prot_C-tenellus_contig9079.5.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig9079.5.1
Unique Name	prot_C-tenellus_contig9079.5.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	188

Homology

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: Q94LG0_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q94LG0_ORYSJ)

HSP 1 Score: 77.8 bits (190), Expect = 2.580e-13
Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 0

Query:    4 KYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARIDNRPTKSSPRAELCFMMGVAPLNKYPSHTYRILLSRTGRHVMRRDITMWDSNLHDDT 157
            K G+   HT+P  PQ NGVAER    +  K+  +   AR+ K    WAE  + +  L N +P+   ++  TP E+W  +PAD +Q+ ++G   YA +DN   K  PRA  C  +G     K     Y++    T +  MRR +    S + +D+
Sbjct:  570 KEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNK--RFWAEAANTACYLINRSPS-IPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNG--KLEPRAIKCLFLGYGSGVK----RYKLWNPETNKTFMRRSVVFNKSVMFNDS 714

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: Q10FH9_ORYSJ (Integrase core domain containing protein n=10 Tax=Oryza TaxID=4527 RepID=Q10FH9_ORYSJ)

HSP 1 Score: 74.7 bits (182), Expect = 3.000e-12
Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 0

Query:    4 KYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARIDNRPTKSSPRAELCFMMG----VAPLNKYPSHTYRILLSRTGRHVMRRDITMWDSNLHDD 156
            K G+   HT+P  PQ NGVAER    +  K+  +   AR+ K    WAE  + +  L N +P+   ++  TP E+W  +PAD +Q+ ++G   YA +DN   K  PRA  C  +G    V     +   T +  +SR    V+  +  M++ +L  D
Sbjct:  570 KEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNK--RFWAEAANTACYLINRSPS-IPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNG--KLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRN---VIFNEFVMFNDSLPTD 718

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: Q2QP43_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QP43_ORYSJ)

HSP 1 Score: 72.0 bits (175), Expect = 2.510e-11
Identity = 47/154 (30.52%), Postives = 77/154 (50.00%), Query Frame = 0

Query:    4 KYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARIDNRPTKSSPRAELCFMMGVAPLNKYPSHTYRILLSRTGRHVMRRDITMWDSNLHDDT 157
            K G+   HT+P  PQ NGVA+R    +  ++  L   AR+ K    WAE  + +  L N +P+   ++  TP E+W  +PAD +Q+ ++G   YA +DN   K  PRA  C  +      K     Y++   +T +  M R +   +S + +D+
Sbjct:  362 KEGIVRHHTIPYTPQQNGVAKRMNRTIISEARCLLSNARMNK--RFWAEAANTACYLINRSPS-IPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNG--KLEPRAIKCLFLSYGSGVK----GYKLWNPQTNKTFMSRSVVFNESIMFNDS 506

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: X1X8M7_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X8M7_ACYPI)

HSP 1 Score: 70.9 bits (172), Expect = 5.980e-11
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query:    1 MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARI 100
            +LDK+G++HE +VP  PQ NG AER +  + E +  + Y   L K  TLWAE ++ +    N        +G TP+ELW     D+  + I+GS  YA I
Sbjct:   59 LLDKFGIKHETSVPYTPQQNGKAERSMRTIVEAARTMVYSKNLSK--TLWAEAVNTAVYTINRTGNTGQ-EGKTPYELWFNKTPDINNLKIFGSEVYAHI 155

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: J9LCG1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LCG1_ACYPI)

HSP 1 Score: 70.9 bits (172), Expect = 6.460e-11
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query:    1 MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARI 100
            +LDK+G++HE +VP  PQ NG AER +  + E +  + Y   L K  TLWAE ++ +    N        +G TP+ELW     D+  + I+GS  YA I
Sbjct:  577 LLDKFGIKHETSVPYTPQQNGKAERSMRTIVEAARTMVYSKNLSK--TLWAEAVNTAVYTINRTGNTGQ-EGKTPYELWFNKTPDINNLKIFGSEVYAHI 673

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: X1XQX4_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XQX4_ACYPI)

HSP 1 Score: 69.7 bits (169), Expect = 1.590e-10
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query:    1 MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARI 100
            +LDK+G++HE +VP  PQ NG AE+ +  + E +  + Y   L K  TLWAE ++ +    N        +G TP+ELW     D+  + I+GS  YA I
Sbjct:  558 LLDKFGIKHETSVPYTPQQNGKAEKSMRTIVEAARTMVYSKNLSK--TLWAEAVNTAVYTINRTGNTGQ-EGKTPYELWFNKTPDINNLKIFGSEVYAHI 654

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: A0A0V1HHE3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HHE3_9BILA)

HSP 1 Score: 65.5 bits (158), Expect = 2.110e-10
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 0

Query:    1 MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWG 93
             L + G+RHE T+P APQ NGVAER    + EK+  +   A L  D  LWAE +  +N L N  P  A +  +TP E W E   ++  + ++G
Sbjct:   29 FLARKGIRHERTIPEAPQQNGVAERINRTLVEKARTMLIDANLSPD--LWAEAVGTANYLQNRCPIKA-LQKMTPEEAWSERKPNLAHLKVFG 118

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: X1WT66_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WT66_ACYPI)

HSP 1 Score: 67.8 bits (164), Expect = 7.720e-10
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 0

Query:    1 MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARI 100
            +LDK+G++HE +VP  PQ N  AER +  + E +  + Y   L K  TLWAE ++ +    N        +G TP+ELW     D+  + I+GS  YA I
Sbjct: 1089 LLDKFGIKHETSVPYTPQQNRKAERSMRTIVEAARTMVYSKNLSK--TLWAEAVNTAVYTINRTGNTGQ-EGKTPYELWFNKTPDINNLKIFGSEVYAHI 1185

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: X1WT18_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WT18_ACYPI)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-9
Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = 0

Query:    1 MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARIDNRPT-KSSPRAELCFMMGVAPLNKYPSHT--YRILLSRTGRHVMRRDITMWD 150
            +L KYG+RH+ TVP  P+ NG  ER    + E +  +     L  D +LWAE ++ +    N   T +++   +P+EL++++  D+  + ++G+  Y  I  +   K  P++E    +G      Y ++T  YR+  S+T R  + RDI   D
Sbjct:   87 ILQKYGIRHQLTVPYTPEQNGKVERENRTIVESARTMICAKNL--DVSLWAEAVNTAVYTLNRTGT-SSVKNCSPYELYYKVMPDIKHLRVFGTVVYTHIPKQKRQKWDPKSEKGIFVG------YSNNTKGYRVYYSKTNRISVCRDIIFED 230

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BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Match: X1WKA3_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WKA3_ACYPI)

HSP 1 Score: 67.0 bits (162), Expect = 1.110e-9
Identity = 45/153 (29.41%), Postives = 78/153 (50.98%), Query Frame = 0

Query:    1 MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLWAEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARIDNRPT-KSSPRAELCFMMGVAPLNKYPSHT--YRILLSRTGRHVMRRDITMWD 150
            +L KYG+RH+ TVP  P+ NG  ER    + E +  +     L  D  LWAE ++ +    N   T +++   +P+EL++++  D+  + ++G+  Y  I  +   K  P++E    +G      Y ++T  YR+  S+T R  + RDI   D
Sbjct:  200 ILQKYGIRHQLTVPYTPEQNGKVERENRTIVESARTMICAKNL--DVLLWAEAVNTAVYTLNRTGT-SSVKNCSPYELYYKVMPDIKHLRVFGTVVYTHIPKQKRQKWDPKSEKGIFVG------YSNNTKGYRVYYSKTNRISVSRDIIFED 343

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9079.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Q94LG0_ORYSJ	2.580e-13	32.47	Retrotransposon protein, putative, Ty1-copia subcl...	[more]
Q10FH9_ORYSJ	3.000e-12	31.85	Integrase core domain containing protein n=10 Tax=...	[more]
Q2QP43_ORYSJ	2.510e-11	30.52	Retrotransposon protein, putative, Ty1-copia subcl...	[more]
X1X8M7_ACYPI	5.980e-11	38.00	Integrase catalytic domain-containing protein n=1 ...	[more]
J9LCG1_ACYPI	6.460e-11	38.00	Uncharacterized protein n=1 Tax=Acyrthosiphon pisu...	[more]
X1XQX4_ACYPI	1.590e-10	37.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A0V1HHE3_9BILA	2.110e-10	38.71	Retrovirus-related Pol polyprotein from transposon...	[more]
X1WT66_ACYPI	7.720e-10	37.00	Uncharacterized protein n=1 Tax=Acyrthosiphon pisu...	[more]
X1WT18_ACYPI	1.070e-9	29.41	Integrase catalytic domain-containing protein n=1 ...	[more]
X1WKA3_ACYPI	1.110e-9	29.41	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..91 e-value: 2.4E-8 score: 35.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..83 score: 11.393
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..86

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9079	contig	C-tenellus_contig9079:4981..5544 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9079.5.1	mRNA_C-tenellus_contig9079.5.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig9079 4849..5775 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig9079.5.1 ID=prot_C-tenellus_contig9079.5.1|Name=mRNA_C-tenellus_contig9079.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=188bp
MLDKYGVRHEHTVPGAPQYNGVAERRIALVWEKSLVLRYGARLEKDGTLW
AEVMSHSNDLTNMAPTPANIDGVTPWELWHELPADVTQIPIWGSCGYARI
DNRPTKSSPRAELCFMMGVAPLNKYPSHTYRILLSRTGRHVMRRDITMWD
SNLHDDTRHQSSGLPLWRGEEFFPVIGRGLRELLGIC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf