prot_C-tenellus_contig831.4.3 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig831.4.3
Unique Nameprot_C-tenellus_contig831.4.3
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length145
Homology
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BLAST of mRNA_C-tenellus_contig831.4.3 vs. uniprot
Match: D7G0N6_ECTSI (Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.360e-24
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:    2 DLTIHPGKIHLVHEILYGGVTGSVRVFGSLKRYDAATDEAFIEYKGETLTVGTSLIPGFQFRQNSLFEFIGEIE 75
            DLTI PGKIHLV EIL  GVTGSVRV GSLK YDAA D A ++YKG+ LT+   L+  FQFR +SL+EFIGE++
Sbjct:    5 DLTIQPGKIHLVREILRDGVTGSVRVLGSLKSYDAAADVAVVDYKGDQLTIDACLLTDFQFRIDSLYEFIGEVQ 78
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BLAST of mRNA_C-tenellus_contig831.4.3 vs. uniprot
Match: A0A1S8W7W3_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W7W3_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 5.460e-5
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:   25 VRVFGSLKRYDAATDEAFIEYKGETLTVGTSLIPGFQFRQNSLFEFIGEIEV 76
            VR+ G L+ Y+  T+ A +EY+G+ L V T+L+  F ++ NSL+++IGE+ V
Sbjct:    6 VRILGRLRSYNVHTNMAQVEYRGQQLLVDTALLGIFDYKINSLYQWIGELVV 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig831.4.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0N6_ECTSI5.360e-2466.22Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus si... [more]
A0A1S8W7W3_9FUNG5.460e-542.31Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 4..96
e-value: 9.7E-14
score: 53.2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 110..144
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..109
IPR029146CST complex subunit Ten1, animal and plant typePFAMPF15490Ten1_2coord: 5..77
e-value: 3.3E-12
score: 46.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig831contigC-tenellus_contig831:13229..13891 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig831.4.3mRNA_C-tenellus_contig831.4.3Choristocarpus tenellus KU2346mRNAC-tenellus_contig831 12499..14091 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig831.4.3 ID=prot_C-tenellus_contig831.4.3|Name=mRNA_C-tenellus_contig831.4.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=145bp
MDLTIHPGKIHLVHEILYGGVTGSVRVFGSLKRYDAATDEAFIEYKGETL
TVGTSLIPGFQFRQNSLFEFIGEIEVGQSHLSLEKDDIPSLNIASFFLPV
FVWSLGRILRPSSHAKLSPWTPEEAVNSYGITSFNSGWCHRKAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029146Ten1_animal_plant