prot_C-tenellus_contig8276.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8276.1.1
Unique Nameprot_C-tenellus_contig8276.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length904
Homology
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: D8LSB0_ECTSI (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB0_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.100e-57
Identity = 158/382 (41.36%), Postives = 206/382 (53.93%), Query Frame = 0
Query:  497 SKAEKSWLALRKTLHERYRQFKDALKASELDSALKDALKGSR---------------GGVLRPGFRIFHRQEHAFTHIDALASSLGVSEGNDLKVFSYETNSTGSRKFMVCDLELFQQNYLKHLSGSLFQDKTLINPS--PEPLEETIQSSTASPGPP----SSSPPTPLSPL-----------PSNTSITSQTFSQLRNQSPYKIPSSQG----QGNQPGMFPGPEREQDKAGGIGVGTLGG-------PVVTC----------LQHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDLEA-TCPGPMSSPAT 824
            SK E SWLALR+ LHERYR   D+++    +    +A                    G V+ PG R+F RQ+HAFT++DALA+ L   +    +V S+ET++TGSRKF+VCD+  F++ Y      +   D +L+     P+P       S +SP P     S+ P  P SP             SN      T   +R+ +    PS       +  QP  FP P  +     G GV ++G        P   C          L+H+YEIIR+G PCRMYFDLEFAR  NPGLDGE LV  WIN+VAGKL+Q++ + V  S+ LDLDSSTPKKFSRHLI HLP  Q  L+N SHVGRFVN LA++LE+   P   S+PAT
Sbjct:  442 SKGESSWLALRQALHERYR---DSVEHGAAEQTAAEAXXXXXXXXXXXXXXXXXXXXGEVMSPGIRVFRRQDHAFTYVDALAARLAAEDAARYRVLSFETSATGSRKFVVCDIRRFEERY----PYTALPDPSLLRHLHLPDPTHHRQPGSPSSPLPXXXXQSTPPHVPSSPAIAEDSSNRGECDSNPGDGRNTGDSVRSPATTTTPSPMSLEPLEPPQPAAFPAPRPD-----GSGVSSVGPVCEKPSHPPCPCPSSPPPRPSPLRHMYEIIREGRPCRMYFDLEFARGPNPGLDGEELVCAWINVVAGKLHQEFGVSVGTSNVLDLDSSTPKKFSRHLIFHLPGDQLFLDN-SHVGRFVNSLAAELESWRAPQSPSTPAT 810          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: A0A6H5L604_9PHAE (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L604_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.890e-49
Identity = 145/394 (36.80%), Postives = 197/394 (50.00%), Query Frame = 0
Query:  497 SKAEKSWLALRKTLHERYRQFKDALKASELDSALKDALKGSRGG------------VLRPGFRIFHRQEHAFTHIDALASSLGVSEGNDLKVFSYETNSTGSRKFMVCDLELFQQNY----------LKHLS-----------GSLFQDKTLINPSPEPLEETIQSSTASPGPPSSSPPTPLSPLPSNTSITSQTFSQLRNQSPYKIPSSQGQGNQPGMFPGPEREQDKAGGIGVGTL-------GGPVVTC----------LQHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVND--LASDLEATCPGPMSSPATEGHSLSGSLPAPTN 838
            SK E SWLALR+ LHERYR  ++   A +  +   +  +G R G            V+ PG R+F RQ+HAFT++DALA+ L   +    +V S+ET++TGSRKF+VCD+  F++ Y          L+HL                       P   P    I   +++ G   S P    +   +  S  + T +   +  P ++P       QP +FP P  +     G GV +L         P   C          L+H+YEIIR+G PCRMYFDLEFAR  NPGLDGE LVR WIN+VAGKL++++ + V  S+ LDLDSSTPKKFSRHLI HLP G   +     +    ND  +   ++ T   P +S    G   SGS    TN
Sbjct:  614 SKGESSWLALRRALHERYRDSEEHGAAEQAAAEAAEHGRGGRAGSSKVGRGGCGGEVMSPGIRVFRRQDHAFTYVDALAARLAAEDAARYRVLSFETSATGSRKFVVCDIRRFEERYPYTALPDPSLLRHLRLPDPTHXXXXXXXXXXXXXXXXPPHVPSGPAIAEDSSNRGECDSHPGDGRNTGDNVRSPATTTTASPVSLEPLELP-------QPAVFPTPSPD-----GSGVSSLDPVCEKSSHPPCPCPXXXXPRPSPLRHMYEIIREGCPCRMYFDLEFARGPNPGLDGEELVRAWINVVAGKLHREFGVSVGASNVLDLDSSTPKKFSRHLIFHLP-GDQDVRAKESIKSRKNDESIRCGIDGTMEHPNNSVEGPGRG-SGSAKKATN 993          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: A0A0P1B5D5_PLAHL (DNA-directed primase/polymerase protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5D5_PLAHL)

