prot_C-tenellus_contig9177.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig9177.1.1
Unique Name	prot_C-tenellus_contig9177.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	219

Homology

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 5.770e-130
Identity = 191/218 (87.61%), Postives = 206/218 (94.50%), Query Frame = 0

Query:    1 MKSAVMAVACAAGAQAFVAPSAFNGASLATASKPSTAMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKSA MA+ACAA A AFVAPSAFNGA++AT +K S+AMKMSFESEIGAQPPLGF+DPLGLLADADQERFERLRYVE+KHGRI+MLA+AGHL  QN RLPGMLSNSANLSFADMPNGVAALSKIPP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASY+FN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 366 bits (939), Expect = 6.220e-127
Identity = 189/218 (86.70%), Postives = 204/218 (93.58%), Query Frame = 0

Query:    1 MKSAVMAVACAAGAQAFVAPSAFNGASLATASKPSTAMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKSAVMAVACAA A  F  PSAFNGA+L T++K  +AMKMSFESEIGAQ PLGF+DPLGLLADADQERFERLRYVE+KHGRI+MLA+AGHL  QNTRLPGMLSNSANLSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFT+GGNPF +SWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASY+FN
Sbjct:    1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 350 bits (898), Expect = 8.870e-121
Identity = 182/212 (85.85%), Postives = 194/212 (91.51%), Query Frame = 0

Query:    7 AVACAAGAQAFVAPSAFNGASLATASKPSTAMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            A+ACAA A     PSAFNGA+L+T +K S+AMKMSFESEIGAQ PLGF+DPLGLLADADQERFERLRYVE+KHGRI+MLA+AGHL  QNTRLPGMLSNSANLSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDF IGGNPFASSWD+MS ETQASKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASY+FN
Sbjct:    1 AIACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 2.540e-120
Identity = 173/198 (87.37%), Postives = 190/198 (95.96%), Query Frame = 0

Query:   21 SAFNGASLATASKPSTAMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            SAFNGA++AT++K S+AMKMSFESEIGAQPPLGF+DPLGLLADADQERFERLRYVE+KHGRI+MLA+AGHL  QN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 345 bits (885), Expect = 1.010e-118
Identity = 180/218 (82.57%), Postives = 197/218 (90.37%), Query Frame = 0

Query:    1 MKSAVMAVACAAGAQAFVAPSAFNGASLATASKPSTAMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKSA+MAVA AA       PSAFNGA+L T++K S+AMKMSFESEIGAQ PLGF+DPLGLL DADQ+ FERLRYVE+K GRI+MLA+AGHL  QN RLPGMLSNSANLSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFT+GGNPFASSWDAMS ETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct:    1 MKSAIMAVASAA--PGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 2.640e-118
Identity = 173/197 (87.82%), Postives = 188/197 (95.43%), Query Frame = 0

Query:   22 AFNGASLATASKPSTAMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            AFNGA++AT +K S+AMKMSFESEIGAQPPLGF+DPLGLL DADQERFERLRYVE+KHGRI+MLA+AGHL  QNTRLPGMLSNSANLSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFT+GGNPF SSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 5.450e-115
Identity = 163/181 (90.06%), Postives = 174/181 (96.13%), Query Frame = 0

Query:   38 MKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKMSFESEIGAQPPLGF+DPLGLL DADQERFERLRYVE+KHGRI+MLA+AGHL  QNTRLPGMLSNSANLSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFT+GGNPF SSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 328 bits (842), Expect = 1.090e-112
Identity = 162/182 (89.01%), Postives = 173/182 (95.05%), Query Frame = 0

Query:   37 AMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            AMKMSFE EIGAQ PLGF+DPLGLLADADQERFERLRYVE+KHGRI+MLA+AGHL  QN RLPGMLSNSANLSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFT+GGNPFASSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct:    1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 311 bits (796), Expect = 3.140e-105
Identity = 163/213 (76.53%), Postives = 180/213 (84.51%), Query Frame = 0

Query:    6 MAVACAAGAQAFVAPSAFNGASLATASKPSTAMKMSFESEIGAQPPLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MA+ACAA A        FNGA+LAT++K S+AMKMSFESEIGAQPP+GF+DPLGL+ADADQERF+RLRYVEIKHGRI+MLAV GH+  QNTRLPGMLS   NL+FAD PNGVAA SKIPPLG  QI+  IG  EL V+K VEGSFPGD T GGN F S+WD MSEETQASKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:    1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

[Close]

BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 1.400e-102
Identity = 156/206 (75.73%), Postives = 167/206 (81.07%), Query Frame = 0

Query:   38 MKMSFESEIGAQPPLGFFDPLGLLADA-------------------------DQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPGMLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSFPGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKMSFESE+GAQPPLGFFDPLGLL D                          DQERF+RLRYVE+KHGRISMLAVAGHLVAQN R PG LS  A L+FADMPNGVAA+SKIPPLGLAQIVAFIGFLEL VMKNVEGSFPGD TIGGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A Y+FN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9177.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	5.770e-130	87.61	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPB_MACPY	6.220e-127	86.70	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
FCPF_MACPY	8.870e-121	85.85	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
A0A6H5JHT6_9PHAE	2.540e-120	87.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPC_MACPY	1.010e-118	82.57	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
D8LNK6_ECTSI	2.640e-118	87.82	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JDS8_9PHAE	5.450e-115	90.06	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPD_MACPY	1.090e-112	89.01	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPE_MACPY	3.140e-105	76.53	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
A0A6H5KBS3_9PHAE	1.400e-102	75.73	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 46..198 e-value: 8.9E-33 score: 114.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 38..213 e-value: 2.0E-31 score: 111.2
None	No IPR available	PANTHER	PTHR21649:SF89	CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC	coord: 14..203
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..218
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..31
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..31
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 34..208
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 14..203

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9177	contig	C-tenellus_contig9177:4467..5453 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9177.1.1	mRNA_C-tenellus_contig9177.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig9177 3878..5490 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig9177.1.1 ID=prot_C-tenellus_contig9177.1.1|Name=mRNA_C-tenellus_contig9177.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=219bp
MKSAVMAVACAAGAQAFVAPSAFNGASLATASKPSTAMKMSFESEIGAQP
PLGFFDPLGLLADADQERFERLRYVEIKHGRISMLAVAGHLVAQNTRLPG
MLSNSANLSFADMPNGVAALSKIPPLGLAQIVAFIGFLELAVMKNVEGSF
PGDFTIGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLVGASYSFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln