prot_C-tenellus_contig9220.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9220.1.1
Unique Nameprot_C-tenellus_contig9220.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length392
Homology
BLAST of mRNA_C-tenellus_contig9220.1.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 2.380e-7
Identity = 43/190 (22.63%), Postives = 86/190 (45.26%), Query Frame = 0
Query:  108 RAKKAWQLLLIMLQGRALHVFIAAGSPSAGWRALDAAFRPKTRQKARIVRQELDRLTLDDRKDPSPGLAELSRLTTRLESMGEVIPEETKVDTILNKLGENYSQVKSFIDFGKTKTVKQV--EDMVVARFKDLQAADK---GKSGGNGHALAVSTGRRTVGRK----GRGKGRVICFMCGKDGHIKYDCP 288
            R ++A+ +L++ +    L++  +  +P   W  L   F   T      ++++  R  + ++   +  L  +  LT +L ++G V+ EE ++ T+L  L  +Y+ + + ++        Q   + ++    K +   D      SGG   A++    R   GR       G+    C+ CGK+GHIK +CP
Sbjct:   57 RKERAFSMLVLNVSTPQLYLITSCQTPKEAWDMLKGHFERDTLANKLFLKKKYFRCEMKEKDSLNDHLKRMKELTDQLRAIGAVVEEEDQIVTLLGSLPPSYATIVTALETKMDNLTLQFVQQALINEEQKRVNVNDDYSVATSGGGVSAMSTQVSREMQGRSKVVGAEGQSSWKCYKCGKEGHIKRNCP 246          
BLAST of mRNA_C-tenellus_contig9220.1.1 vs. uniprot
Match: A0A6D2JMB2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JMB2_9BRAS)

HSP 1 Score: 62.4 bits (150), Expect = 9.720e-7
Identity = 69/271 (25.46%), Postives = 114/271 (42.07%), Query Frame = 0
Query:   41 LALHGPDIICGGSVWAVDVELRQRLSAPNPSSSXXXGEGDEVAATSAP----SVPVVAPADMADDLRLATLRAKKAWQLLL--IMLQGRALHVFIAAGSPSAGWRALDAAFRPKTRQKARIVRQELDRLTLDDRKDPSPGLAELSRLTTRLESMGEVIPEETKVDTILNKLGENYSQVKSFIDFG---KTKTVKQVEDMVVARFKDLQAADKGKSGGNGHALAVSTGRRTVGRKGRGK----GRVICFMCGKDGHIKYDCPYLDWDRHASA 298
            ++L G  I+  GS+           SA +P +    G+G  V A S      S P   P   A DLR+  L       L+L  +M Q  AL +          WRAL+  ++ K+      ++Q+     +D+ K     L    +L + L S+   I +E +   +L  L   Y  +   + +G   +T TV++V+    A+  +L+           H   +  G+ +   K +GK    G+  CF+CGK+GH K +CP  D  +   A
Sbjct:   87 ISLPGRRILVCGSI--------SSWSARDPRARRRSGKGFTVTAKSEKAEEGSEPRKDPKKAAKDLRVRNLIGTFLSDLILRKVMSQPTALDM----------WRALEEEYQAKSLPNRIYLKQQFASFRMDESKTMEENLDTFLKLISDLASLQISISDEDQAIQLLTSLPPAYEPLVHTLKYGTGKETLTVREVKASAYAKEAELR-----------HKGMLKRGKSSAEGKSKGKVNKAGKSACFICGKEGHWKRECPNRDQRKSGEA 328          
BLAST of mRNA_C-tenellus_contig9220.1.1 vs. uniprot
Match: UPI00142E8FD0 (uncharacterized protein LOC103850617 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E8FD0)

HSP 1 Score: 58.9 bits (141), Expect = 1.200e-5
Identity = 42/176 (23.86%), Postives = 81/176 (46.02%), Query Frame = 0
Query:  138 WRALDAAFRPKTRQKARIVRQELDRLTLDDRKDPSPGLAELSRLTTRLESMGEVIPEETKVDTILNKLGENYSQVKSFIDFGKTKTVKQVEDMVVARF-KDLQAADKG---KSGGNGHALAVSTGR--RTVGRK-GRGKGRVI------------------CFMCGKDGHIKYDCP 288
            W+AL+A ++ KT      ++Q      + ++K     L    +L   L S+  +IP+E +   +L+ L   Y  +   + +G ++    ++++  + + K+ +  +KG   KS   G  L  S G+  +  G+K GRG+ +                    C++CG++GH K DCP
Sbjct:   99 WKALEADYQTKTLPNRIYLKQSFASFKMSEQKSIEENLDGFLKLVDDLASLNIIIPDEDQAIQVLSSLPPQYDSLVHTLKYGNSRETLTLKEVTTSAYSKEAELREKGLVGKSTSAGEGLMASQGKGDKYQGKKQGRGRSKSRDNGSRKGSRSQTPAKPRECWVCGREGHFKRDCP 274          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9220.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0S7KIW8_9TELE2.380e-722.63POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A6D2JMB2_9BRAS9.720e-725.46Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI00142E8FD01.200e-523.86uncharacterized protein LOC103850617 isoform X1 n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 273..289
e-value: 0.0061
score: 24.9
coord: 311..327
e-value: 3.2
score: 8.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 274..288
score: 10.296
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 109..231
e-value: 2.0E-12
score: 47.1
NoneNo IPR availableGENE3D4.10.60.10coord: 254..330
e-value: 3.6E-8
score: 35.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..362
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 258..290

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9220contigC-tenellus_contig9220:770..1945 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9220.1.1mRNA_C-tenellus_contig9220.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9220 536..2497 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9220.1.1 ID=prot_C-tenellus_contig9220.1.1|Name=mRNA_C-tenellus_contig9220.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=392bp
MSTSSTIEITNLPTFAGHLGEDFFPFVVRAQAALGVYDCELALHGPDIIC
GGSVWAVDVELRQRLSAPNPSSSSSSGEGDEVAATSAPSVPVVAPADMAD
DLRLATLRAKKAWQLLLIMLQGRALHVFIAAGSPSAGWRALDAAFRPKTR
QKARIVRQELDRLTLDDRKDPSPGLAELSRLTTRLESMGEVIPEETKVDT
ILNKLGENYSQVKSFIDFGKTKTVKQVEDMVVARFKDLQAADKGKSGGNG
HALAVSTGRRTVGRKGRGKGRVICFMCGKDGHIKYDCPYLDWDRHASAPS
ILGEDDGQGGRCVRCTGLGHEESECPLTFRVRERTRRPSGRGTRQRARMI
PTTNPSPPNDSREVEDISSRLDKLEGFIRSSYFGDIERFSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf