prot_C-tenellus_contig8306.5.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8306.5.1
Unique Nameprot_C-tenellus_contig8306.5.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length159
Homology
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: D8LKQ4_ECTSI (Poly(Rc) binding protien (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ4_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 1.630e-80
Identity = 128/158 (81.01%), Postives = 139/158 (87.97%), Query Frame = 0
Query:    3 GPETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDEADDRMVTAAGMFNSVQVAFSHILSHAGYLGPGAEPLADLTG-DPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISSHAFQFHHLHGPLPPPPGPPLSPQ 159
            G ETVSRVLIPN KIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLH ++DDRMVTAAG FNSVQ+AF+HILSHAG +GP A+P+  L G DP+CV NSFRLLIPN+KAGGLIGRGG TIKAIRE SGARIEISSHAF FH +HGPLP PP  P +PQ
Sbjct:   98 GMETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHGDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHHPPTPQ 255          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.600e-40
Identity = 79/105 (75.24%), Postives = 88/105 (83.81%), Query Frame = 0
Query:   56 MVTAAGMFNSVQVAFSHILSHAGYLGPGAEPLADLTG-DPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISSHAFQFHHLHGPLPPPPGPPLSPQ 159
            MVTAAG FNSVQ+AF+HILSHAG +GP A+P+  L G DP+CV NSFRLLIPN+KAGGLIGRGG TIKAIRE SGARIEISSHAF FH +HGPLP PP    +PQ
Sbjct:    1 MVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHHTPTPQ 105          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A836CIH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.290e-33
Identity = 90/172 (52.33%), Postives = 103/172 (59.88%), Query Frame = 0
Query:    5 ETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDS------CTGLHDEADDRMVTAAGMFNSVQVAFSHILSHAGYLGPGAEPLADL---------TGDPECV--------PNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISSHAFQFHHLHGPLPPPPG 153
            E VSRVLIPN KIGAVIGKGGAI+KHIRE SGA+VTISD+        G      +R+V   G F +V  A   IL+HA     G EPL  L         +G+            P++FR+LIPN KAG LIGRGG TIKAIR+ SGARIEISSH      L G LP PPG
Sbjct:  105 EAVSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLVHLVGSFGAVVAALGAILAHAETPSNG-EPLPGLAQLVAGGLLSGEAAAAVDAAITVPPSAFRMLIPNAKAGALIGRGGTTIKAIRDASGARIEISSH------LAGNLPAPPG 269          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A835Z8V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.070e-29
Identity = 84/173 (48.55%), Postives = 98/173 (56.65%), Query Frame = 0
Query:    5 ETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDS------CTGLHDEADDRMVTAAGMFNSVQVAFSHILSHA------------------GYLGPGAEPLADLTGDPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISSHAFQFHHLHGPLPPPPG 153
            E +SRVLIPN KIGAVIGKGGAI+KHIRE SGA+VTISD+        G      +R++   G F +V  AF  IL+HA                  G L   A   A L       P+ FR+LI + KAG LIGR G TIKAIR+ SGARI+ISSH      L G LP PPG
Sbjct:  293 EAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHAETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSH------LAGGLPVPPG 459          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A8J2T296_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T296_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.880e-17
Identity = 54/143 (37.76%), Postives = 81/143 (56.64%), Query Frame = 0
Query:    1 MSGPETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDS-----CTGLHDEADDRMVTAAGMFNSVQVAFSHILSHAGYLGPGAEPLADLTGDPECVPNSFR--LLIPNIKAGGLIGRGGMTIKAIREHSGARIEISS 136
            ++G     ++L+P+   G VIGKGGA++ HIR+ SG +V + +S       G      +R++T +G F SV  AF  +L H     P A+PL  LT  P   P S    +L+P  K GGLIGRGG +I  +R+ SGA +++ +
Sbjct:   94 LAGRTVEFKLLLPHAACGIVIGKGGAMVSHIRDASGCQVDVQESPAPPPMAGGVQGGSERIITLSGDFGSVYAAFQMVLQHLAAAQP-ADPL--LTTRP---PGSVEAVVLVPRNKTGGLIGRGGASINRVRQDSGATVKVGA 230          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A7S3JWP9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWP9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.270e-15
Identity = 47/139 (33.81%), Postives = 77/139 (55.40%), Query Frame = 0
Query:    1 MSGPETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDEA---DDRMVTAAGMFNSVQVAFSHILSHAGYLGPGAEPLADLTGDPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISS 136
            ++G    +++LIPN K+G VIGKGGA+I HIRE S A + I++     ++++    +R++T  G F +V  AF  +  H        +P       P  +  +  +L+P  K GGLIGR G +I  +R  SGA +++ +
Sbjct:  151 LAGRTIEAKLLIPNTKVGIVIGKGGAMINHIRESSKASLDIAEPGQQNNNQSALPQERVLTFNGDFAAVYTAFQMVQQHLSVASQQQDPNNSTVVPPSLIETT--ILVPRNKTGGLIGRSGASINRVRNDSGATVKVGA 287          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A1X2H9B6_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9B6_SYNRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.420e-14
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 0
Query:    2 SGPETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDEADDRMVTAAGMFNSVQVAFS----HILSHAGYLGPGAEPLADLTGDPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISSHAF 139
            SGP    R L+     G +IG+GG  +  IRE S A+VTISD   G    A +R++T +G  N+V  A+S     ILS       GA+  A LT          RLLI + + G LIGRGG  IKAI+EHS AR+  S    
Sbjct:  133 SGPSISLRSLVSTKDAGVIIGRGGKNVSEIREYSAARVTISDIVQG----AIERILTVSGPVNAVSKAYSLVAEKILSEMQASEEGAQEQA-LT---------IRLLIADQRMGTLIGRGGSVIKAIQEHSNARVSASEEVL 260          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A7S4F4T8_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F4T8_CHRCT)

