 261
            S+I LDG  PHI  + F G+SN TY GGD +Q+ V F+APVVV+G+P+L LETG +DR+A+WVN+                      +++FEY VVTGDSA DLDY
Sbjct: 1252 SDIALDGSTPHIREIFFAGESNTTYQGGDVVQVVVRFSAPVVVSGAPALKLETGVVDRQALWVNTTEFNSSAADNDAVAEEVEGDDYLLLFEYLVVTGDSAGDLDY 1357          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: A0A3S3QTE0_9GAMM (Tandem-95 repeat protein n=2 Tax=Photobacterium chitinilyticum TaxID=2485123 RepID=A0A3S3QTE0_9GAMM)

HSP 1 Score: 77.4 bits (189), Expect = 1.150e-14
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 SNIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVN-SNRTVVIFEYTVVTGDSATDLDY 261
            +N+R+D V P +  +S    ++  Y  GD+I + V F   V  TGSP LLLETGT DR A + + S  T +IF+YTV TGD A+DLDY
Sbjct:  886 TNVRVDSVAPTVTGVS-ASTADGQYKAGDSISLAVSFDEAVTATGSPRLLLETGTTDRYAAYTSGSGSTALIFQYTVQTGDIASDLDY 972          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: UPI000369D2C4 (S-layer homology domain-containing protein n=1 Tax=Paenibacillus ginsengihumi TaxID=431596 RepID=UPI000369D2C4)

HSP 1 Score: 75.5 bits (184), Expect = 5.390e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 SNIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVNSNRTVVIFEYTVVTGDSATDLDY 261
            S +++D V P +A ++    ++ TY  G  I I V+F+ PV+VTG+P L LETG  DR A + + + T + FEYTV  GDS+TDLDY
Sbjct:  396 SEVKVDAVAPTVAGVT-SPHADGTYKAGTLIPIEVMFSEPVIVTGTPQLTLETGENDRTADFKSIDGTKLTFEYTVQAGDSSTDLDY 481          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: A0A7S4JS32_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JS32_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.430e-14
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 SNIRLDGVQPHIAALSFGGDSN-ATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVN-SNRTVVIFEYTVVTGDSATDLDY 261
            SNI +D  +PHI  +  G D N   Y   D I I + F+ PVVV G+P LLLETG +DR AV+ + +N T + F+YTV  GD A  LDY
Sbjct: 1542 SNIAIDNRKPHIVTI--GSDENPGRYTDDDQISIVITFSLPVVVEGNPILLLETGAVDRHAVFSSQNNETALEFQYTVELGDEANALDY 1628          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: UPI0016805FDF (Ig-like domain-containing protein n=1 Tax=Pseudoalteromonas sp. S16_S37 TaxID=2720228 RepID=UPI0016805FDF)

HSP 1 Score: 69.7 bits (169), Expect = 5.830e-12
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 NIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVNSNRTVVIFEYTVVTGDSATDLDY 261
            N+ +D + P ++++S    ++ TY  GD I I V F+  + VTG+P+L LETG +DR   + +++ +VV F YTV TGD + DLDY
Sbjct:  664 NVLVDTIAPTVSSVS-SSKADGTYKVGDEIAIQVTFSENIAVTGTPTLTLETGDVDRVVNFTSASDSVVTFNYTVQTGDVSGDLDY 748          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: UPI000AEF28D5 (Ig-like domain-containing protein n=1 Tax=Photobacterium proteolyticum TaxID=1903952 RepID=UPI000AEF28D5)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-11
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 SNIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVN-SNRTVVIFEYTVVTGDSATDLDY 261
            +N+R+D V P +  +S    ++  Y  GD I + V F   V VTG+P LLLETGT  R A + + S  T ++F+Y++  GD+++DLDY
Sbjct:  621 TNVRVDSVSPTVTGVS-ASTADGQYNEGDNIALNVSFDEAVTVTGTPRLLLETGTTGRYATYTSGSGSTALVFQYSIQAGDTSSDLDY 707          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: A0A316JGM6_9MICO (C-type lectin domain-containing protein n=1 Tax=Candidatus Aquiluna sp. XM-24bin5 TaxID=2133953 RepID=A0A316JGM6_9MICO)

HSP 1 Score: 68.9 bits (167), Expect = 1.080e-11
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   16 DGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVNSNRTV-VIFEYTVVTGDSATDLDY 261
            D   P + ++S   +SN TY  G  + I V F+  V+VTGSP++LLETG +DR A + + + T  ++FEYTV +GD++ DLDY
Sbjct:  596 DSTAPTVTSVS-SSNSNGTYLRGQVLAIVVNFSESVLVTGSPTVLLETGVLDRTANYTSGSGTSSLVFEYTVQSGDTSADLDY 677          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: A4CY56_SYNPV (VCBS protein n=1 Tax=Synechococcus sp. (strain WH7805) TaxID=59931 RepID=A4CY56_SYNPV)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-11
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 SNIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVN-SNRTVVIFEYTVVTGDSATDLD 258
            +++ +DG QP +  +S    ++ +Y  G  I + V F   VVVTG+P+L LETGTIDR+A++++ S  T + F+YTV  GD++ DLD
Sbjct: 2932 ADLVIDGNQPTVTGVS-STTADGSYGIGSVINLTVTFDEDVVVTGTPTLQLETGTIDRKAIFISGSGSTTLTFQYTVQDGDTSADLD 3017          
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Match: UPI00102CDB3A (DUF4347 domain-containing protein n=1 Tax=Candidatus Magnetaquicoccus inordinatus TaxID=2496818 RepID=UPI00102CDB3A)

HSP 1 Score: 68.6 bits (166), Expect = 1.460e-11
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    4 NIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLLLETGTIDREAVWVN-SNRTVVIFEYTVVTGDSATDLDY 261
            +I LD   P +++++    SN TY  G +I I V F+  V VTG+P L LETG+ DR   +V+ S  T ++F YTV +GDS++DLDY
Sbjct:  635 SITLDHSAPTVSSVT-STSSNGTYYTGQSINITVNFSEAVTVTGTPQLTLETGSTDRSINYVSGSGTTALVFNYTVQSGDSSSDLDY 720          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1083.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJQ0_ECTSI7.300e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L133_9PHAE2.510e-2349.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3S3QTE0_9GAMM1.150e-1447.73Tandem-95 repeat protein n=2 Tax=Photobacterium ch... [more]
UPI000369D2C45.390e-1445.98S-layer homology domain-containing protein n=1 Tax... [more]
A0A7S4JS32_9STRA7.430e-1448.31Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
UPI0016805FDF5.830e-1241.86Ig-like domain-containing protein n=1 Tax=Pseudoal... [more]
UPI000AEF28D51.060e-1140.91Ig-like domain-containing protein n=1 Tax=Photobac... [more]
A0A316JGM6_9MICO1.080e-1144.58C-type lectin domain-containing protein n=1 Tax=Ca... [more]
A4CY56_SYNPV1.090e-1142.53VCBS protein n=1 Tax=Synechococcus sp. (strain WH7... [more]
UPI00102CDB3A1.460e-1144.83DUF4347 domain-containing protein n=1 Tax=Candidat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1083contigC-tenellus_contig1083:935..1808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJQ0
PFAMsCalx-beta,FG-GAP_2
Model size261
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.2e-24
EggNOG OGs28JEB@1|root,2QRTB@2759|Eukaryota
DescriptionFG-GAP repeat
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.8045955-CDS-C-tenellus_contig1083:934..10011680789150.8045955-CDS-C-tenellus_contig1083:934..1001Choristocarpus tenellus KU2346CDSC-tenellus_contig1083 935..1001 -
1680789150.818623-CDS-C-tenellus_contig1083:1076..11741680789150.818623-CDS-C-tenellus_contig1083:1076..1174Choristocarpus tenellus KU2346CDSC-tenellus_contig1083 1077..1174 -
1680789150.8397803-CDS-C-tenellus_contig1083:1712..18081680789150.8397803-CDS-C-tenellus_contig1083:1712..1808Choristocarpus tenellus KU2346CDSC-tenellus_contig1083 1713..1808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1083.1.1prot_C-tenellus_contig1083.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1083 935..1808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1083.1.1

>prot_C-tenellus_contig1083.1.1 ID=prot_C-tenellus_contig1083.1.1|Name=mRNA_C-tenellus_contig1083.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=87bp
SNIRLDGVQPHIAALSFGGDSNATYAGGDTIQIFVLFTAPVVVTGSPSLL
LETGTIDREAVWVNSNRTVVIFEYTVVTGDSATDLDY
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mRNA from alignment at C-tenellus_contig1083:935..1808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1083.1.1 ID=mRNA_C-tenellus_contig1083.1.1|Name=mRNA_C-tenellus_contig1083.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=874bp|location=Sequence derived from alignment at C-tenellus_contig1083:935..1808- (Choristocarpus tenellus KU2346)
TCCAATATTCGTCTTGATGGAGTGCAGCCTCATATTGCTGCCCTCAGCTT TGGGGGGGACAGTAATGCCACCTATGCTGGGGGTGACACGATTCAGGTAT CTCATGGGTTACTAGGTAGTGTATGTGTTCAGGGATATTGCTTATTTCGC TCTGAAGTATACTATTGCAGCTTGAGTGGATGAATGGGTCAGGCAATCAA CTAAAATGATTGAAAACTGTGGGATCTACAGGATGAGACACATCTCTGAA CACTATGACATGCACACAGAGTGAAAGTATCTTAGAGGGTATGAGTCTTG CCCTGTTTGTCCATTTGGGGCTTGGCTTCCCATGGGTTATTTTATGATAT TTTCCCACTTCAAAAGTTTAGGAGTAGTTAAAATGTATACGTTATGAAAC GTGTGTCCAGAATAAGGATATTGACACTTCCTAACCAACACGATAGCCAA AATAACATTAAAATAGTAACATTGACCTTTGGCCCCCCAAATGGACGCAG CTCTACCCTCTAATATACTTTGGCTCCACACTAAGTGCTCATTTAGGCAC ATTCAACTTATACCCCCACTTGCAATTCTGCGTTTTGCATGACCATTACT TTGCTATCCTTCCCCATATCGATTGTGACTGTAGATCTTTGTTCTTTTCA CAGCACCAGTGGTTGTGACAGGATCACCCTCCCTCCTTCTAGAAACGGGC ACAATTGACAGGGAGGCTGTGTGGGTCAACTCGTCCACCTCCTCCTATTC TTTCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCAATGGATGCTACATCAG ATGACAGAAATCGGACAGTAGTCATCTTTGAATACACAGTTGTCACAGGG GATAGTGCCACAGACCTGGACTAT
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Coding sequence (CDS) from alignment at C-tenellus_contig1083:935..1808-

>mRNA_C-tenellus_contig1083.1.1 ID=mRNA_C-tenellus_contig1083.1.1|Name=mRNA_C-tenellus_contig1083.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=261bp|location=Sequence derived from alignment at C-tenellus_contig1083:935..1808- (Choristocarpus tenellus KU2346)
TCCAATATTCGTCTTGATGGAGTGCAGCCTCATATTGCTGCCCTCAGCTT
TGGGGGGGACAGTAATGCCACCTATGCTGGGGGTGACACGATTCAGATCT
TTGTTCTTTTCACAGCACCAGTGGTTGTGACAGGATCACCCTCCCTCCTT
CTAGAAACGGGCACAATTGACAGGGAGGCTGTGTGGGTCAACTCAAATCG
GACAGTAGTCATCTTTGAATACACAGTTGTCACAGGGGATAGTGCCACAG
ACCTGGACTAT
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