HSP 1 Score: 115 bits (288), Expect = 1.120e-22
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 0
Query:  710 QHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDLEATCPGPMSSPATEGHSLSGSLPAPTNVYIDSGND 846
            +HVYEIIRDGVPCR+YFDLEF R  N  +DG+ALV   ++++  +L++ Y + V   D  +LDSSTP KFSRHLI+HLP G   +NN  H G FV +   DL A           + H  S  L +P  V  +S  D
Sbjct:  396 RHVYEIIRDGVPCRLYFDLEFKRRINVHVDGDALVARLVSLLQLQLFRCYRLYVARQDIYELDSSTPDKFSRHLIIHLPDGSLFMNN-LHAGSFVREFIRDLAAV--------HVKKHETSDGLLSPFLVNTESAGD 523          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: W2ME65_PHYPR (DNA-directed primase/polymerase protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2ME65_PHYPR)

HSP 1 Score: 113 bits (282), Expect = 5.120e-22
Identity = 62/138 (44.93%), Postives = 81/138 (58.70%), Query Frame = 0
Query:  710 QHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDLEATCPGPMSSPATEGHSLSGSLPAPTNVYIDSGNDP 847
            +HVYEIIR+GVPCR+YFDLEF R  N  +DG+ALV   ++++  +L++ Y + V   D   LDSSTP KFSRHLI H P G     +N H G FV +  +DL            T+  S    L +P  V  +SGNDP
Sbjct:  329 RHVYEIIREGVPCRLYFDLEFKREINLHVDGDALVARLVSLLQLQLFRRYGLRVHHRDIYQLDSSTPAKFSRHLIFHFPDGNL-FRDNLHAGAFVREFINDLVDL---------TDYTSAPDDLLSPFLVNTESGNDP 456          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: A0A6A3TPP9_9STRA (DNA-directed primase/polymerase protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TPP9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.170e-22
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 0
Query:  710 QHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDLEA 813
            +HVYEIIR+G PCR+YFDLEF RA NP +DG+ LV   ++++  +LY+ Y +         LDSSTP KFSRH+I HLP G   ++N  H G FV +  SDL A
Sbjct:  326 RHVYEIIREGTPCRLYFDLEFKRAINPHVDGDTLVDRLVSLLQLQLYRRYGVHARHGSIYQLDSSTPAKFSRHIIFHLPDGDLFVDN-LHAGAFVREFISDLVA 428          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: A0A835YVT3_9STRA (DNA-directed primase/polymerase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.210e-21
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 0
Query:  711 HVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDL 807
            H YE+IR+G+PCR+YFD+EF+R  NP LDG+ALVR W++ V  KL  D+   VE    + LDS+T +KFSRH+ILHL  G+    +N H G  VN L
Sbjct:  202 HWYEVIREGMPCRLYFDMEFSREANPTLDGDALVRRWLDAVQAKLLHDHGATVESDGIVQLDSTTERKFSRHVILHLEGGRL-FASNVHAGHLVNQL 297          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: A0A329STK8_9STRA (DNA-directed primase/polymerase protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329STK8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.620e-21
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 0
Query:  710 QHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDL 811
            +HVYEIIR+GVPCR+YFDLEF RA N  ++G+ALV   ++++  +L++ Y I V   D   LDSSTP KFSRHLI H P G     +N H G FV +  SDL
Sbjct:  330 RHVYEIIREGVPCRLYFDLEFKRAINLRVNGDALVARLVSLLQLQLFRRYGIHVHHRDIYQLDSSTPAKFSRHLIFHFP-GASLFTDNLHAGAFVREFISDL 430          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: G4YLM9_PHYSP (DNA-directed primase/polymerase protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YLM9_PHYSP)

HSP 1 Score: 110 bits (275), Expect = 3.640e-21
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 0
Query:  710 QHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDLEA 813
            +HVYEIIR+G PCR+YFDLE  RA NP +DG++LV   ++++  +LY+ Y I         LDSSTP KFSRHLI HLP G   ++N  H G FV +  SDL A
Sbjct:  331 RHVYEIIREGTPCRLYFDLELKRAINPHVDGDSLVTRLVSLLQLQLYRRYGIHTHLGSIYQLDSSTPAKFSRHLIFHLPDGALFVDN-LHAGAFVREFISDLVA 433          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: UPI001C089BB4 (DNA-directed primase/polymerase protein isoform X1 n=4 Tax=Alosa TaxID=34772 RepID=UPI001C089BB4)

HSP 1 Score: 108 bits (270), Expect = 8.610e-21
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 0
Query:  709 LQHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDLE 812
            L H YE+I +G  C++YFDLEF RA NPGL+GE +V   I  V  KL++ Y ++   SD L+LDSST  KFSRHLI  LP   +   +NSHVGRF++ + + ++
Sbjct:  100 LMHCYEVIPEGAVCKLYFDLEFQRAWNPGLNGETMVACLIQYVCKKLHEAYGLKCSSSDVLNLDSSTEDKFSRHLIFQLPNATF--RDNSHVGRFIHAILTPVK 201          
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Match: I0YV81_COCSC (DNA-directed primase/polymerase protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YV81_COCSC)

HSP 1 Score: 105 bits (263), Expect = 1.280e-20
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 0
Query:  710 QHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINIVAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHVGRFVNDLASDLEATCP 816
            +H YEIIR G PC +YFDLE+ +  N G+DG++LV   + + A +L + + +E+EDS  L++DSS+P KFSRH+I+ +P   +   NN HVG FV D+ +  E T P
Sbjct:  107 RHCYEIIRQGYPCHLYFDLEYQKDFNAGVDGDSLVGIVLKLCAEQLQEKFQLEMEDSWVLEMDSSSPHKFSRHVIVKIPGAAFQ--NNFHVGAFVKDMCAAQEGTDP 211          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8276.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB0_ECTSI1.100e-5741.36DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
A0A6H5L604_9PHAE1.890e-4936.80DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
A0A0P1B5D5_PLAHL1.120e-2245.99DNA-directed primase/polymerase protein n=1 Tax=Pl... [more]
W2ME65_PHYPR5.120e-2244.93DNA-directed primase/polymerase protein n=9 Tax=Ph... [more]
A0A6A3TPP9_9STRA9.170e-2250.96DNA-directed primase/polymerase protein n=4 Tax=Ph... [more]
A0A835YVT3_9STRA1.210e-2152.58DNA-directed primase/polymerase protein n=1 Tax=Tr... [more]
A0A329STK8_9STRA3.620e-2152.94DNA-directed primase/polymerase protein n=2 Tax=Ph... [more]
G4YLM9_PHYSP3.640e-2151.92DNA-directed primase/polymerase protein n=1 Tax=Ph... [more]
UPI001C089BB48.610e-2149.04DNA-directed primase/polymerase protein isoform X1... [more]
I0YV81_COCSC1.280e-2045.79DNA-directed primase/polymerase protein n=1 Tax=Co... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 821..873
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 815..904
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..257
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 616..696
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 649..680
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..416
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 315..331
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 616..634
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..331
NoneNo IPR availablePANTHERPTHR31399DNA-DIRECTED PRIMASE / POLYMERASE PROTEINcoord: 531..815

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8276contigC-tenellus_contig8276:1328..6240 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8276.1.1mRNA_C-tenellus_contig8276.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8276 1255..6240 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8276.1.1 ID=prot_C-tenellus_contig8276.1.1|Name=mRNA_C-tenellus_contig8276.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=904bp
MAALGGESIAEIDLENAFLREVDLLEAAAAHGKSMSRLNVQPGQPVTAAI
KARSQFSITGNNCLLMTTRGAGDLQKCEVNINSEASTRKAYRWRVMGIGV
KDWYTADKEDIGEGILTVSCQGEPSNLQLLELVVTVSNSGHMMEIPWEAL
FCWKVALAGPKAHNSRPSLIPAAINQRASVAWADAPEHTSVSRPFESRTT
LLLHLSIGCTMSLQGLHSLDGFECQATAQTKDKRLSHSPPPATTEENTSG
IHPEGSNQQTDSLDCQFLCQGIRGDALLAQLVSAFSPEERGLSPTTATTH
LKENDLKENEQSDRPGLSSHPVWESAFQQGQTEGTEVLPEVCVVKHDQSS
PLIACDKVETEHDSAASHEFRPCLGKIKARGKGGRHRKGNAALAGLQTPR
DDSDGDIPDEEWRRPMTNRSNQTGKRRRLHRGRACPPPGPGAVGTGNCSR
KRSTLQGNEKVLGDEQAFKHGNYDSPDKTVLREEVGRPRRMTKVAMSKAE
KSWLALRKTLHERYRQFKDALKASELDSALKDALKGSRGGVLRPGFRIFH
RQEHAFTHIDALASSLGVSEGNDLKVFSYETNSTGSRKFMVCDLELFQQN
YLKHLSGSLFQDKTLINPSPEPLEETIQSSTASPGPPSSSPPTPLSPLPS
NTSITSQTFSQLRNQSPYKIPSSQGQGNQPGMFPGPEREQDKAGGIGVGT
LGGPVVTCLQHVYEIIRDGVPCRMYFDLEFARAHNPGLDGEALVRTWINI
VAGKLYQDYSIEVEDSDFLDLDSSTPKKFSRHLILHLPRGQYSLNNNSHV
GRFVNDLASDLEATCPGPMSSPATEGHSLSGSLPAPTNVYIDSGNDPSLE
THPVSSLSPMERPNRQHLTETLTPAMSVLDEGERGQKKAACSQGSMAAGS
KGRG
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