prot_C-tenellus_contig9483.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9483.2.1
Unique Nameprot_C-tenellus_contig9483.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length77
Homology
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.640e-36
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    2 ELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVR 73
            +LIK+GVVEYVDVNEENNCLVGL+D  LT  HTHLEIDPLTL+GVVAGLIPYPHHNQSPRNTYQCAMGKQ R
Sbjct:  691 DLIKQGVVEYVDVNEENNCLVGLADGDLTINHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAR 762          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A7S4DBE3_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE3_HETAK)

HSP 1 Score: 130 bits (328), Expect = 1.600e-34
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0
Query:    3 LIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            L+  GVVEYVDVNEENNC + L + +LTP HTH+EIDPLTL+GVVAGL+PYPHHNQSPRNTYQCAMGKQ   T+A
Sbjct:  250 LLNDGVVEYVDVNEENNCYIALKEEELTPQHTHVEIDPLTLLGVVAGLVPYPHHNQSPRNTYQCAMGKQAMGTVA 324          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.580e-34
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0
Query:    2 ELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            +L++ GVVEYVDVNEENNCL+ LSD  LT  HTHLE+DPLTL+GVVAGLIPYPHHNQSPRNTYQCAMGKQ   T+A
Sbjct:  663 DLLRIGVVEYVDVNEENNCLIALSDADLTERHTHLEVDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIA 738          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A7S2DCI5_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCI5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.510e-34
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = 0
Query:    1 TELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            T+L+K+G+VEY+DVNEENNC+V LS+ +LTP HTHLEIDPLTLMGVV+GLIP+PHHNQSPRNTY CAMGKQ    +A
Sbjct:  496 TDLMKEGIVEYMDVNEENNCMVALSEKELTPEHTHLEIDPLTLMGVVSGLIPFPHHNQSPRNTYTCAMGKQAMGCVA 572          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 132 bits (332), Expect = 3.520e-34
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0
Query:    2 ELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            ELI+ GVVEYVDVNEENNCL+ L+  QLT  HTH+EIDPLT++GVVAGLIPYPHHNQSPRNTYQCAMGKQ   T+A
Sbjct:  661 ELIRCGVVEYVDVNEENNCLIALAQTQLTVKHTHMEIDPLTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVA 736          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.800e-34
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0
Query:    2 ELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            +L+  GVVEYVDVNEENNC + L + +LTP HTHLEIDPLT+MGVVAGLIP+PHHNQSPRNTYQCAMGKQ   T+A
Sbjct:  629 DLLADGVVEYVDVNEENNCFIALKEEELTPSHTHLEIDPLTIMGVVAGLIPFPHHNQSPRNTYQCAMGKQAMGTVA 704          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.530e-34
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 0
Query:    2 ELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            +LI+ GV+EYVDVNEENNCLV L+++ +TP HTH+EIDPLT++GVVAGL+PYPHHNQSPRNTYQCAMGKQ   T A
Sbjct:  519 DLIEDGVIEYVDVNEENNCLVALNESSITPEHTHMEIDPLTILGVVAGLVPYPHHNQSPRNTYQCAMGKQAIGTTA 594          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.930e-34
Identity = 56/76 (73.68%), Postives = 68/76 (89.47%), Query Frame = 0
Query:    2 ELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            +L+++ +VEY+DVNEENNCL+ LSD  LTP HTH+EIDPLT+MGVV+GLIP+PHHNQSPRNTYQCAMGKQ   T+A
Sbjct:  626 DLMREEIVEYIDVNEENNCLIALSDRMLTPEHTHMEIDPLTIMGVVSGLIPFPHHNQSPRNTYQCAMGKQAMGTVA 701          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A7S2UUI3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.310e-33
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0
Query:    1 TELIKKGVVEYVDVNEENNCLVGLSDNQ----LTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAM 68
            T+LI++GVVEYVDVNEENNC V LS  +    LT LHTH+EIDPLTL+GVVA L+PYPHHNQSPRNTYQCAM
Sbjct:   35 TDLIREGVVEYVDVNEENNCFVALSGGREGRGLTALHTHMEIDPLTLLGVVAALVPYPHHNQSPRNTYQCAM 106          
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Match: A0A196SNW2_BLAHN (DNA-directed RNA polymerase subunit beta n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SNW2_BLAHN)

HSP 1 Score: 124 bits (310), Expect = 3.310e-31
Identity = 50/77 (64.94%), Postives = 67/77 (87.01%), Query Frame = 0
Query:    1 TELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGLIPYPHHNQSPRNTYQCAMGKQVRMTLA 77
            T L+++GV+EY+DVNEEN+CL+ ++D  +TP HTH+EIDP++++G+VA LIPYP HNQSPRNTYQCAMGKQ   T+A
Sbjct:  629 TTLVREGVIEYIDVNEENSCLIAVTDKDITPAHTHMEIDPVSILGIVASLIPYPDHNQSPRNTYQCAMGKQAIGTIA 705          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9483.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE5.640e-3687.50DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A7S4DBE3_HETAK1.600e-3476.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A835Z565_9STRA2.580e-3478.95DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S2DCI5_9STRA3.510e-3475.32DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
I2CNY0_NANGC3.520e-3478.95DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A6U4JF41_9STRA4.800e-3476.32DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S3H3I2_9STRA6.530e-3475.00DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S2WH87_9STRA8.930e-3473.68DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A7S2UUI3_9STRA3.310e-3376.39DNA-directed RNA polymerase (Fragment) n=1 Tax=Fib... [more]
A0A196SNW2_BLAHN3.310e-3164.94DNA-directed RNA polymerase subunit beta n=1 Tax=B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 46..77
e-value: 2.8E-12
score: 48.5
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 2..32
e-value: 5.5E-7
score: 30.2
NoneNo IPR availablePANTHERPTHR20856:SF29DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 3..73
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..72
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9483contigC-tenellus_contig9483:4479..4709 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9483.2.1mRNA_C-tenellus_contig9483.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9483 4479..4709 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9483.2.1 ID=prot_C-tenellus_contig9483.2.1|Name=mRNA_C-tenellus_contig9483.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=77bp
TELIKKGVVEYVDVNEENNCLVGLSDNQLTPLHTHLEIDPLTLMGVVAGL
IPYPHHNQSPRNTYQCAMGKQVRMTLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007647RNA_pol_Rpb2_5
IPR015712DNA-dir_RNA_pol_su2