HSP 1 Score: 77.0 bits (188), Expect = 6.280e-14
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 0
Query:    7 VSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDEADDRMVTAAGMFNSVQVAFSHIL----------SHAGYLGPGAEPLADLTGDPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISS 136
            V R++IPN ++G +IGKGGA IK IRE+SG K+ I+D   G    + +R+V+  G    V  A   +L          S  G      E  ++ TG      ++ +L++ N + GG+IG+GG  IK +RE SGA I++ +
Sbjct:   38 VLRLMIPNTQVGTIIGKGGANIKGIRELSGCKMQIADMVIG----STERLVSITGSVTGVTKAVELMLGVIEEPGSKTSDGGSSALNPEMASEGTGQS----HTLKLVLNNNQVGGIIGKGGSMIKQMREESGAFIKVEA 169          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A197JCP8_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JCP8_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.800e-13
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 0
Query:    4 PETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDEADDRMVTAAGMFNSVQVAFSHILSHAGYLGPGAEPLADLTG---DPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARI 132
            P T  R L+   + G +IGK G  +K IRE+SGA+V IS+   G    A +R++T  G  ++V  AFS I             +A+  G   +PE    + R+L  N K G +IG+GG  IK ++E SGARI
Sbjct:   11 PVTTIRALVSTKEAGVIIGKSGKNVKDIRELSGARVNISEMIPG----AVERVLTVVGPLDAVAKAFSLIAKTT---------IAEQAGGDVEPESESTTMRILAGNHKMGSVIGKGGSKIKEVQEASGARI 129          
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Match: A0A0D6QYY3_ARACU (Uncharacterized protein n=3 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QYY3_ARACU)

HSP 1 Score: 77.0 bits (188), Expect = 1.840e-13
Identity = 52/139 (37.41%), Postives = 72/139 (51.80%), Query Frame = 0
Query:    2 SGPETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDEADDRMVTAAGM------FNSVQVAFSHILSHAGYLGPGAEPLADLTGDPECVPNSFRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEI 134
            SG E V RVL PN KIG VIGKGG+IIK +R+  G K+ ++D   G    +DDR++  +         +  Q A  HI +    LGP  + +            + RLL+P  + G LIG+GG  I  +R  +GA I I
Sbjct:  305 SGEEIVFRVLCPNKKIGGVIGKGGSIIKSLRDEIGVKIKVTDVVPG----SDDRIIIISSHEVPEEDLSPAQEALLHIQTQIVDLGPDKDGVI-----------TTRLLVPANQVGCLIGKGGSIISEMRRATGANIRI 428          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8306.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKQ4_ECTSI1.630e-8081.01Poly(Rc) binding protien (Partial) (Fragment) n=1 ... [more]
A0A6H5L8U0_9PHAE1.600e-4075.24KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CIH4_9STRA1.290e-3352.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8V5_9STRA1.070e-2948.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2T296_9STRA1.880e-1737.76Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3JWP9_9STRA1.270e-1533.81Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1X2H9B6_SYNRA1.420e-1440.85Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
A0A7S4F4T8_CHRCT6.280e-1435.71Hypothetical protein (Fragment) n=2 Tax=Chrysotila... [more]
A0A197JCP8_9FUNG1.800e-1337.88Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A0D6QYY3_ARACU1.840e-1337.41Uncharacterized protein n=3 Tax=Araucariaceae TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 4..78
e-value: 5.0E-11
score: 52.6
coord: 97..147
e-value: 6.7
score: 8.5
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10K Homology domain, type 1coord: 98..155
e-value: 2.1E-11
score: 45.4
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10K Homology domain, type 1coord: 3..77
e-value: 3.8E-16
score: 60.6
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 98..137
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 4..76
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 101..135
e-value: 3.6E-8
score: 33.1
coord: 8..74
e-value: 2.6E-13
score: 49.6
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 5..141
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 98..134
score: 12.517
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 5..73
score: 15.661
NoneNo IPR availableCDDcd02396PCBP_like_KHcoord: 9..74
e-value: 6.57614E-17
score: 68.6571

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8306contigC-tenellus_contig8306:5067..6226 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8306.5.1mRNA_C-tenellus_contig8306.5.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8306 5067..6226 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8306.5.1 ID=prot_C-tenellus_contig8306.5.1|Name=mRNA_C-tenellus_contig8306.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=159bp
MSGPETVSRVLIPNLKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHD
EADDRMVTAAGMFNSVQVAFSHILSHAGYLGPGAEPLADLTGDPECVPNS
FRLLIPNIKAGGLIGRGGMTIKAIREHSGARIEISSHAFQFHHLHGPLPP
PPGPPLSPQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1