prot_C-tenellus_contig877.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig877.1.1
Unique Nameprot_C-tenellus_contig877.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length356
Homology
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BLAST of mRNA_C-tenellus_contig877.1.1 vs. uniprot
Match: D8LGM9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM9_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 4.130e-41
Identity = 189/353 (53.54%), Postives = 216/353 (61.19%), Query Frame = 0 
Query:    2 AQADGQRELEQIHLKGLRVNDEDAEALSNALISSGAVVRSISLASNDIGDRGAAALARLLQDEP-GYRCMLSSXXXXXXXXXXXXXXXXSKRIRNNTTLTTLDLSSNPLGPSGGLHLAEASWLMLKENFTLEALVVNNTEMTETGFIALISILREGNNTVRELSIGGQLLHSREEVAVRHMARMLETPPCMIRKLDLSKSSIGDEGASLLRAALHRHPTLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQKFASLESGRFALVGVSTDVKVFVVDGVYQAAEK 353
            A A G+ +L+ I L+GL+V DED E +  A+ISSG  +R+IS+ASNDIGD G  +LARLL DEP  Y  +LSS                ++R+R                                               TE GF A++++LREGNNTVRELSIG QLL SREEVA  H++R LETPP M+R LDLS   IGDEGA +LR AL  HPT+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            L++F  L  GRFALVGV  DV+ FVVDGVY AAEK
Sbjct:   26 AVAVGEVQLDTIRLEGLQVTDEDVEKIVGAVISSGLAIRNISVASNDIGDAGVGSLARLLDDEPPSYSSVLSSLDLRGNSIGSKGCQLLTERLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXTEAGFTAVLAVLREGNNTVRELSIGSQLLRSREEVAACHVSRTLETPPYMLRLLDLSGCGIGDEGAYVLRGALTGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAEGMECNASVERLFVWGNHFGQASLKRFGGLGGGRFALVGVFLDVQPFVVDGVYHAAEK 374
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BLAST of mRNA_C-tenellus_contig877.1.1 vs. uniprot
Match: A0A8B7AHV8_ORYAF (Ribonuclease inhibitor n=1 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B7AHV8_ORYAF)

HSP 1 Score: 62.8 bits (151), Expect = 3.500e-7
Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 0 
Query:   39 VRSISLASNDIGDRGAAALARLLQDEPGYRCMLSSXXXXXXXXXXXXXXXXSKRIRNNTTLTTLDLSSNPLGPSGGLHLAEASWLMLKENFTLEALVVNNTEMTETGFIALISILREGNNTVRELSIGGQLLHSREEVAVRHMARMLETPPCMIRKLDLSKSSIGDEGASLLRAALHRHPTLRV 222
            ++ +SLA N++GDRGA  L   L+ EPG  C L S                S  +  N +L  L +S+N LG +G   L +A   + +   TL  L + + ++T+ G  AL S+L   N ++REL +    +    +  V  +A  L  P C + +L L    + +E    L+      P+LR+
Sbjct:  281 LKELSLAGNELGDRGAQLLCEALR-EPG--CRLESLWVKSCGFTDACCPNFSSMLAQNKSLLELQMSTNRLGDAGVRQLCQA---LGQPGATLRMLWLGDCDVTDDGCSALASLLLS-NRSLRELDLSNNCMG---DPGVLKLADSLRQPDCALEQLVLYDIYLTEEVDDHLKTLEDSKPSLRI 454
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig877.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM9_ECTSI4.130e-4153.54Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A8B7AHV8_ORYAF3.500e-728.80Ribonuclease inhibitor n=1 Tax=Orycteropus afer af... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 245..272
e-value: 0.21
score: 20.7
coord: 36..63
e-value: 0.11
score: 21.7
coord: 96..127
e-value: 0.2
score: 20.7
coord: 273..300
e-value: 7.0E-4
score: 28.9
coord: 128..155
e-value: 18.0
score: 8.3
coord: 189..216
e-value: 5.3
score: 12.0
coord: 68..95
e-value: 4.7
score: 12.4
coord: 7..34
e-value: 88.0
score: 3.4
coord: 217..244
e-value: 0.0016
score: 27.7
NoneNo IPR availablePANTHERPTHR24106NACHT, LRR AND CARD DOMAINS-CONTAININGcoord: 190..327
coord: 9..120
NoneNo IPR availablePANTHERPTHR24106:SF250RNI-LIKE SUPERFAMILY PROTEINcoord: 72..164
NoneNo IPR availablePANTHERPTHR24106NACHT, LRR AND CARD DOMAINS-CONTAININGcoord: 72..164
NoneNo IPR availablePANTHERPTHR24106:SF250RNI-LIKE SUPERFAMILY PROTEINcoord: 190..327
coord: 9..120
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 8..324
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 176..335
e-value: 8.6E-33
score: 115.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 3..175
e-value: 9.0E-29
score: 102.0
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 69..90
e-value: 0.0019
score: 18.2
coord: 190..210
e-value: 0.049
score: 13.7
coord: 248..266
e-value: 0.34
score: 11.1
coord: 217..239
e-value: 0.0032
score: 17.4
coord: 95..118
e-value: 1.5E-5
score: 24.7
coord: 273..295
e-value: 1.0E-4
score: 22.1
coord: 40..58
e-value: 0.012
score: 15.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig877contigC-tenellus_contig877:2211..6297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig877.1.1mRNA_C-tenellus_contig877.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig877 2184..6297 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig877.1.1 ID=prot_C-tenellus_contig877.1.1|Name=mRNA_C-tenellus_contig877.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=356bp
MAQADGQRELEQIHLKGLRVNDEDAEALSNALISSGAVVRSISLASNDIG
DRGAAALARLLQDEPGYRCMLSSLDLRGNDIGGKGCELLSKRIRNNTTLT
TLDLSSNPLGPSGGLHLAEASWLMLKENFTLEALVVNNTEMTETGFIALI
SILREGNNTVRELSIGGQLLHSREEVAVRHMARMLETPPCMIRKLDLSKS
SIGDEGASLLRAALHRHPTLRVLNLSCNRIGITGGEVLAALLIEGSDLAE
LSLRANAIGDDGARAFKVVLQNSKTLRMLDLRNNGIGDSGLEALSEGIEW
SASLERLLVWGNLFGQSSLQKFASLESGRFALVGVSTDVKVFVVDGVYQA
AEKQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt