prot_C-tenellus_contig8801.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig8801.1.1
Unique Name	prot_C-tenellus_contig8801.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	141

Homology

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BLAST of mRNA_C-tenellus_contig8801.1.1 vs. uniprot
Match: D7FYJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.910e-25
Identity = 59/96 (61.46%), Postives = 67/96 (69.79%), Query Frame = 0

Query:   45 PVKQNHAKRPSKINIADFYGNGEDEEDEEELTVSFDGLTREMLKAQLAEAGTHTEDGVLRPQASQERDQQRLAHLVKVGSLTSALRGKGVASSRRR 140
            P  Q   KR S  NIADFYG GE ++DEE    S D   + +L  Q AE GTHTEDG LRPQAS ERDQQ+LAHLV+VG L +ALRGKGV S +RR
Sbjct:  837 PKAQKPKKRASATNIADFYGGGESDDDEEGTGYSMDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGVTSGKRR 932

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BLAST of mRNA_C-tenellus_contig8801.1.1 vs. uniprot
Match: A0A6H5K8A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.230e-25
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0

Query:   45 PVKQNHAKRPSKINIADFYGNGEDEEDEEELTVSFDGLTREMLKAQLAEAGTHTEDGVLRPQASQERDQQRLAHLVKVGSLTSALRGKGVASSRRR 140
            P+ Q   KR S  NIADFYG GE + DEE+     D   + +L  Q  EAGTHTEDG LRPQAS ERDQQ+LAHLV+VG L +ALRGKG  S +RR
Sbjct:   83 PMAQKSKKRASATNIADFYGGGESD-DEEKEGFGMDPYNKGVLSGQFPEAGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGGTSGKRR 177

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig8801.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig8801.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FYJ5_ECTSI	2.910e-25	61.46	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K8A6_9PHAE	3.230e-25	59.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..119
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..28
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 29..140
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..28

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig8801	contig	C-tenellus_contig8801:4410..6064 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig8801.1.1	mRNA_C-tenellus_contig8801.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig8801 2649..6171 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig8801.1.1 ID=prot_C-tenellus_contig8801.1.1|Name=mRNA_C-tenellus_contig8801.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=141bp
MPTAMATATATATAAATAAATAAATAVAVAVAVGGGEGNKVVVTPVKQNH
AKRPSKINIADFYGNGEDEEDEEELTVSFDGLTREMLKAQLAEAGTHTED
GVLRPQASQERDQQRLAHLVKVGSLTSALRGKGVASSRRR*