prot_C-tenellus_contig8319.5.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8319.5.1
Unique Nameprot_C-tenellus_contig8319.5.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length147
Homology
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BLAST of mRNA_C-tenellus_contig8319.5.1 vs. uniprot
Match: D7G3W7_ECTSI (Vps54_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.830e-24
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 0 
Query:   29 DKDVARAAVTCQIAAVVHDNYTDLVGGMRKVQAVDLDLARAAVHVTNARRGLKRGLERGPCAILAMLASEERRARLGAAKDALELTLGFLVEEERVKEDLAVGKFTEAVSKA 140
            +KDVAR AVT QIA++V +NY  LVGGMR+VQAVDLDLARA V ++N RRGL+R L R    +L ++ +  RR RL   +      L  + EE RV+ DLA G+FT+AV+ A
Sbjct:   50 EKDVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATA 161
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8319.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3W7_ECTSI1.830e-2452.68Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019515Vacuolar protein sorting-associated protein 54, N-terminalPFAMPF10475Vps54_Ncoord: 22..138
e-value: 2.4E-6
score: 27.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8319contigC-tenellus_contig8319:4582..6147 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8319.5.1mRNA_C-tenellus_contig8319.5.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8319 4557..6342 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8319.5.1 ID=prot_C-tenellus_contig8319.5.1|Name=mRNA_C-tenellus_contig8319.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp
MFGFGRGDTDEGEGVDGSYDEYLERELRDKDVARAAVTCQIAAVVHDNYT
DLVGGMRKVQAVDLDLARAAVHVTNARRGLKRGLERGPCAILAMLASEER
RARLGAAKDALELTLGFLVEEERVKEDLAVGKFTEAVSKAGEKRDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019515VPS54_N