prot_C-tenellus_contig963.1.5 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig963.1.5
Unique Nameprot_C-tenellus_contig963.1.5
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length179
Homology
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 2.210e-41
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQADE 109
            NNI++PKENK   KLMY+C+RC Y E+   G+CVYRNNLITTAGNKLDIVQ DV+DDPTLQRSK+AICEKCNYNEAVFFQADE
Sbjct:  131 NNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADE 213          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.510e-30
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQADE 109
            NNIL+PKEN+    L YAC+RC Y EE  Q +CVY NNL+ T   KLDIV  DV++DPTLQRSK  IC++CNY+EAVFFQAD+
Sbjct:    8 NNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADD 89          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI)

HSP 1 Score: 91.3 bits (225), Expect = 1.340e-20
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQA 107
            NNILYP+ENKA+ +L YAC RC + E+ +Q +CVYRN +  TA  +  ++Q DV  DPTL RSK+  C  C + EAVFFQA
Sbjct:   11 NNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQA 89          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS)

HSP 1 Score: 90.1 bits (222), Expect = 3.470e-20
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   22 CPYSSNNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQAD 108
            CP+ S+ +LYPKEN+ + KL+YAC  C Y E    G  +Y+N L    GN L  V + V DDPTL RS++A C+KC +NEAVFFQ+D
Sbjct:    4 CPHDSS-MLYPKENRNERKLLYACRLCRYTEYAP-GQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSD 88          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI)

HSP 1 Score: 87.8 bits (216), Expect = 2.900e-19
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQA 107
            NNILYPKE++ Q  L+YAC  C + +EV +  CVYRN +  +AG +  I+Q DV  DPTL R+KS IC  C + EAVFFQA
Sbjct:   11 NNILYPKEDREQKILLYACRNCDH-QEVAEDNCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQA 89          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: A0A2I4F1N3_JUGRE (DNA-directed RNA polymerase subunit n=38 Tax=Magnoliopsida TaxID=3398 RepID=A0A2I4F1N3_JUGRE)

HSP 1 Score: 87.4 bits (215), Expect = 4.100e-19
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQA 107
            NNILYPKE+K Q  L+YAC  C + E  D   CVYRN +  + G +  ++Q DV  DPTL R+KS  C +CN+ EAVFFQA
Sbjct:   11 NNILYPKEDKEQKILLYACRNCDHQEAADNN-CVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKSVRCAECNHGEAVFFQA 89          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: A0A6J1AX74_9ROSI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6J1AX74_9ROSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.100e-19
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQA 107
            NNILYPKE++ Q  L+YAC  C + E  D   CVYRN +  +AG +  I+Q DV  DPTL R+KS IC  C + EAVFFQA
Sbjct:   11 NNILYPKEDREQKILLYACRNCDHQEVADNN-CVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQA 89          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: UPI00192A156F (DNA-directed RNA polymerases II, IV and V subunit 9A-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A156F)

HSP 1 Score: 87.4 bits (215), Expect = 4.100e-19
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQA 107
            NNILYPKENK Q  L++AC  C + +E+    CVYRN ++ + G +  ++Q DV  DPTL R+K+  C KCN+ E VFFQA
Sbjct:   11 NNILYPKENKEQKTLLFACRNCEH-QEISNDNCVYRNEVLHSVGERTQVLQ-DVAADPTLPRTKTIRCTKCNHPEVVFFQA 89          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: A0A6P4PU27_GOSAR (DNA-directed RNA polymerase subunit n=7 Tax=Gossypium TaxID=3633 RepID=A0A6P4PU27_GOSAR)

HSP 1 Score: 87.0 bits (214), Expect = 5.790e-19
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQA 107
            NNILYPKE++ Q  L+YAC  C + +EV +  CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA
Sbjct:   11 NNILYPKEDREQKILLYACRNCDH-QEVAENNCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKAVICANCKHGEAVFFQA 89          
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Match: A0A2I4DWP4_JUGRE (DNA-directed RNA polymerase subunit n=11 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2I4DWP4_JUGRE)

HSP 1 Score: 86.3 bits (212), Expect = 1.090e-18
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 0
Query:   27 NNILYPKENKAQHKLMYACSRCTYVEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYNEAVFFQA 107
            NNILYPKE+K Q  L+YAC  C + E  D   CVYRN +    G +  ++Q DV  DPTL R+KS  C +CN+ EAVFFQA
Sbjct:   11 NNILYPKEDKDQKILLYACRNCDHQEVADNN-CVYRNEIHHAVGERTQVLQ-DVAADPTLPRTKSVRCTQCNHGEAVFFQA 89          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig963.1.5 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI2.210e-4179.52TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA5.510e-3063.86DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A1Y1IMB2_KLENI1.340e-2054.32DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
B8BUI2_THAPS3.470e-2051.72DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A6P5Z8D8_DURZI2.900e-1954.32DNA-directed RNA polymerase subunit n=2 Tax=Malvac... [more]
A0A2I4F1N3_JUGRE4.100e-1953.09DNA-directed RNA polymerase subunit n=38 Tax=Magno... [more]
A0A6J1AX74_9ROSI4.100e-1954.32DNA-directed RNA polymerase subunit n=2 Tax=Malvac... [more]
UPI00192A156F4.100e-1950.62DNA-directed RNA polymerases II, IV and V subunit ... [more]
A0A6P4PU27_GOSAR5.790e-1953.09DNA-directed RNA polymerase subunit n=7 Tax=Gossyp... [more]
A0A2I4DWP4_JUGRE1.090e-1853.09DNA-directed RNA polymerase subunit n=11 Tax=Mesan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.25.10coord: 64..124
e-value: 6.8E-10
score: 40.3
NoneNo IPR availableGENE3D2.20.25.10coord: 22..63
e-value: 1.3E-12
score: 49.1
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 25..109
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 25..109
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 26..63
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 71..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig963contigC-tenellus_contig963:5313..6744 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig963.1.5mRNA_C-tenellus_contig963.1.5Choristocarpus tenellus KU2346mRNAC-tenellus_contig963 4934..7135 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig963.1.5 ID=prot_C-tenellus_contig963.1.5|Name=mRNA_C-tenellus_contig963.1.5|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=179bp
MMAKVPHPSVNLPPQSPPSSSCPYSSNNILYPKENKAQHKLMYACSRCTY
VEEVDQGACVYRNNLITTAGNKLDIVQADVIDDPTLQRSKSAICEKCNYN
EAVFFQADEVSFCLVLQRKMTRKMTKRERVESVVERWGGETKEGVLLIVD
TLAPSSSAPHGVMVLVHEVAIGHVNIFV*
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