prot_C-tenellus_contig8776.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8776.1.1
Unique Nameprot_C-tenellus_contig8776.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length106
Homology
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BLAST of mRNA_C-tenellus_contig8776.1.1 vs. uniprot
Match: A0A6H5LDH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.470e-31
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 0 
Query:    5 ALMTIKGFPTSLPEAEIRGLLETIGPVDAFECEIDGASLTCRCRYAKEEDTVKAKKGFHDLEMGEMTLQVEVEE 78
            A+MTIKGFP+SLPEAEI+GLLETIG VD F C +DG SLTC CRY+ ++DT KAKKGFHDLEMGEMTL+V+VEE
Sbjct:    3 AMMTIKGFPSSLPEAEIKGLLETIGQVDMFRCSVDGDSLTCTCRYSTDDDTAKAKKGFHDLEMGEMTLKVDVEE 76
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BLAST of mRNA_C-tenellus_contig8776.1.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.950e-28
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0 
Query:    3 ESALMTIKGFPTSLPEAEIRGLLETIGPVDAFECEIDGASLTCRCRYAKEEDTVKAKKGFHDLEMGEMTLQVEVEE 78
            ES     +GFP+SLPEAEI+GLLETIG VD F C +DG SLTC CRY+ ++DT KAKKGFHDLEMGEMTL+V+VEE
Sbjct: 1627 ESRQSVEEGFPSSLPEAEIKGLLETIGQVDIFRCNVDGDSLTCTCRYSTDDDTAKAKKGFHDLEMGEMTLKVDVEE 1702
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8776.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDH7_9PHAE1.470e-3177.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTD9_ECTSI2.950e-2871.05RNA-binding region-containing protein (RNP-1) n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8776contigC-tenellus_contig8776:5039..5746 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8776.1.1mRNA_C-tenellus_contig8776.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8776 4724..5837 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8776.1.1 ID=prot_C-tenellus_contig8776.1.1|Name=mRNA_C-tenellus_contig8776.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
MSESALMTIKGFPTSLPEAEIRGLLETIGPVDAFECEIDGASLTCRCRYA
KEEDTVKAKKGFHDLEMGEMTLQVEVEEPLRERRRSSRRDRSVYITGRYE
IKDIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf