prot_C-tenellus_contig9729.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9729.1.1
Unique Nameprot_C-tenellus_contig9729.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length582
Homology
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BLAST of mRNA_C-tenellus_contig9729.1.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 6.900e-7
Identity = 54/127 (42.52%), Postives = 70/127 (55.12%), Query Frame = 0 
Query:   32 ISSSYDAEQLATDI-SCSKGTFSVIWYGEVSLNSTLSLEGGTSLNIRGGDALASIDGEANIPLFDVYDG--ALSIEGLTLRNGNASDTEGGYVQGGAIRVNRGRLSVAGCT-FDSNQAAESGGAIYA 154
            ++S+ DA  LA  I  CS G  +V W GEV +  T+ + GGTSLNI G    A  DG     +F + DG  +L +  +TL NG+ASD       GG I  N+   S++G T F SN A  S GAIYA
Sbjct:   33 VASTEDAAALAASIIGCSNGDIAVAWVGEVVVEETIFVIGGTSLNITGAGPGAIADGGGETQVF-IADGGSSLRLSDMTLSNGSASD-------GGVIFTNQPVSSLSGNTAFISNYADGSKGAIYA 151
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9729.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4F7_9PHAE6.900e-742.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 138..155
e-value: 3.4E-5
score: 21.5
NoneNo IPR availablePANTHERPTHR11319:SF35REPEAT OUTER MEMBRANE PROTEIN, PUTATIVE-RELATEDcoord: 41..237
NoneNo IPR availablePANTHERPTHR11319:SF35REPEAT OUTER MEMBRANE PROTEIN, PUTATIVE-RELATEDcoord: 410..485
coord: 269..428
NoneNo IPR availablePANTHERPTHR11319G PROTEIN-COUPLED RECEPTOR-RELATEDcoord: 41..237
NoneNo IPR availablePANTHERPTHR11319G PROTEIN-COUPLED RECEPTOR-RELATEDcoord: 410..485
coord: 269..428
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..581
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 385..550
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 50..410

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9729contigC-tenellus_contig9729:522..4483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9729.1.1mRNA_C-tenellus_contig9729.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9729 445..4668 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9729.1.1 ID=prot_C-tenellus_contig9729.1.1|Name=mRNA_C-tenellus_contig9729.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=582bp
MRYGCLCLFAGVVNGAQSLALCGNTSSLTYEISSSYDAEQLATDISCSKG
TFSVIWYGEVSLNSTLSLEGGTSLNIRGGDALASIDGEANIPLFDVYDGA
LSIEGLTLRNGNASDTEGGYVQGGAIRVNRGRLSVAGCTFDSNQAAESGG
AIYASSSEVFVENSAFVNSKAGEPGVGTGGGIHVYLGKALIRNSAIYRCF
AGEIGGGAWLKSGDFTVFNTTFVENMAGDKSGTNFVENVETPGRGGGLSV
DRCEGGFYGGPCQIDLNLFQDNFAGEKGGGVVVGGGGVYNNIKIERCTFR
YNSAGKTDPAFDDFPAGDGGAVSVGGGFFVLAINSTFERNLAGGKGGAIV
TSTNSELEVCDSVFSANEARGEGGGAITVGSRSKLEINSSYFVSNYAEDS
GGAIAALSYSTVLLKNGTFHDNYANQDGGVMTAQGLVLVSSGTFGGNVAR
LNGGVFYASENSNFTISGGSFSFNSAKSNGGSLYLGIGSEMLVSNGTFFG
NKALNSGGFVFVNGHFRVTGGTFHNNSAEEGGFICVHSSYASCSGITVEN
HEDFTWSLHNVDDRRWRFGGLQMNLGCLERG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence