prot_C-tenellus_contig8213.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig8213.1.1
Unique Nameprot_C-tenellus_contig8213.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length262
Homology
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BLAST of mRNA_C-tenellus_contig8213.1.1 vs. uniprot
Match: D8LUB6_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.440e-8
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0 
Query:  130 GKMRVNR-NSRTSSTTMSQMMETKFSSLPLCPETLKAINEVLCYETMTKVQHHAIPRALSGN 190
            G  +VN  NSRTS+TTMSQM E+KF+ LPL   T +AI EVL Y T+TKVQ+ +IP AL+G+
Sbjct:  122 GGAKVNNPNSRTSTTTMSQMTESKFAQLPLSAPTQRAIAEVLGYATLTKVQNDSIPPALAGH 183
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8213.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUB6_ECTSI2.440e-859.68DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 122..205
e-value: 8.8E-6
score: 27.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 204..221
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 227..245
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 246..262
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 222..226
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..203
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 151..180
score: 9.665

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8213contigC-tenellus_contig8213:2399..3184 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8213.1.1mRNA_C-tenellus_contig8213.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig8213 2398..3184 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig8213.1.1 ID=prot_C-tenellus_contig8213.1.1|Name=mRNA_C-tenellus_contig8213.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=262bp
HSDRLRRRGSHLQCQDKGIVAVGLVEEVSLQGPFSCMSTILDDLTHLTYC
CNWRDLVQSRVAFGRSVAGGGKKRRRNRQSGRGRGVSPGGGGNGGSIQFN
PDHHPTPPAHTTHAGVHDPPAPPKSMAPQGKMRVNRNSRTSSTTMSQMME
TKFSSLPLCPETLKAINEVLCYETMTKVQHHAIPRALSGNYTCFSRILLS
WDMASKFLLVVSVVLIVRISYAPLHHYLGGTIYMPVDCITCWILFTAHNQ
GLPDTPPADSPT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif