prot_C-tenellus_contig7147.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7147.2.1
Unique Nameprot_C-tenellus_contig7147.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length208
Homology
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BLAST of mRNA_C-tenellus_contig7147.2.1 vs. uniprot
Match: D8LNV8_ECTSI (TFIIS N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.250e-5
Identity = 39/98 (39.80%), Postives = 47/98 (47.96%), Query Frame = 0 
Query:   54 AGKGKAVGSQFLLERAKRKRSGQAGS----------ESATPGLGGRGGMDRTMTPAEICVLKTIGTGSSGG--------VGGILGLDRLMRVMVNALD 133
            AG G +  S F   R KR+  G+ G           E    G GG  G    +TPAE  +LKT+G   +GG        V G  GLDRLMRVM+NA D
Sbjct:   25 AGGGSSASSDFFRARYKRQNVGKGGGALAPGWAVALEGPQGGSGGGAGAREVLTPAENSLLKTLGDAVAGGGGAXXRGGVAGAAGLDRLMRVMINAPD 122
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7147.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNV8_ECTSI1.250e-539.80TFIIS N-terminal domain-containing protein (Fragme... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7147contigC-tenellus_contig7147:2522..3356 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7147.2.1mRNA_C-tenellus_contig7147.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7147 1956..3495 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7147.2.1 ID=prot_C-tenellus_contig7147.2.1|Name=mRNA_C-tenellus_contig7147.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=208bp
MSSLLAMPLPDPGTALKVSPQVSKNNGPGWTSNSARTGANPSVQRMNQSS
AGSAGKGKAVGSQFLLERAKRKRSGQAGSESATPGLGGRGGMDRTMTPAE
ICVLKTIGTGSSGGVGGILGLDRLMRVMVNALDVSVTPPNGASATMPPSF
LRGYFTIKASYLCKPPHMSCYSSPRVLCFKREEGMRLWRYFIPAQPMTNT
QHKTQGT*
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