prot_C-tenellus_contig839.1.2 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig839.1.2
Unique Nameprot_C-tenellus_contig839.1.2
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length662
Homology
BLAST of mRNA_C-tenellus_contig839.1.2 vs. uniprot
Match: A0A6H5KGT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT9_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 1.690e-79
Identity = 211/578 (36.51%), Postives = 281/578 (48.62%), Query Frame = 0
Query:  132 FDILVLVLQASGLQSISTKSGHEFDVQNLLVADPSASFVKLTLWGQAARYGARLVRPGDLVRFNRVRTSKYQGTIQGNSTIETSFRIVWRDDAFMPPEDFTSTIMRTQAHCP-GSEQS--LKETDLSIDRSTACEIAAWAKREFPSVTS-------------------HTR------------------GQFLSVGVSVQAWGSLAGAQQGVETNVLVCVLCVSQAERLWVWKSAKGMHRKDLISRATALVTDGSSREMTLQLWDSLAGEDTLSLLRNGILPTPVSSGSGGTEKAVIKRRWAVFEISNVRPEYSFLGEALVLNTTLRSTVSRLPNDSLRGAPIIAAVACVPPV-----------IAKGTATSVITSASAFDRTEFGVGIAVKRAFPSVSDLLDNADFCGIAVLMGVVVYGVEAPKPLVWWGNETRSVASTAVRGATSNGGSGASFHLFHIRLGDRIESAKAFEVGK------GVGELRVSITS--GVAEDLLGGIPPELLLHPVFVNNKLGDIASSAAALVEGLLGGLVEGGVEGKERFDVILRCSAAVDDNGWVMTGGNRYEVVRWL 650
            +DI VLVLQASGL+ +++K G E D   LLVAD S SF +LTLWG+ AR G RLVR GDLVRFN +  S +QGT+Q  ST +TSFR+VWR DAF  P++  ST M      P  SE+S   +  DL++ R  AC +AAWAK EFPS+TS                   H                    G   + G +    GSL  A+ GV T V  CV+ VS+ ERLW+W+SA G  RKDL+SRATAL+TDG   EMTLQLW  +A ++T+  LR   +    +  S          R AVFE + ++P +SF  E LVLN     TV+++   S                           ++  TA S    + +F     G   + +R F SV+ L+    F G   L  VVV  V AP    W                 S GG      ++   L + + +A A   G       GV E  V +T+  G   +LLGG+P +LL       ++ G        +V+ LL GL  GG  G ER DV L CSA+ D+NG  + GG+ Y ++  L
Sbjct:  103 WDIFVLVLQASGLEQVTSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVRFNGIGVSSFQGTVQACSTRKTSFRVVWRGDAFTTPQEAPSTTMLPLGRPPPASERSPLSQGGDLAVSREAACALAAWAKTEFPSITSPEPPRGXXXXXXXQHLCNRHAAAPGVSPLMEEEGGVGADSGDAAAAGDAAFRPGSLGAARNGVGTTVRACVVEVSEVERLWMWESAGGKRRKDLVSRATALLTDGR-HEMTLQLWGDMASDETIDSLRGRAIAAGKNDVSAHDRTM---ERPAVFEFTRLQPSFSFSCETLVLNGK-SGTVTQMDRGSAEAVSXXXXXXXXXXXXXXXXXDERAPVSLATAKSSCAGSPSFLAQGAGAPASARR-FESVAALMSADGFSGAGYLDNVVVRKVCAP----WLSAAGSPDEHGRAASLPSLGGVAPPVVIYLGDLDEPVPAAAAAAAGTCDAWSAGV-EAVVGVTADGGALHELLGGVPLDLLAVGSGRGSRRGMAGDVGRGVVQCLLDGLEVGGRRG-ERVDVALACSASADENGRFIPGGSSYRLISLL 668          
BLAST of mRNA_C-tenellus_contig839.1.2 vs. uniprot
Match: D7FRL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL8_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 2.310e-79
Identity = 217/581 (37.35%), Postives = 281/581 (48.36%), Query Frame = 0
Query:  132 FDILVLVLQASGLQSISTKSGHEFDVQNLLVADPSASFVKLTLWGQAARYGARLVRPGDLVRFNRVRTSKYQGTIQGNSTIETSFRIVWRDDAFMPPEDFTSTIMRTQAHCP-GSEQSLKET--DLSIDRSTACEIAAWAKREFPSVTSH-------------------------TRGQFLSVGVSVQAW----------------GSLAGAQQGVETNVLVCVLCVSQAERLWVWKSAKGMHRKDLISRATALVTDGSSREMTLQLWDSLAGEDTLSLLRNGILPTPVSSGSGGTEKAVIKRRWAVFEISNVRPEYSFLGEALVLNTTLRSTVSRLPNDSLRGAPIIAAVACVPPVIAKGTAT------------SVITSASAFDRTEFGVGIAVKRAFPSVSDLLDNADFCGIAVLMGVVVYGVEAPKPLVWWGNETRSVASTAVRGATSNGGS-GASFHLFHIRLGDRIESAKAFEVGK----GV-GELRVSITSGVAEDLLGGIPPELLLHPVFVNNKLGDIASSAAALVEGLLGGLVEGGVEGKERFDVILRCSAAVDDNGWVMTGGNRYEVVRWL 650
            +D+ VLVLQASGLQ +++K G E D   LLVAD S SF +LTLWG+ AR G RLVR GDLVRFN V  S ++GT+Q  ST  TSFR+VWR DAF  P++  ST M  Q   P  SE+S      DLS+ R  AC +AAWAK EFPSVTS                            G   SV  +  A                 GSL   + GVET V  CV+ VS+ ERLW+WK A G  RKDL+SRATAL+TDG   EMTLQLW  +A ++T+  LR  ++ T   +G    + A+   R AVFE + ++P +SF  EALVLN     T + +   S                                   S    A +F     G   + +R F SV+ L+    F G   L  VV+  V AP     W     +       G T++  S G+      I  GD  E   A   G     GV   L V+   G   +LLGG+P +LL      +++ G        +V+ LL GL  GG  G ER DV L CSA+ D+NG ++ GG+ Y ++  L
Sbjct:  102 WDVFVLVLQASGLQQVTSKRGSEVDFGTLLVADQSLSFFRLTLWGRTARAGGRLVRAGDLVRFNGVGVSSFRGTVQACSTRSTSFRVVWRGDAFTTPQEAPSTTMLPQGRPPPASERSALSQGGDLSVSREAACALAAWAKTEFPSVTSPEPPRGXXXXXXXXXXXQDLWNRHATAAGVLPSVEEAEGAXXXXXXXXXXXDAAFRPGSLGAVRNGVETTVRACVVEVSEVERLWIWKYAGGKRRKDLVSRATALLTDGR-HEMTLQLWGDMASDETIDSLRGRVI-TAGKNGVSARDGAM--ERPAVFEFTRLQPSFSFSCEALVLNGK-SGTATHMDRGSAEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSCAGAPSFLAQGAGAPASARR-FESVAALMSADGFSGAGYLANVVIRKVCAP-----W---LSAAGPPGEHGRTASLPSLGSVAPPVVIYFGDPDEPVPAAAAGDARSAGVEAVLGVTADGGALHELLGGVPLDLLAVGSGSSSRGGMAGDVGRRVVQCLLDGLEVGGRRG-ERVDVALACSASADENGRLIPGGSSYRLISLL 667          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig839.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGT9_9PHAE1.690e-7936.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRL8_ECTSI2.310e-7937.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031657Replication protein A, OB domainPFAMPF16900REPA_OB_2coord: 129..205
e-value: 2.2E-7
score: 30.7
NoneNo IPR availableGENE3D2.40.50.140coord: 126..229
e-value: 5.6E-11
score: 44.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..105
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 127..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig839contigC-tenellus_contig839:8126..11011 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig839.1.2mRNA_C-tenellus_contig839.1.2Choristocarpus tenellus KU2346mRNAC-tenellus_contig839 7301..11082 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig839.1.2 ID=prot_C-tenellus_contig839.1.2|Name=mRNA_C-tenellus_contig839.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=662bp
MSTLHTVPGEGEEESESEMYTALTASQAERECGRLLRQPPSTLQCSLDRA
SLPRSNGGVGPLEETPLPVKKRQVRSRPLDALDPSSPRRQNLKRPRSLGD
TPASGPATVPCLPLTVTLRSLSLSFGAQHDLFDILVLVLQASGLQSISTK
SGHEFDVQNLLVADPSASFVKLTLWGQAARYGARLVRPGDLVRFNRVRTS
KYQGTIQGNSTIETSFRIVWRDDAFMPPEDFTSTIMRTQAHCPGSEQSLK
ETDLSIDRSTACEIAAWAKREFPSVTSHTRGQFLSVGVSVQAWGSLAGAQ
QGVETNVLVCVLCVSQAERLWVWKSAKGMHRKDLISRATALVTDGSSREM
TLQLWDSLAGEDTLSLLRNGILPTPVSSGSGGTEKAVIKRRWAVFEISNV
RPEYSFLGEALVLNTTLRSTVSRLPNDSLRGAPIIAAVACVPPVIAKGTA
TSVITSASAFDRTEFGVGIAVKRAFPSVSDLLDNADFCGIAVLMGVVVYG
VEAPKPLVWWGNETRSVASTAVRGATSNGGSGASFHLFHIRLGDRIESAK
AFEVGKGVGELRVSITSGVAEDLLGGIPPELLLHPVFVNNKLGDIASSAA
ALVEGLLGGLVEGGVEGKERFDVILRCSAAVDDNGWVMTGGNRYEVVRWL
GPSRRASKRGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031657REPA_OB_2
IPR012340NA-bd_OB-fold